Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010576

Physical Location & Seq

Genomic Coordinates Forward (+)

21972558 .. 21974195

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20470.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGAGAGGAGAAAGAGGATCCGATCTTGGACAGAATCTCAACGGTCATATTTTCAAGCTTTCAGATTCTTCGTCTTCAGTCCTCTCTCTCTCTCTCTCTCTCTCTTCCAGAGTAAAAGGCTTCCGAAAGAAGTCAGCTGTAAAAGTCGACAATCATTCATGGGGTGCTTTCCAAAGTGCTTCTCCACTTGTAAGCGCCGAAAGCTCAAAATTTCAGTCACTGTAACTCCCTTTAAGCACCATAGCATTGAAGTTGCTGAAGAAGCTCTTCAAATCCAACCTGCTGAAGCTGAACCCACAAAGCTAGAAGAGCTTATAAAAGCCATTAAACACAGCAGAGAATCAGAAATCAGCTTCGTTGGATTTACGGGTTTTGTGTTGTTTATAATTTATGTTTGTTCATTGATGTGTGTGATTAGAGAGAAGAGTGAAGAACAATCAAAGAATGGTGATATAAAGACAGTCACATTTGATTTGAATGTCGCGGCAAATGATGAAGAAACACCCACCAAGGAAGAACTCTCCAATGTATTGGTGGAAATCTGTGATGAGAAGGAGAATGAAGAGGAGACGAGAAAGGGGATCGAACCGAATTCGATTGTATCAAGTGTGGTATCACCATCATCTCATCCGTTGAATCATCGTTACGAAAAGTGCGAAAACAGTGAGGATGAAGATGATGATTGTGCTAACGCTGATGAGTTTGAGAGTAGTAAGCAAATCTTTGTTGAAGAAGAGTCTTCCGAGTCCTTGTTTTCGCTATCGATTGATTCTCGAAAACATGAAGTTTGTGATGATTCTGGAACAGAAGAGAAGGAGGTAAACAGTCCAATGCCAAAGCAGCAAAATGGAAGAAGAGATTACGGGAGGCAGAGTTTTCAGGCAGTGTTGACCCCCGTTGAAAATCTTGGTCAATCGAAGGAGGAGATCAAAGAAAAGTCAACTCCAACAGAAGCTCCAAAGCAGCAGCACAAAGAGAAGGAGAACATAAACATGGAGGTGGAGGAGGAGCAAGATTTGAAATTACCCTTTAGTCCGGAGCTTGCTTTGAAGCAGTCGAAACTGGGCACAAGGCCGAGGACAAAGTCGTCTTCTTGCATCGACACGAGCCTTTCGAGCTGGCTGGCTGAGTCTGAGACCACACCAATGTCAAATCCTAGTAGCAATAATTCCGTGGGGAACATGTTTAATGCACCCGGAAGCCGTGAAGATAGGCCAATCCTGGGAGCTTGGACAGCTGAGGAGCTTAAGCAGCTGTCGGCTTCTTCTACTCCGAAAAAGGTCACGAAGCCCGAGTCCAGAGGAAATGCCGATCATAGGAACTGTTGGGAGCTACTGGAATCGGACTGGGCAGGCTCTTCTTGCAGAGGAATGGCCAAACCAGTATGGGGAAACAGACAGGTAAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

471

Amino Acids

53.29

Weight (kDa)

5.36

Isoelectric Point (pI)

