Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010576

Physical Location & Seq

Genomic Coordinates Forward (+)

23670436 .. 23671906

Gene Structure 1471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g22920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGGTGCTTTCCAAAGTGCTTCTCTACTTGTAAGCGCCGAAAGCTCAAAAAATCAGTCACTGTAAACCCCTTTAAACACCAAAGCATTGAAGTTGCTGAACAAGCTGTTCAAATCCAACCTGCTGAAGCTGAACCCACAAAGCTAGAAGAATTTATAGAAGCCATTAAACCCAGCAAAGAATCAGTAGAGGAGATTGAAGAACAATCAAAGAATGGTGACAAAAAGAAAGTCACATTTGATTTGAATGTCGAGGCAAATGATGAAGAAACTCCCACCAAGGAAGAAGTCTCCAATTTATTGGTGGAAATTTGTGATGCGAAGGAGAATGAAGAGGAAGCGCGAAAAGGGATCAAACCGAATTCGGTTGTATCAAGTATGGTATCACCATCAACTCATCCATTGAATCATCGATACAAAAATTGCGAAAACAGTGAGGATGAAGATGATGATTGTGCTAATGCTGATGAGTTCGAGAGTAGTAAGCAAACCTTTGTTGAGGAAGAGTCTTCCGAGTCCTTGTTTTCGCTATCGATTGATTCTCGAAAACAACAAGTTTGCGATGATGCTGGAACAGATGAGAAGGAGGTGAATAGTCCAATGCCAAAGCAGCAAAATGGCAGAAGAGATTACAGGAGACAGAGTTCTCACTTTCAGGCAGTATCGAACCCCATTGAAAATCTTGCTCAATGGAAGGAGGAGGTCAACGGAAAGTCAACTCCAACAGAAGCTTCAAAGCAGCAGCAGCACCAAGAGAAGGAGAACATGCACACGGAGGTGGAGGAGCAGGATTTGAAATTACACCTTAGTCCGGAGCCTGCTTTGAAGCTGTCAAAACTCTGCGCAAGGCCGAGGACAAAGTCATCTTCTTGCATAGACACGAGCCTTTCGAGCTGGCTGGTTGAGTCTGAGACCACACCGGAGTCAAATGCAAGTAGTAAGAATTCTGTGGGGAACAAGTTTAATTCACCCGGAAGCCGTGAAGATAGGCCAATTCTGGGAGCTTGGACAACTGAAGAGCTTAAGCAGTTGTCGGCTTCTTCTACTCCAAAAAAAGGGTCACCAAGCCCGAGTCCCGCGGAAATGCCGATCATTGGTACTGTTGGGAGCTACTGGAGTCGTACCGGACAGGCCATGGATTCGGACTCAGGCTCTTCTTGCAGAGGAAGGCCGAAATCAACAGGGAAAAACAGACTGGTAAGAGATTTGTTCGAACTGATATTTCCGTTCATTCAATCGATAATTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

417

Amino Acids

46.47

Weight (kDa)

5.15

Isoelectric Point (pI)

