Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0010576

Physical Location & Seq

Genomic Coordinates Reverse (-)

1291667 .. 1293242

Gene Structure 1576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G001540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGGTTGCTTTCCAGCTTGTTTCACTTCTTCTAATAGCCGAAAGCACCGAAAATCAGTGGCTGTAACTCCCTGTATACAAAACCAAGAACAAATCGTTGAAGCTACCGAAGAAGGAGCTGTTCTATTTGAACCCACAAAGCTAGATGACATTATCAAACCCATTACAGAATCCAAAGAGGTTATTGAAGAACAAACCAAGAATGATGTTAAAAGGAAAGTGACATTTGATTTGGAGGAAGAAGGCATTGATGAGAAACAGAATGAAAATAAAGAGGAAACAGCAAAAGAGATTGAACCAATTTTGGGTTCTATTGGATCAAGTGTAGTTACTGTGGTACCATCTCCGCCATTGAATCATAGGTACGAGAATTGCTCAAACAGTGAGGATGAAGATGCAGGTGTAATAGATTTATCAGGAAGTGATTTCAATGGAGATGATTATGGTGGGAGTGTTGATGATGAGGTTGAGAGCAACAAACAAAGTGTGATTCAAGAACAAGAGTCTTCAGAATCTTTGTTTTCGATATCAATTGATTCGAGGAAGCGAGTTAGTGATGCTGAAGAAGATGAGAAGGAGGTGAATAGTCCAATGCCAAAGCCAAAGCCAATTGAATCAGACCAAAGTGGTAGAGATAATAGTATCAGGAGTCAGCATTGCCATTCAGTGTTGAGCCCTATAGAGAATCTTAGTCAATGGAAGGAGGTGAAAGCGAAAGCAGTTCCTTTAGCTTCGAATCACCCAGAGAAGGAGAATATGAATGCTGAGCAAGATTTCAACATACCAATTAGTCCAGAGCCTACACTGAAGCTGTCAAAACACTTCAGAAGAAGACCACTTGAGTCCAATGACCTAAAACTTGTTGACCAAGAAAATGGGGTTGACACTAGCCTTTCGAGCTGGTTGGTTTCGAATGCTAGTGAAAATTCTGTGGGGAACTTGATGTGTGAGGGAGTGAGTTCATCAAGAAGTCTTGGAGATGGACCAATTTTAGGAGCATGGACTAGTGAAGAGCTTAAGCAGCTGTCTAATTCTTCTACTCTAAACCAGTCGCGAAGCCCGAGTCCTGATCAAATACCGATCATAGGGACTGTAGGGAGCTACTGGAGTCACACTGGTCAGGCCACGGATTCAGACTCAAACTCTTCCAGCAGAGGAATGGAAAACAAAGCAGGGAGGAACAGAGAGGATGAGAAAGTAAAATGGAAGACTATACCGTTCGAGGCAAAATTGGAGAGAGTTATAGATATGGGCATACTTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

422

Amino Acids

46.49

Weight (kDa)

4.68

Isoelectric Point (pI)