66.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01750
malus_domestica	MD04G1231100.v1.1 MD12G1249400.v1.1
prunus_persica	Prupe.6G350800_v2.0.a1 Prupe.6G350800_v2.0.a1
pyrus_communis	pycom04g20470 pycom12g22920
rosa_chinensis	RchiOBHm_Chr3g0449491
rosa_laevigata	RLG00000025822 RLG00000025825
rosa_multiflora	Rmu_sc0000430.1_g000018 Rmu_sc0019012.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427450
rosa_rugosa	Rorug02G0621600 Rorug02G0621700
rosa_samantha	Rh3AG019800 Rh3BG019800 Rh3CG018500 Rh3DG019800
rosa_wichuraiana	Rw3G001540 Rw3G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	317, 386
AasI	GACNNNNNNGTC	1 cut(s)	1087
Acc36I	ACCTGC	1 cut(s)	289
AccI	GTMKAC	1 cut(s)	148
AccII	CGCG	1 cut(s)	485
AccIII	TCCGGA	1 cut(s)	1036
AciI	CCGC	1 cut(s)	485
AclWI	GGATC	3 cut(s)	13, 26, 590
AcoI	YGGCCR	1 cut(s)	1374
AcsI	RAATTY	2 cut(s)	210, 592
AcuI	CTGAAG	3 cut(s)	61, 279, 306
AfiI	CCNNNNNNNGG	3 cut(s)	1223, 1317, 1388
AflII	CTTAAG	1 cut(s)	1247
AflIII	ACRYGT	1 cut(s)	1182
AgsI	TTSAA	9 cut(s)	56, 251, 272, 478, 637, 731, 902, 1021, 1051
AjnI	CCWGG	1 cut(s)	1221
Alw26I	GTCTC	2 cut(s)	563, 1130
AlwI	GGATC	3 cut(s)	13, 26, 590
AlwNI	CAGNNNCTG	1 cut(s)	221
Ama87I	CYCGRG	1 cut(s)	1292
Aor13HI	TCCGGA	1 cut(s)	1036
AoxI	GGCC	3 cut(s)	1073, 1214, 1374
ApeKI	GCWGC	4 cut(s)	841, 964, 967, 1252
ApoI	RAATTY	2 cut(s)	210, 592
ArsI	GACNNNNNNTTYG	4 cut(s)	201, 233, 1280, 1312
Asp700I	GAANNNNTTC	1 cut(s)	267
AspLEI	GCGC	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	1197
AsuHPI	GGTGA	2 cut(s)	461, 609
AvaI	CYCGRG	1 cut(s)	1292
BaeGI	GKGCMC	1 cut(s)	1070
BalI	TGGCCA	1 cut(s)	1376
BamHI	GGATCC	1 cut(s)	18
BauI	CACGAG	1 cut(s)	1105
BbsI	GAAGAC	3 cut(s)	67, 732, 1083
BbvCI	CCTCAGC	1 cut(s)	1239
BbvI	GCAGC	4 cut(s)	853, 976, 979, 1264
BccI	CCATC	1 cut(s)	628
BceAI	ACGGC	1 cut(s)	1188
BciT130I	CCWGG	1 cut(s)	1223
BcnI	CCSGG	1 cut(s)	1197
BcoDI	GTCTC	2 cut(s)	563, 1130
BfaI	CTAG	2 cut(s)	305, 1158
BfoI	RGCGCY	1 cut(s)	199
BfrI	CTTAAG	1 cut(s)	1247
BfuAI	ACCTGC	1 cut(s)	289
BisI	GCNGC	5 cut(s)	486, 842, 965, 968, 1253
BlsI	GCNGC	5 cut(s)	487, 843, 966, 969, 1254
Bme1390I	CCNGG	2 cut(s)	1197, 1223
BmeT110I	CYCGRG	1 cut(s)	1292