68.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01750
malus_domestica	MD04G1231100.v1.1 MD12G1249400.v1.1
prunus_persica	Prupe.6G350800_v2.0.a1 Prupe.6G350800_v2.0.a1
pyrus_communis	pycom04g20470 pycom12g22920
rosa_chinensis	RchiOBHm_Chr3g0449491
rosa_laevigata	RLG00000025822 RLG00000025825
rosa_multiflora	Rmu_sc0000430.1_g000018 Rmu_sc0019012.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427450
rosa_rugosa	Rorug02G0621600 Rorug02G0621700
rosa_samantha	Rh3AG019800 Rh3BG019800 Rh3CG018500 Rh3DG019800
rosa_wichuraiana	Rw3G001540 Rw3G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	844
Acc36I	ACCTGC	1 cut(s)	130
AccII	CGCG	2 cut(s)	343, 1079
AccIII	TCCGGA	1 cut(s)	811
AciI	CCGC	2 cut(s)	1077, 1079
AclWI	GGATC	1 cut(s)	359
AcsI	RAATTY	4 cut(s)	152, 309, 361, 943
AcuI	CTGAAG	2 cut(s)	147, 1035
AfaI	GTAC	2 cut(s)	1099, 1123
AfiI	CCNNNNNNNGG	5 cut(s)	757, 811, 998, 1055, 1094
AflII	CTTAAG	1 cut(s)	1022
AjuI	GAANNNNNNNTTGG	2 cut(s)	715, 747
AleI	CACNNNNGTG	1 cut(s)	776
AloI	GAACNNNNNNTCC	2 cut(s)	628, 660
Alw26I	GTCTC	3 cut(s)	295, 631, 905
AlwI	GGATC	1 cut(s)	359
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	1069
Aor13HI	TCCGGA	1 cut(s)	811
AoxI	GGCC	4 cut(s)	848, 989, 1131, 1169
ApeKI	GCWGC	4 cut(s)	610, 739, 742, 745
ApoI	RAATTY	4 cut(s)	152, 309, 361, 943
ArsI	GACNNNNNNTTYG	6 cut(s)	42, 74, 216, 248, 1043, 1075
AspLEI	GCGC	3 cut(s)	39, 343, 845
AsuC2I	CCSGG	1 cut(s)	972
AsuHPI	GGTGA	5 cut(s)	230, 378, 601, 960, 1053
AsuII	TTCGAA	1 cut(s)	1212
AvaI	CYCGRG	1 cut(s)	1069
BauI	CACGAG	1 cut(s)	880
BbsI	GAAGAC	1 cut(s)	501
BbvI	GCAGC	4 cut(s)	622, 751, 754, 757
BccI	CCATC	1 cut(s)	397
BceAI	ACGGC	1 cut(s)	963
BcnI	CCSGG	1 cut(s)	972
BcoDI	GTCTC	3 cut(s)	295, 631, 905
BfaI	CTAG	1 cut(s)	146
BfoI	RGCGCY	1 cut(s)	40
BfrI	CTTAAG	1 cut(s)	1022
BfuAI	ACCTGC	1 cut(s)	130
BisI	GCNGC	4 cut(s)	611, 740, 743, 746
BlsI	GCNGC	4 cut(s)	612, 741, 744, 747
Bme1390I	CCNGG	1 cut(s)	972
BmeT110I	CYCGRG	1 cut(s)	1069
BmiI	GGNNCC	1 cut(s)	816
BmrFI	CCNGG	1 cut(s)	972
BmsI	GCATC	2 cut(s)	307, 556
BpiI	GAAGAC	1 cut(s)	501
BpmI	CTGGAG	1 cut(s)	1135
Bpu14I	TTCGAA	1 cut(s)	1212
BpuMI	CCSGG	1 cut(s)	972
Bsa29I	ATCGAT	3 cut(s)	412, 533, 1238
BsaI	GGTCTC	1 cut(s)	905
BsaJI	CCNNGG	4 cut(s)	279, 851, 1077, 1134
BsaWI	WCCGGW	3 cut(s)	811, 919, 1124
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	5 cut(s)	757, 811, 998, 1055, 1094
Bse1I	ACTGG	2 cut(s)	1118, 1200
BseAI	TCCGGA	1 cut(s)	811
BseCI	ATCGAT	3 cut(s)	412, 533, 1238
BseDI	CCNNGG	4 cut(s)	279, 851, 1077, 1134
BseGI	GGATG	2 cut(s)	397, 445
BseLI	CCNNNNNNNGG	5 cut(s)	757, 811, 998, 1055, 1094
BseMII	CTCAG	2 cut(s)	900, 1161
BseNI	ACTGG	2 cut(s)	1118, 1200
BseRI	GAGGAG	3 cut(s)	206, 713, 797