62.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01750
malus_domestica	MD04G1231100.v1.1 MD12G1249400.v1.1
prunus_persica	Prupe.6G350800_v2.0.a1 Prupe.6G350800_v2.0.a1
pyrus_communis	pycom04g20470 pycom12g22920
rosa_chinensis	RchiOBHm_Chr3g0449491
rosa_laevigata	RLG00000025822 RLG00000025825
rosa_multiflora	Rmu_sc0000430.1_g000018 Rmu_sc0019012.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427450
rosa_rugosa	Rorug02G0621600 Rorug02G0621700
rosa_samantha	Rh3AG019800 Rh3BG019800 Rh3CG018500 Rh3DG019800
rosa_wichuraiana	Rw3G001540 Rw3G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	389
Acc65I	GGTACC	1 cut(s)	337
AccB1I	GGYRCC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	76
AccII	CGCG	1 cut(s)	1054
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	325
AcsI	RAATTY	1 cut(s)	925
AcuI	CTGAAG	4 cut(s)	492, 582, 808, 827
AfaI	GTAC	2 cut(s)	339, 365
AfiI	CCNNNNNNNGG	4 cut(s)	305, 748, 992, 1085
AflII	CTTAAG	1 cut(s)	1016
AgsI	TTSAA	9 cut(s)	101, 131, 188, 296, 355, 430, 494, 614, 778
AhlI	ACTAGT	1 cut(s)	1004
AjuI	GAANNNNNNNTTGG	2 cut(s)	292, 324
AlwI	GGATC	1 cut(s)	325
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	1060
AoxI	GGCC	1 cut(s)	1122
ApeKI	GCWGC	1 cut(s)	1021
ApoI	RAATTY	1 cut(s)	925
ArsI	GACNNNNNNTTYG	4 cut(s)	214, 246, 1048, 1080
Asp718I	GGTACC	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	983
AsuHPI	GGTGA	3 cut(s)	592, 718, 731
AsuII	TTCGAA	2 cut(s)	734, 911
AvaI	CYCGRG	1 cut(s)	1060
AvaII	GGWCC	1 cut(s)	983
BaeI	ACNNNNGTAYC	2 cut(s)	321, 354
BanI	GGYRCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	677
BbsI	GAAGAC	3 cut(s)	498, 838, 1214
BbvI	GCAGC	1 cut(s)	1033
BccI	CCATC	2 cut(s)	349, 974
BclI	TGATCA	1 cut(s)	1069
BcuI	ACTAGT	1 cut(s)	1004
BfaI	CTAG	4 cut(s)	143, 888, 918, 1005
BfmI	CTRYAG	2 cut(s)	678, 1092
BfrI	CTTAAG	1 cut(s)	1016
BfuAI	ACCTGC	1 cut(s)	389
BisI	GCNGC	1 cut(s)	1022
BlpI	GCTNAGC	1 cut(s)	765
BlsI	GCNGC	1 cut(s)	1023
Bme18I	GGWCC	1 cut(s)	983
BmeT110I	CYCGRG	1 cut(s)	1060
BmgT120I	GGNCC	1 cut(s)	983
BmiI	GGNNCC	1 cut(s)	339
BmsI	GCATC	2 cut(s)	385, 547
BpiI	GAAGAC	3 cut(s)	498, 838, 1214
BplI	GAGNNNNNCTC	2 cut(s)	359, 391
BpmI	CTGGAG	1 cut(s)	1126
Bpu1102I	GCTNAGC	1 cut(s)	765
Bpu14I	TTCGAA	2 cut(s)	734, 911
BpuEI	CTTGAG	1 cut(s)	860
BsaJI	CCNNGG	1 cut(s)	1125
Bsc4I	CCNNNNNNNGG	4 cut(s)	305, 748, 992, 1085
Bse1I	ACTGG	3 cut(s)	1048, 1109, 1120
Bse3DI	GCAATG	1 cut(s)	655
BseDI	CCNNGG	1 cut(s)	1125
BseGI	GGATG	2 cut(s)	394, 1195
BseLI	CCNNNNNNNGG	4 cut(s)	305, 748, 992, 1085
BseMI	GCAATG	1 cut(s)	655
BseMII	CTCAG	1 cut(s)	756
BseNI	ACTGG	3 cut(s)	1048, 1109, 1120
BseXI	GCAGC	1 cut(s)	1033
Bsh1236I	CGCG	1 cut(s)	1054
BshFI	GGCC	1 cut(s)	1124
BshNI	GGYRCC	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	1060
BslFI	GGGAC	1 cut(s)	1102
BslI	CCNNNNNNNGG	4 cut(s)	305, 748, 992, 1085
BsmFI	GGGAC	1 cut(s)	1102
BsmI	GAATGC	2 cut(s)	766, 919