BmiI	GGNNCC	1 cut(s)	20
BmrFI	CCNGG	2 cut(s)	1197, 1223
BmrI	ACTGGG	2 cut(s)	1073, 1357
BmsI	GCATC	1 cut(s)	1107
BmuI	ACTGGG	2 cut(s)	1073, 1357
BpiI	GAAGAC	3 cut(s)	67, 732, 1083
Bpu10I	CCTNAGC	1 cut(s)	1239
BpuMI	CCSGG	1 cut(s)	1197
Bsa29I	ATCGAT	1 cut(s)	764
BsaI	GGTCTC	1 cut(s)	1130
BsaJI	CCNNGG	4 cut(s)	510, 1076, 1173, 1222
BsaWI	WCCGGW	1 cut(s)	1036
BsaXI	ACNNNNNCTCC	6 cut(s)	211, 241, 859, 889, 940, 970
Bsc4I	CCNNNNNNNGG	3 cut(s)	1223, 1317, 1388
Bse1I	ACTGG	4 cut(s)	1068, 1341, 1352, 1382
BseAI	TCCGGA	1 cut(s)	1036
BseBI	CCWGG	1 cut(s)	1223
BseCI	ATCGAT	1 cut(s)	764
BseDI	CCNNGG	4 cut(s)	510, 1076, 1173, 1222
BseGI	GGATG	2 cut(s)	628, 676
BseLI	CCNNNNNNNGG	3 cut(s)	1223, 1317, 1388
BseMII	CTCAG	3 cut(s)	1119, 1125, 1230
BseNI	ACTGG	4 cut(s)	1068, 1341, 1352, 1382
BseRI	GAGGAG	6 cut(s)	22, 581, 938, 1019, 1022, 1256
BseSI	GKGCMC	1 cut(s)	1070
BseXI	GCAGC	4 cut(s)	853, 976, 979, 1264
Bsh1236I	CGCG	1 cut(s)	485
BshFI	GGCC	3 cut(s)	1075, 1216, 1376
BshVI	ATCGAT	1 cut(s)	764
BsiHKCI	CYCGRG	1 cut(s)	1292
BsiSI	CCGG	2 cut(s)	1037, 1197
BslI	CCNNNNNNNGG	3 cut(s)	1223, 1317, 1388
BsmAI	GTCTC	2 cut(s)	563, 1130
BsmBI	CGTCTC	1 cut(s)	563
BsnI	GGCC	3 cut(s)	1075, 1216, 1376
Bso31I	GGTCTC	1 cut(s)	1130
BsoBI	CYCGRG	1 cut(s)	1292
Bsp1286I	GDGCHC	1 cut(s)	1070
Bsp13I	TCCGGA	1 cut(s)	1036
Bsp143I	GATC	5 cut(s)	18, 23, 582, 927, 1312
BspACI	CCGC	1 cut(s)	485
BspANI	GGCC	3 cut(s)	1075, 1216, 1376
BspCNI	CTCAG	3 cut(s)	1120, 1126, 1231
BspDI	ATCGAT	1 cut(s)	764
BspEI	TCCGGA	1 cut(s)	1036
BspFNI	CGCG	1 cut(s)	485
BspLI	GGNNCC	1 cut(s)	20
BspMI	ACCTGC	1 cut(s)	289
BspPI	GGATC	3 cut(s)	13, 26, 590
BspQI	GCTCTTC	3 cut(s)	273, 303, 1363
BspTI	CTTAAG	1 cut(s)	1247
BspTNI	GGTCTC	1 cut(s)	1130
BsrI	ACTGG	4 cut(s)	1068, 1341, 1352, 1382
BssECI	CCNNGG	4 cut(s)	510, 1076, 1173, 1222
BssMI	GATC	5 cut(s)	18, 23, 582, 927, 1312
BssSI	CACGAG	1 cut(s)	1105
BssT1I	CCWWGG	1 cut(s)	510
Bst2BI	CACGAG	1 cut(s)	1105
Bst2UI	CCWGG	1 cut(s)	1223
Bst4CI	ACNGT	6 cut(s)	45, 223, 463, 665, 827, 1325
Bst6I	CTCTTC	9 cut(s)	110, 273, 303, 419, 558, 729, 804, 850, 1363
BstAFI	CTTAAG	1 cut(s)	1247
BstC8I	GCNNGC	4 cut(s)	1044, 1121, 1125, 1354