BseXI	GCAGC	4 cut(s)	622, 751, 754, 757
BseYI	CCCAGC	1 cut(s)	173
Bsh1236I	CGCG	2 cut(s)	343, 1079
BshFI	GGCC	4 cut(s)	850, 991, 1133, 1171
BshVI	ATCGAT	3 cut(s)	412, 533, 1238
BsiHKCI	CYCGRG	1 cut(s)	1069
BsiSI	CCGG	4 cut(s)	812, 920, 972, 1125
BslFI	GGGAC	1 cut(s)	1059
BslI	CCNNNNNNNGG	5 cut(s)	757, 811, 998, 1055, 1094
BsmAI	GTCTC	3 cut(s)	295, 631, 905
BsmFI	GGGAC	1 cut(s)	1059
BsnI	GGCC	4 cut(s)	850, 991, 1133, 1171
Bso31I	GGTCTC	1 cut(s)	905
BsoBI	CYCGRG	1 cut(s)	1069
Bsp119I	TTCGAA	1 cut(s)	1212
Bsp13I	TCCGGA	1 cut(s)	811
Bsp143I	GATC	2 cut(s)	351, 1089
Bsp19I	CCATGG	1 cut(s)	1134
BspACI	CCGC	2 cut(s)	1077, 1079
BspANI	GGCC	4 cut(s)	850, 991, 1133, 1171
BspCNI	CTCAG	2 cut(s)	901, 1160
BspDI	ATCGAT	3 cut(s)	412, 533, 1238
BspEI	TCCGGA	1 cut(s)	811
BspFNI	CGCG	2 cut(s)	343, 1079
BspLI	GGNNCC	1 cut(s)	816
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	1 cut(s)	359
BspQI	GCTCTTC	2 cut(s)	1011, 1159
BspT104I	TTCGAA	1 cut(s)	1212
BspTI	CTTAAG	1 cut(s)	1022
BspTNI	GGTCTC	1 cut(s)	905
BsrI	ACTGG	2 cut(s)	1118, 1200
BssECI	CCNNGG	4 cut(s)	279, 851, 1077, 1134
BssMI	GATC	2 cut(s)	351, 1089
BssSI	CACGAG	1 cut(s)	880
BssT1I	CCWWGG	2 cut(s)	279, 1134
Bst2BI	CACGAG	1 cut(s)	880
Bst4CI	ACNGT	3 cut(s)	64, 434, 1102
Bst6I	CTCTTC	5 cut(s)	327, 498, 619, 1011, 1159
BstAFI	CTTAAG	1 cut(s)	1022
BstBI	TTCGAA	1 cut(s)	1212
BstC8I	GCNNGC	2 cut(s)	819, 896
BstDEI	CTNAG	3 cut(s)	806, 909, 1147
BstDSI	CCRYGG	2 cut(s)	1077, 1134
BstEII	GGTNACC	1 cut(s)	1059
BstF5I	GGATG	2 cut(s)	397, 445
BstFNI	CGCG	2 cut(s)	343, 1079
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	3 cut(s)	39, 343, 845
BstKTI	GATC	2 cut(s)	354, 1092
BstMAI	GTCTC	3 cut(s)	295, 631, 905
BstMBI	GATC	2 cut(s)	351, 1089
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 104, 610, 745, 891, 1158
BstNSI	RCATGY	1 cut(s)	769
BstPI	GGTNACC	1 cut(s)	1059
BstSCI	CCNGG	1 cut(s)	970
BstUI	CGCG	2 cut(s)	343, 1079
BstV1I	GCAGC	4 cut(s)	622, 751, 754, 757
BstV2I	GAAGAC	1 cut(s)	501
BstXI	CCANNNNNNTGG	1 cut(s)	301
Bsu15I	ATCGAT	3 cut(s)	412, 533, 1238
BsuRI	GGCC	4 cut(s)	850, 991, 1133, 1171
BsuTUI	ATCGAT	3 cut(s)	412, 533, 1238
BtgI	CCRYGG	2 cut(s)	1077, 1134
BtgZI	GCGATG	1 cut(s)	576
BtsCI	GGATG	2 cut(s)	397, 445
BtsIMutI	CAGTG	2 cut(s)	60, 439
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	2 cut(s)	819, 896
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	3 cut(s)	39, 343, 845
Cfr42I	CCGCGG	1 cut(s)	1080
ClaI	ATCGAT	3 cut(s)	412, 533, 1238
Csp6I	GTAC	2 cut(s)	1098, 1122
CviAII	CATG	2 cut(s)	766, 1135
CviQI	GTAC	2 cut(s)	1098, 1122
DdeI	CTNAG	3 cut(s)	806, 909, 1147
DpnI	GATC	2 cut(s)	353, 1091
DpnII	GATC	2 cut(s)	351, 1089
DraI	TTTAAA	1 cut(s)	76
Eam1104I	CTCTTC	5 cut(s)	327, 498, 619, 1011, 1159