BsnI	GGCC	1 cut(s)	1124
BsoBI	CYCGRG	1 cut(s)	1060
Bsp119I	TTCGAA	2 cut(s)	734, 911
Bsp1286I	GDGCHC	1 cut(s)	677
Bsp143I	GATC	3 cut(s)	317, 1069, 1080
Bsp1720I	GCTNAGC	1 cut(s)	765
Bsp68I	TCGCGA	1 cut(s)	1054
BspACI	CCGC	1 cut(s)	347
BspANI	GGCC	1 cut(s)	1124
BspCNI	CTCAG	1 cut(s)	757
BspFNI	CGCG	1 cut(s)	1054
BspLI	GGNNCC	1 cut(s)	339
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	1 cut(s)	325
BspQI	GCTCTTC	1 cut(s)	1005
BspT104I	TTCGAA	2 cut(s)	734, 911
BspT107I	GGYRCC	1 cut(s)	337
BspTI	CTTAAG	1 cut(s)	1016
BsrDI	GCAATG	1 cut(s)	655
BsrI	ACTGG	3 cut(s)	1048, 1109, 1120
BssECI	CCNNGG	1 cut(s)	1125
BssMI	GATC	3 cut(s)	317, 1069, 1080
BssNAI	GTATAC	1 cut(s)	77
Bst1107I	GTATAC	1 cut(s)	77
Bst4CI	ACNGT	4 cut(s)	334, 383, 1093, 1218
Bst6I	CTCTTC	2 cut(s)	1005, 1150
BstAFI	CTTAAG	1 cut(s)	1016
BstBI	TTCGAA	2 cut(s)	734, 911
BstDEI	CTNAG	3 cut(s)	689, 765, 1266
BstDSI	CCRYGG	1 cut(s)	1125
BstF5I	GGATG	2 cut(s)	394, 1195
BstFNI	CGCG	1 cut(s)	1054
BstKTI	GATC	3 cut(s)	320, 1072, 1083
BstMBI	GATC	3 cut(s)	317, 1069, 1080
BstMWI	GCNNNNNNNGC	2 cut(s)	897, 1021
BstSFI	CTRYAG	2 cut(s)	678, 1092
BstUI	CGCG	1 cut(s)	1054
BstV1I	GCAGC	1 cut(s)	1033
BstV2I	GAAGAC	3 cut(s)	498, 838, 1214
BstXI	CCANNNNNNTGG	1 cut(s)	875
BstZ17I	GTATAC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	1124
BtgI	CCRYGG	1 cut(s)	1125
BtsCI	GGATG	2 cut(s)	394, 1195
BtsIMutI	CAGTG	5 cut(s)	63, 388, 672, 803, 1113
BtuMI	TCGCGA	1 cut(s)	1054
BveI	ACCTGC	1 cut(s)	389
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	983
Csp6I	GTAC	2 cut(s)	338, 364
CviAII	CATG	1 cut(s)	999
CviQI	GTAC	2 cut(s)	338, 364
DdeI	CTNAG	3 cut(s)	689, 765, 1266
DpnI	GATC	3 cut(s)	319, 1071, 1082
DpnII	GATC	3 cut(s)	317, 1069, 1080
Eam1104I	CTCTTC	2 cut(s)	1005, 1150
EarI	CTCTTC	2 cut(s)	1005, 1150
EciI	GGCGGA	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	677
Eco32I	GATATC	1 cut(s)	528
Eco47I	GGWCC	1 cut(s)	983
Eco57I	CTGAAG	4 cut(s)	492, 582, 808, 827
Eco88I	CYCGRG	1 cut(s)	1060
EcoRV	GATATC	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	677
FaeI	CATG	1 cut(s)	1002
FaqI	GGGAC	1 cut(s)	1102
FatI	CATG	1 cut(s)	998
FbaI	TGATCA	1 cut(s)	1069
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	1022
FokI	GGATG	2 cut(s)	401, 1202
FriOI	GRGCYC	1 cut(s)	677
Fsp4HI	GCNGC	1 cut(s)	1022
FspBI	CTAG	4 cut(s)	143, 888, 918, 1005
GluI	GCNGC	1 cut(s)	1022
GsuI	CTGGAG	1 cut(s)	1126
HaeIII	GGCC	1 cut(s)	1124
Hin1II	CATG	1 cut(s)	1002
HincII	GTYRAC	2 cut(s)	865, 883
HindII	GTYRAC	2 cut(s)	865, 883
HphI	GGTGA	3 cut(s)	592, 718, 731
Hpy166II	GTNNAC	3 cut(s)	77, 865, 883
Hpy188I	TCNGA	4 cut(s)	511, 619, 827, 1135
Hpy188III	TCNNGA	7 cut(s)	417, 494, 646, 794, 966, 1053, 1067
Hpy8I	GTNNAC	3 cut(s)	77, 865, 883
HpyAV	CCTTC	5 cut(s)	107, 236, 568, 694, 742
HpyCH4III	ACNGT	4 cut(s)	334, 383, 1093, 1218
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	897, 1021