BstDEI	CTNAG	3 cut(s)	1128, 1134, 1239
BstDSI	CCRYGG	1 cut(s)	1173
BstF5I	GGATG	2 cut(s)	628, 676
BstFNI	CGCG	1 cut(s)	485
BstH2I	RGCGCY	1 cut(s)	199
BstHHI	GCGC	1 cut(s)	198
BstKTI	GATC	5 cut(s)	21, 26, 585, 930, 1315
BstMAI	GTCTC	2 cut(s)	563, 1130
BstMBI	GATC	5 cut(s)	18, 23, 582, 927, 1312
BstMWI	GCNNNNNNNGC	8 cut(s)	202, 263, 310, 841, 1116, 1235, 1252, 1362
BstNI	CCWGG	1 cut(s)	1223
BstNSI	RCATGY	1 cut(s)	1186
BstSCI	CCNGG	2 cut(s)	1195, 1221
BstSLI	GKGCMC	1 cut(s)	1070
BstUI	CGCG	1 cut(s)	485
BstV1I	GCAGC	4 cut(s)	853, 976, 979, 1264
BstV2I	GAAGAC	3 cut(s)	67, 732, 1083
BstX2I	RGATCY	1 cut(s)	18
BstXI	CCANNNNNNTGG	1 cut(s)	532
BstYI	RGATCY	1 cut(s)	18
Bsu15I	ATCGAT	1 cut(s)	764
BsuRI	GGCC	3 cut(s)	1075, 1216, 1376
BsuTUI	ATCGAT	1 cut(s)	764
BtgI	CCRYGG	1 cut(s)	1173
BtsCI	GGATG	2 cut(s)	628, 676
BtsI	GCAGTG	1 cut(s)	891
BtsIMutI	CAGTG	3 cut(s)	219, 670, 891
BveI	ACCTGC	1 cut(s)	289
Cac8I	GCNNGC	4 cut(s)	1044, 1121, 1125, 1354
CaiI	CAGNNNCTG	1 cut(s)	221
CfoI	GCGC	1 cut(s)	198
ClaI	ATCGAT	1 cut(s)	764
CviAII	CATG	4 cut(s)	160, 782, 994, 1183
DdeI	CTNAG	3 cut(s)	1128, 1134, 1239
DpnI	GATC	5 cut(s)	20, 25, 584, 929, 1314
DpnII	GATC	5 cut(s)	18, 23, 582, 927, 1312
DrdI	GACNNNNNNGTC	1 cut(s)	1087
DseDI	GACNNNNNNGTC	1 cut(s)	1087
EaeI	YGGCCR	1 cut(s)	1374
Eam1104I	CTCTTC	9 cut(s)	110, 273, 303, 419, 558, 729, 804, 850, 1363
EarI	CTCTTC	9 cut(s)	110, 273, 303, 419, 558, 729, 804, 850, 1363
Eco130I	CCWWGG	1 cut(s)	510
Eco31I	GGTCTC	1 cut(s)	1130
Eco57I	CTGAAG	3 cut(s)	61, 279, 306
Eco88I	CYCGRG	1 cut(s)	1292
EcoRI	GAATTC	1 cut(s)	592
EcoRII	CCWGG	1 cut(s)	1221
EcoT14I	CCWWGG	1 cut(s)	510
ErhI	CCWWGG	1 cut(s)	510
Esp3I	CGTCTC	1 cut(s)	563
FaeI	CATG	4 cut(s)	163, 785, 997, 1186
FalI	AAGNNNNNCTT	4 cut(s)	252, 284, 707, 739
FatI	CATG	4 cut(s)	159, 781, 993, 1182
FblI	GTMKAC	1 cut(s)	148
Fnu4HI	GCNGC	5 cut(s)	486, 842, 965, 968, 1253
FokI	GGATG	2 cut(s)	615, 683
Fsp4HI	GCNGC	5 cut(s)	486, 842, 965, 968, 1253
FspBI	CTAG	2 cut(s)	305, 1158
GlaI	GCGC	1 cut(s)	197
GluI	GCNGC	5 cut(s)	486, 842, 965, 968, 1253
HaeII	RGCGCY	1 cut(s)	199
HaeIII	GGCC	3 cut(s)	1075, 1216, 1376
HapII	CCGG	2 cut(s)	1037, 1197
HhaI	GCGC	1 cut(s)	198
