Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0010576

Physical Location & Seq

Genomic Coordinates Reverse (-)

48046398 .. 48048134

Gene Structure 1737 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00427450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGGTTGCTTTCCAGCTTGTTTCACTTCTTCTAATAGCCGAAAGCACCGAAAATCAGTAGCTGTAACTCCCTCTATACAAAACCTAGAACAAATCGTTGAAGCTACCGAAGAAGAAGCTGTTCGATTTGAACCCACAAAGCTAGATGACATTATCAAAGAGGTTATAGAAGAACAAACCAAGAATGATGTTAAAAGGAAAGTGACATTTGATTTGGAGGAAGAAGGCATTGATGAGAAACAGAATGAAAATAAAGAGGAAACACCAAAAGAGATTGAACCAATTTTGGGTTCTATTGGATCAAGTGTGGTTACTGTGGTACCATCTCCTCCATTGAATCATAGATACGAGAATTGCTCAAACAATGAGGATGAAGATGCAGGTGTAATAGATTTATCAGAAAGTGATTTGAATGGAGATGATTATGGTGAGAGTGTTGATGATGAGGTTGAGAGCAATAAGCAAAGTGTGATTCAAGAACAAGAGTCTTCAGAATCTTTGTTTTCGATATCAATTGATTCGAGGAAGCGAGTTAGTGATGCTGAAGAAGATGAGAAGGAGGTGAATAGCCCAATGCCAAAACCAAAGCCAATTGAATCAGACCAAAGTGGTAGAGATAATAGTAATAGGAGTCAGCATTGCCATTCAGTGTTGAGCCCTATAGAGAATCTTAGTCAATGGAAGGAGGTGAAAGCGAAAGCAATTCCTTTAGCGTCGAATCACCAAGAGAAGGAGAATATGAATGCTGAGCAAGATTTCAACATACCAATTAGTCCAGAGCCTACACTGAAGCTGTCAAAACACTTCAGAAGAAGACCACTTGAGTCCAATGACCAAAAGCTTGTTGACCAAGAAAATGGGGTTGACACTAGCCTTTCGAGCTGGTTGGTTGAATGTGAAACCACACCCAAGTCGAATGCTAGTGAAAATTCTGTCGGGAACTTGATGTGTGAGGGAGTGAGTTCATCAAGAAGTCTTGGAGATGGACCAATTTTAGGAGCATGGACTAGTGAAGAGCTTAAGCAGTTGTCTAATTCATCTACTCTAAACCAGTCGCGAAGCCCGAGTCCTGATCAAATACCGATCATAGGGACTGTAGGGAGCTACTGGAGTCACACTGGTCAGGCCACGGATTCAGACTCAAACTCTTCCAGCAGAGGAATGGAAAACAAAGCAGGGAGGAACAGAGGGGATGAGAAAGTGAAATGGAAGACTATACCATTCGAGGCAAAATTGGAGAGAGTTTTAGATATGGGCATACTTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

423

Amino Acids

46.86

Weight (kDa)

4.65

Isoelectric Point (pI)