HpyF3I	CTNAG	3 cut(s)	689, 765, 1266
Hsp92II	CATG	1 cut(s)	1002
KpnI	GGTACC	1 cut(s)	341
Ksp22I	TGATCA	1 cut(s)	1069
Kzo9I	GATC	3 cut(s)	317, 1069, 1080
LguI	GCTCTTC	1 cut(s)	1005
LmnI	GCTCC	4 cut(s)	116, 995, 1098, 1262
Lsp1109I	GCAGC	1 cut(s)	1033
LweI	GCATC	2 cut(s)	385, 547
MaeI	CTAG	4 cut(s)	143, 888, 918, 1005
MaeIII	GTNAC	4 cut(s)	64, 220, 328, 1109
MalI	GATC	3 cut(s)	319, 1071, 1082
MboI	GATC	3 cut(s)	317, 1069, 1080
MfeI	CAATTG	2 cut(s)	531, 609
MhlI	GDGCHC	1 cut(s)	677
MluCI	AATT	9 cut(s)	300, 370, 531, 609, 786, 925, 987, 1030, 1229
MlyI	GAGTC	6 cut(s)	512, 658, 851, 1072, 1117, 1130
MseI	TTAA	2 cut(s)	210, 1017
MspA1I	CMGCKG	1 cut(s)	1024
MspCI	CTTAAG	1 cut(s)	1016
MunI	CAATTG	2 cut(s)	531, 609
Mva1269I	GAATGC	2 cut(s)	766, 919
MvnI	CGCG	1 cut(s)	1054
MwoI	GCNNNNNNNGC	2 cut(s)	897, 1021
NdeII	GATC	3 cut(s)	317, 1069, 1080
NlaIII	CATG	1 cut(s)	1002
NlaIV	GGNNCC	1 cut(s)	339
NmuCI	GTSAC	2 cut(s)	220, 1109
NruI	TCGCGA	1 cut(s)	1054
NspV	TTCGAA	2 cut(s)	734, 911
PaqCI	CACCTGC	1 cut(s)	389
PciSI	GCTCTTC	1 cut(s)	1005
PcsI	WCGNNNNNNNCGW	1 cut(s)	1058
PctI	GAATGC	2 cut(s)	766, 919
PfeI	GAWTC	9 cut(s)	170, 355, 490, 512, 536, 614, 685, 736, 1130
PkrI	GCNGC	1 cut(s)	1023
PleI	GAGTC	6 cut(s)	511, 657, 850, 1071, 1116, 1130
PpsI	GAGTC	6 cut(s)	511, 657, 850, 1071, 1116, 1130
PspN4I	GGNNCC	1 cut(s)	339
PspPI	GGNCC	1 cut(s)	983
PstNI	CAGNNNCTG	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	1024
RruI	TCGCGA	1 cut(s)	1054
RsaI	GTAC	2 cut(s)	339, 365
RsaNI	GTAC	2 cut(s)	338, 364
SapI	GCTCTTC	1 cut(s)	1005
SaqAI	TTAA	2 cut(s)	210, 1017
SatI	GCNGC	1 cut(s)	1022
Sau3AI	GATC	3 cut(s)	317, 1069, 1080
Sau96I	GGNCC	1 cut(s)	983
SchI	GAGTC	6 cut(s)	512, 658, 851, 1072, 1117, 1130
SduI	GDGCHC	1 cut(s)	677
SfaNI	GCATC	2 cut(s)	385, 547
SfcI	CTRYAG	2 cut(s)	678, 1092
SfuI	TTCGAA	2 cut(s)	734, 911
SinI	GGWCC	1 cut(s)	983
SmlI	CTYRAG	2 cut(s)	839, 1016
SmoI	CTYRAG	2 cut(s)	839, 1016
SpeI	ACTAGT	1 cut(s)	1004
Sse9I	AATT	9 cut(s)	300, 370, 531, 609, 786, 925, 987, 1030, 1229
SsiI	CCGC	1 cut(s)	347
SspMI	CTAG	4 cut(s)	143, 888, 918, 1005
TaaI	ACNGT	4 cut(s)	334, 383, 1093, 1218
TaqI	TCGA	6 cut(s)	524, 539, 734, 896, 911, 1221
TasI	AATT	9 cut(s)	300, 370, 531, 609, 786, 925, 987, 1030, 1229
TfiI	GAWTC	9 cut(s)	170, 355, 490, 512, 536, 614, 685, 736, 1130
Tru1I	TTAA	2 cut(s)	210, 1017
Tru9I	TTAA	2 cut(s)	210, 1017
TscAI	CASTG	5 cut(s)	63, 388, 672, 810, 1120
TseFI	GTSAC	2 cut(s)	220, 1109
TseI	GCWGC	1 cut(s)	1021
Tsp45I	GTSAC	2 cut(s)	220, 1109
TspDTI	ATGAA	4 cut(s)	279, 405, 773, 951
TspGWI	ACGGA	1 cut(s)	1142
TspRI	CASTG	5 cut(s)	63, 388, 672, 810, 1120
Vha464I	CTTAAG	1 cut(s)	1016
VpaK11BI	GGWCC	1 cut(s)	983
XapI	RAATTY	1 cut(s)	925
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1156
XmiI	GTMKAC	1 cut(s)	76
XspI	CTAG	4 cut(s)	143, 888, 918, 1005

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.