Hin1II	CATG	4 cut(s)	163, 785, 997, 1186
Hin6I	GCGC	1 cut(s)	196
HinP1I	GCGC	1 cut(s)	196
HincII	GTYRAC	3 cut(s)	149, 891, 942
HindII	GTYRAC	3 cut(s)	149, 891, 942
HindIII	AAGCTT	1 cut(s)	57
HpaII	CCGG	2 cut(s)	1037, 1197
HphI	GGTGA	2 cut(s)	461, 609
Hpy166II	GTNNAC	4 cut(s)	149, 823, 891, 942
Hpy188I	TCNGA	8 cut(s)	23, 65, 126, 346, 745, 1135, 1275, 1345
Hpy188III	TCNNGA	6 cut(s)	109, 774, 801, 1037, 1285, 1299
Hpy8I	GTNNAC	4 cut(s)	149, 823, 891, 942
HpyAV	CCTTC	4 cut(s)	547, 808, 913, 973
HpyCH4III	ACNGT	6 cut(s)	45, 223, 463, 665, 827, 1325
HpyCH4V	TGCA	3 cut(s)	1098, 1193, 1365
HpyF10VI	GCNNNNNNNGC	8 cut(s)	202, 263, 310, 841, 1116, 1235, 1252, 1362
HpyF3I	CTNAG	3 cut(s)	1128, 1134, 1239
Hsp92II	CATG	4 cut(s)	163, 785, 997, 1186
HspAI	GCGC	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	1036
Kzo9I	GATC	5 cut(s)	18, 23, 582, 927, 1312
LguI	GCTCTTC	3 cut(s)	273, 303, 1363
LmnI	GCTCC	6 cut(s)	961, 1009, 1039, 1226, 1243, 1330
Lsp1109I	GCAGC	4 cut(s)	853, 976, 979, 1264
LweI	GCATC	1 cut(s)	1107
MaeI	CTAG	2 cut(s)	305, 1158
MaeIII	GTNAC	5 cut(s)	217, 223, 463, 644, 1282
MalI	GATC	5 cut(s)	20, 25, 584, 929, 1314
MboI	GATC	5 cut(s)	18, 23, 582, 927, 1312
MflI	RGATCY	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	1070
MlsI	TGGCCA	1 cut(s)	1376
MluCI	AATT	5 cut(s)	210, 387, 592, 1022, 1168
MluNI	TGGCCA	1 cut(s)	1376
MlyI	GAGTC	4 cut(s)	746, 755, 1139, 1304
MmeI	TCCRAC	3 cut(s)	301, 340, 971
Mox20I	TGGCCA	1 cut(s)	1376
MroI	TCCGGA	1 cut(s)	1036
MroXI	GAANNNNTTC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	1376
MseI	TTAA	4 cut(s)	234, 327, 1188, 1248
MslI	CAYNNNNRTG	4 cut(s)	406, 992, 998, 1145
Msp20I	TGGCCA	1 cut(s)	1376
MspA1I	CMGCKG	3 cut(s)	138, 1238, 1255
MspCI	CTTAAG	1 cut(s)	1247
MspI	CCGG	2 cut(s)	1037, 1197
MspR9I	CCNGG	2 cut(s)	1197, 1223
MvaI	CCWGG	1 cut(s)	1223
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	8 cut(s)	202, 263, 310, 841, 1116, 1235, 1252, 1362
NciI	CCSGG	1 cut(s)	1197
NdeII	GATC	5 cut(s)	18, 23, 582, 927, 1312
NlaIII	CATG	4 cut(s)	163, 785, 997, 1186
NlaIV	GGNNCC	1 cut(s)	20
NmeAIII	GCCGAG	1 cut(s)	1101
NmuCI	GTSAC	3 cut(s)	217, 463, 1282
NspI	RCATGY	1 cut(s)	1186