63.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01750
malus_domestica	MD04G1231100.v1.1 MD12G1249400.v1.1
prunus_persica	Prupe.6G350800_v2.0.a1 Prupe.6G350800_v2.0.a1
pyrus_communis	pycom04g20470 pycom12g22920
rosa_chinensis	RchiOBHm_Chr3g0449491
rosa_laevigata	RLG00000025822 RLG00000025825
rosa_multiflora	Rmu_sc0000430.1_g000018 Rmu_sc0019012.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427450
rosa_rugosa	Rorug02G0621600 Rorug02G0621700
rosa_samantha	Rh3AG019800 Rh3BG019800 Rh3CG018500 Rh3DG019800
rosa_wichuraiana	Rw3G001540 Rw3G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	371
Acc36I	ACCTGC	1 cut(s)	371
Acc65I	GGTACC	1 cut(s)	319
AccB1I	GGYRCC	1 cut(s)	319
AccII	CGCG	1 cut(s)	1057
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	1 cut(s)	928
AcuI	CTGAAG	4 cut(s)	474, 564, 790, 809
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	4 cut(s)	287, 730, 995, 1088
AflII	CTTAAG	1 cut(s)	1019
AgsI	TTSAA	9 cut(s)	101, 131, 278, 337, 412, 476, 596, 760, 893
AhlI	ACTAGT	1 cut(s)	1007
AjuI	GAANNNNNNNTTGG	2 cut(s)	274, 306
AlwI	GGATC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	1063
AoxI	GGCC	1 cut(s)	1125
ApoI	RAATTY	1 cut(s)	928
ArsI	GACNNNNNNTTYG	4 cut(s)	196, 228, 1051, 1083
Asp700I	GAANNNNTTC	1 cut(s)	120
Asp718I	GGTACC	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	986
AsuHPI	GGTGA	4 cut(s)	440, 574, 700, 713
AvaI	CYCGRG	1 cut(s)	1063
AvaII	GGWCC	1 cut(s)	986
BaeI	ACNNNNGTAYC	2 cut(s)	303, 336
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	1 cut(s)	659
BbsI	GAAGAC	3 cut(s)	480, 820, 1217
BccI	CCATC	2 cut(s)	331, 977
BclI	TGATCA	1 cut(s)	1072
BcuI	ACTAGT	1 cut(s)	1007
BfaI	CTAG	5 cut(s)	86, 143, 870, 921, 1008
BfmI	CTRYAG	2 cut(s)	660, 1095
BfrI	CTTAAG	1 cut(s)	1019
BfuAI	ACCTGC	1 cut(s)	371
BlpI	GCTNAGC	1 cut(s)	747
Bme18I	GGWCC	1 cut(s)	986
BmeT110I	CYCGRG	1 cut(s)	1063
BmgT120I	GGNCC	1 cut(s)	986
BmiI	GGNNCC	1 cut(s)	321
BmsI	GCATC	2 cut(s)	367, 529
BpiI	GAAGAC	3 cut(s)	480, 820, 1217
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpmI	CTGGAG	1 cut(s)	1129
Bpu1102I	GCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	1 cut(s)	842
BsaJI	CCNNGG	1 cut(s)	1128
Bsc4I	CCNNNNNNNGG	4 cut(s)	287, 730, 995, 1088
Bse1I	ACTGG	3 cut(s)	1051, 1112, 1123
Bse3DI	GCAATG	1 cut(s)	637
BseDI	CCNNGG	1 cut(s)	1128
BseGI	GGATG	2 cut(s)	376, 1198
BseLI	CCNNNNNNNGG	4 cut(s)	287, 730, 995, 1088
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	1 cut(s)	738
BseNI	ACTGG	3 cut(s)	1051, 1112, 1123
BseRI	GAGGAG	1 cut(s)	318
Bsh1236I	CGCG	1 cut(s)	1057
BshFI	GGCC	1 cut(s)	1127
BshNI	GGYRCC	1 cut(s)	319