PciI	ACATGT	1 cut(s)	1182
PciSI	GCTCTTC	3 cut(s)	273, 303, 1363
PcsI	WCGNNNNNNNCGW	2 cut(s)	654, 1112
PdmI	GAANNNNTTC	1 cut(s)	267
PfeI	GAWTC	7 cut(s)	35, 66, 341, 637, 770, 797, 1340
PflFI	GACNNNGTC	1 cut(s)	1084
PkrI	GCNGC	5 cut(s)	487, 843, 966, 969, 1254
PleI	GAGTC	4 cut(s)	745, 754, 1138, 1303
PpsI	GAGTC	4 cut(s)	745, 754, 1138, 1303
PscI	ACATGT	1 cut(s)	1182
PsiI	TTATAA	2 cut(s)	317, 386
Psp6I	CCWGG	1 cut(s)	1221
PspGI	CCWGG	1 cut(s)	1221
PspN4I	GGNNCC	1 cut(s)	20
PstNI	CAGNNNCTG	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	18
PsyI	GACNNNGTC	1 cut(s)	1084
PvuII	CAGCTG	3 cut(s)	138, 1238, 1255
RseI	CAYNNNNRTG	4 cut(s)	406, 992, 998, 1145
SalI	GTCGAC	1 cut(s)	147
SapI	GCTCTTC	3 cut(s)	273, 303, 1363
SaqAI	TTAA	4 cut(s)	234, 327, 1188, 1248
SatI	GCNGC	5 cut(s)	486, 842, 965, 968, 1253
Sau3AI	GATC	5 cut(s)	18, 23, 582, 927, 1312
SchI	GAGTC	4 cut(s)	746, 755, 1139, 1304
ScrFI	CCNGG	2 cut(s)	1197, 1223
SduI	GDGCHC	1 cut(s)	1070
SfaNI	GCATC	1 cut(s)	1107
SmiMI	CAYNNNNRTG	4 cut(s)	406, 992, 998, 1145
SmlI	CTYRAG	1 cut(s)	1247
SmoI	CTYRAG	1 cut(s)	1247
Sse9I	AATT	5 cut(s)	210, 387, 592, 1022, 1168
SsiI	CCGC	1 cut(s)	485
SspMI	CTAG	2 cut(s)	305, 1158
StyD4I	CCNGG	2 cut(s)	1195, 1221
StyI	CCWWGG	1 cut(s)	510
TaaI	ACNGT	6 cut(s)	45, 223, 463, 665, 827, 1325
TaqI	TCGA	9 cut(s)	148, 585, 596, 764, 775, 917, 1058, 1101, 1115
TasI	AATT	5 cut(s)	210, 387, 592, 1022, 1168
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	7 cut(s)	35, 66, 341, 637, 770, 797, 1340
Tru1I	TTAA	4 cut(s)	234, 327, 1188, 1248
Tru9I	TTAA	4 cut(s)	234, 327, 1188, 1248
TscAI	CASTG	3 cut(s)	226, 670, 891
TseFI	GTSAC	3 cut(s)	217, 463, 1282
TseI	GCWGC	4 cut(s)	841, 964, 967, 1252
Tsp45I	GTSAC	3 cut(s)	217, 463, 1282
TspDTI	ATGAA	6 cut(s)	148, 390, 510, 576, 687, 798
TspGWI	ACGGA	2 cut(s)	621, 1162
TspRI	CASTG	3 cut(s)	226, 670, 891
Tth111I	GACNNNGTC	1 cut(s)	1084
Vha464I	CTTAAG	1 cut(s)	1247
XapI	RAATTY	2 cut(s)	210, 592
XceI	RCATGY	1 cut(s)	1186
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmiI	GTMKAC	1 cut(s)	148
XmnI	GAANNNNTTC	1 cut(s)	267
XspI	CTAG	2 cut(s)	305, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.