BsiHKCI	CYCGRG	1 cut(s)	1063
BslFI	GGGAC	1 cut(s)	1105
BslI	CCNNNNNNNGG	4 cut(s)	287, 730, 995, 1088
BsmFI	GGGAC	1 cut(s)	1105
BsmI	GAATGC	2 cut(s)	748, 922
BsnI	GGCC	1 cut(s)	1127
BsoBI	CYCGRG	1 cut(s)	1063
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	3 cut(s)	299, 1072, 1083
Bsp1720I	GCTNAGC	1 cut(s)	747
Bsp68I	TCGCGA	1 cut(s)	1057
BspANI	GGCC	1 cut(s)	1127
BspCNI	CTCAG	1 cut(s)	739
BspFNI	CGCG	1 cut(s)	1057
BspLI	GGNNCC	1 cut(s)	321
BspMI	ACCTGC	1 cut(s)	371
BspPI	GGATC	1 cut(s)	307
BspQI	GCTCTTC	1 cut(s)	1008
BspT107I	GGYRCC	1 cut(s)	319
BspTI	CTTAAG	1 cut(s)	1019
BsrDI	GCAATG	1 cut(s)	637
BsrI	ACTGG	3 cut(s)	1051, 1112, 1123
BssECI	CCNNGG	1 cut(s)	1128
BssMI	GATC	3 cut(s)	299, 1072, 1083
Bst4CI	ACNGT	2 cut(s)	316, 1096
Bst6I	CTCTTC	2 cut(s)	1008, 1153
BstAFI	CTTAAG	1 cut(s)	1019
BstDEI	CTNAG	3 cut(s)	671, 747, 1269
BstDSI	CCRYGG	1 cut(s)	1128
BstF5I	GGATG	2 cut(s)	376, 1198
BstFNI	CGCG	1 cut(s)	1057
BstKTI	GATC	3 cut(s)	302, 1075, 1086
BstMBI	GATC	3 cut(s)	299, 1072, 1083
BstMWI	GCNNNNNNNGC	1 cut(s)	879
BstSFI	CTRYAG	2 cut(s)	660, 1095
BstUI	CGCG	1 cut(s)	1057
BstV2I	GAAGAC	3 cut(s)	480, 820, 1217
BstXI	CCANNNNNNTGG	1 cut(s)	857
BsuRI	GGCC	1 cut(s)	1127
BtgI	CCRYGG	1 cut(s)	1128
BtsCI	GGATG	2 cut(s)	376, 1198
BtsIMutI	CAGTG	3 cut(s)	654, 785, 1116
BtuMI	TCGCGA	1 cut(s)	1057
BveI	ACCTGC	1 cut(s)	371
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	986
CseI	GACGC	1 cut(s)	702
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	1 cut(s)	1002
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	3 cut(s)	671, 747, 1269
DpnI	GATC	3 cut(s)	301, 1074, 1085
DpnII	GATC	3 cut(s)	299, 1072, 1083
Eam1104I	CTCTTC	2 cut(s)	1008, 1153
EarI	CTCTTC	2 cut(s)	1008, 1153
Eco24I	GRGCYC	1 cut(s)	659
Eco32I	GATATC	1 cut(s)	510
Eco47I	GGWCC	1 cut(s)	986
Eco57I	CTGAAG	4 cut(s)	474, 564, 790, 809
Eco88I	CYCGRG	1 cut(s)	1063
EcoRV	GATATC	1 cut(s)	510
EcoT38I	GRGCYC	1 cut(s)	659
FaeI	CATG	1 cut(s)	1005
FaqI	GGGAC	1 cut(s)	1105
FatI	CATG	1 cut(s)	1001
FbaI	TGATCA	1 cut(s)	1072
FokI	GGATG	2 cut(s)	383, 1205
FriOI	GRGCYC	1 cut(s)	659
FspBI	CTAG	5 cut(s)	86, 143, 870, 921, 1008
GsuI	CTGGAG	1 cut(s)	1129
HaeIII	GGCC	1 cut(s)	1127
HgaI	GACGC	1 cut(s)	702
Hin1II	CATG	1 cut(s)	1005
HincII	GTYRAC	2 cut(s)	847, 865
HindII	GTYRAC	2 cut(s)	847, 865
HindIII	AAGCTT	1 cut(s)	839
HphI	GGTGA	4 cut(s)	440, 574, 700, 713
Hpy166II	GTNNAC	2 cut(s)	847, 865
Hpy188I	TCNGA	5 cut(s)	400, 493, 601, 809, 1138
Hpy188III	TCNNGA	6 cut(s)	476, 776, 937, 969, 1056, 1070
Hpy8I	GTNNAC	2 cut(s)	847, 865
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	4 cut(s)	218, 550, 676, 724
HpyCH4III	ACNGT	2 cut(s)	316, 1096
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	1 cut(s)	879
HpyF3I	CTNAG	3 cut(s)	671, 747, 1269
Hsp92II	CATG	1 cut(s)	1005
KpnI	GGTACC	1 cut(s)	323
Ksp22I	TGATCA	1 cut(s)	1072
Kzo9I	GATC	3 cut(s)	299, 1072, 1083
LguI	GCTCTTC	1 cut(s)	1008
LmnI	GCTCC	3 cut(s)	998, 1101, 1265
LweI	GCATC	2 cut(s)	367, 529
MaeI	CTAG	5 cut(s)	86, 143, 870, 921, 1008
MaeIII	GTNAC	4 cut(s)	64, 202, 310, 1112
MalI	GATC	3 cut(s)	301, 1074, 1085
MboI	GATC	3 cut(s)	299, 1072, 1083
MfeI	CAATTG	2 cut(s)	513, 591
MhlI	GDGCHC	1 cut(s)	659
MlyI	GAGTC	6 cut(s)	494, 640, 833, 1075, 1120, 1133
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	2 cut(s)	192, 1020
MspCI	CTTAAG	1 cut(s)	1019
MunI	CAATTG	2 cut(s)	513, 591
Mva1269I	GAATGC	2 cut(s)	748, 922
MvnI	CGCG	1 cut(s)	1057
MwoI	GCNNNNNNNGC	1 cut(s)	879
NdeII	GATC	3 cut(s)	299, 1072, 1083
NlaIII	CATG	1 cut(s)	1005
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	2 cut(s)	202, 1112
NruI	TCGCGA	1 cut(s)	1057
PaqCI	CACCTGC	1 cut(s)	371
PciSI	GCTCTTC	1 cut(s)	1008
PcsI	WCGNNNNNNNCGW	1 cut(s)	1061
PctI	GAATGC	2 cut(s)	748, 922
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	8 cut(s)	337, 472, 494, 518, 596, 667, 718, 1133
PleI	GAGTC	6 cut(s)	493, 639, 832, 1074, 1119, 1133
PpsI	GAGTC	6 cut(s)	493, 639, 832, 1074, 1119, 1133
PspN4I	GGNNCC	1 cut(s)	321
PspPI	GGNCC	1 cut(s)	986
PstNI	CAGNNNCTG	1 cut(s)	62
RruI	TCGCGA	1 cut(s)	1057
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SapI	GCTCTTC	1 cut(s)	1008
SaqAI	TTAA	2 cut(s)	192, 1020
Sau3AI	GATC	3 cut(s)	299, 1072, 1083
Sau96I	GGNCC	1 cut(s)	986
SchI	GAGTC	6 cut(s)	494, 640, 833, 1075, 1120, 1133
SduI	GDGCHC	1 cut(s)	659
SfaNI	GCATC	2 cut(s)	367, 529
SfcI	CTRYAG	2 cut(s)	660, 1095
SinI	GGWCC	1 cut(s)	986
SmlI	CTYRAG	2 cut(s)	821, 1019
SmoI	CTYRAG	2 cut(s)	821, 1019
SpeI	ACTAGT	1 cut(s)	1007
SspMI	CTAG	5 cut(s)	86, 143, 870, 921, 1008
TaaI	ACNGT	2 cut(s)	316, 1096
TaqI	TCGA	7 cut(s)	124, 506, 521, 716, 878, 914, 1224
TfiI	GAWTC	8 cut(s)	337, 472, 494, 518, 596, 667, 718, 1133
Tru1I	TTAA	2 cut(s)	192, 1020
Tru9I	TTAA	2 cut(s)	192, 1020
TscAI	CASTG	3 cut(s)	654, 792, 1123
TseFI	GTSAC	2 cut(s)	202, 1112
Tsp45I	GTSAC	2 cut(s)	202, 1112
TspDTI	ATGAA	5 cut(s)	261, 387, 755, 954, 1026
TspGWI	ACGGA	1 cut(s)	1145
TspRI	CASTG	3 cut(s)	654, 792, 1123
Vha464I	CTTAAG	1 cut(s)	1019
VpaK11BI	GGWCC	1 cut(s)	986
XapI	RAATTY	1 cut(s)	928
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1159
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	5 cut(s)	86, 143, 870, 921, 1008

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.