EarI	CTCTTC	5 cut(s)	327, 498, 619, 1011, 1159
Eco130I	CCWWGG	2 cut(s)	279, 1134
Eco31I	GGTCTC	1 cut(s)	905
Eco57I	CTGAAG	2 cut(s)	147, 1035
Eco88I	CYCGRG	1 cut(s)	1069
Eco91I	GGTNACC	1 cut(s)	1059
EcoO65I	GGTNACC	1 cut(s)	1059
EcoRI	GAATTC	2 cut(s)	361, 943
EcoT14I	CCWWGG	2 cut(s)	279, 1134
ErhI	CCWWGG	2 cut(s)	279, 1134
FaeI	CATG	2 cut(s)	769, 1138
FaiI	YATR	5 cut(s)	158, 380, 767, 875, 1136
FalI	AAGNNNNNCTT	2 cut(s)	476, 508
FaqI	GGGAC	1 cut(s)	1059
FatI	CATG	2 cut(s)	765, 1134
FauI	CCCGC	1 cut(s)	1084
Fnu4HI	GCNGC	4 cut(s)	611, 740, 743, 746
FokI	GGATG	2 cut(s)	384, 452
Fsp4HI	GCNGC	4 cut(s)	611, 740, 743, 746
FspBI	CTAG	1 cut(s)	146
FspI	TGCGCA	1 cut(s)	844
GlaI	GCGC	3 cut(s)	38, 342, 844
GluI	GCNGC	4 cut(s)	611, 740, 743, 746
GsaI	CCCAGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	1135
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	4 cut(s)	850, 991, 1133, 1171
HapII	CCGG	4 cut(s)	812, 920, 972, 1125
HhaI	GCGC	3 cut(s)	39, 343, 845
Hin1II	CATG	2 cut(s)	769, 1138
Hin6I	GCGC	3 cut(s)	37, 341, 843
HinP1I	GCGC	3 cut(s)	37, 341, 843
HincII	GTYRAC	2 cut(s)	706, 717
HindII	GTYRAC	2 cut(s)	706, 717
HindIII	AAGCTT	1 cut(s)	729
HpaII	CCGG	4 cut(s)	812, 920, 972, 1125
HphI	GGTGA	5 cut(s)	230, 378, 601, 960, 1053
Hpy166II	GTNNAC	3 cut(s)	67, 706, 717
Hpy188I	TCNGA	3 cut(s)	514, 910, 1144
Hpy188III	TCNNGA	3 cut(s)	475, 543, 812
Hpy8I	GTNNAC	3 cut(s)	67, 706, 717
HpyAV	CCTTC	5 cut(s)	316, 577, 688, 751, 1161
HpyCH4III	ACNGT	3 cut(s)	64, 434, 1102
HpyCH4V	TGCA	4 cut(s)	769, 873, 932, 1161
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 104, 610, 745, 891, 1158
HpyF3I	CTNAG	3 cut(s)	806, 909, 1147
Hsp92II	CATG	2 cut(s)	769, 1138
HspAI	GCGC	3 cut(s)	37, 341, 843
Kpn2I	TCCGGA	1 cut(s)	811
KspI	CCGCGG	1 cut(s)	1080
Kzo9I	GATC	2 cut(s)	351, 1089
LguI	GCTCTTC	2 cut(s)	1011, 1159
LmnI	GCTCC	4 cut(s)	784, 814, 1001, 1107
Lsp1109I	GCAGC	4 cut(s)	622, 751, 754, 757
LweI	GCATC	2 cut(s)	307, 556
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	4 cut(s)	58, 218, 232, 1059
MalI	GATC	2 cut(s)	353, 1091
MboI	GATC	2 cut(s)	351, 1089
MlyI	GAGTC	7 cut(s)	515, 524, 914, 932, 1081, 1126, 1139
MmeI	TCCRAC	2 cut(s)	142, 746
MroI	TCCGGA	1 cut(s)	811
MseI	TTAA	4 cut(s)	75, 168, 963, 1023
MslI	CAYNNNNRTG	1 cut(s)	776
MspA1I	CMGCKG	1 cut(s)	1079
MspCI	CTTAAG	1 cut(s)	1022
MspI	CCGG	4 cut(s)	812, 920, 972, 1125
MspR9I	CCNGG	1 cut(s)	972
MvnI	CGCG	2 cut(s)	343, 1079
MwoI	GCNNNNNNNGC	6 cut(s)	43, 104, 610, 745, 891, 1158
NciI	CCSGG	1 cut(s)	972
NcoI	CCATGG	1 cut(s)	1134
NdeII	GATC	2 cut(s)	351, 1089
NlaIII	CATG	2 cut(s)	769, 1138
NlaIV	GGNNCC	1 cut(s)	816
NmeAIII	GCCGAG	1 cut(s)	876
NmuCI	GTSAC	4 cut(s)	58, 218, 232, 1059
NsbI	TGCGCA	1 cut(s)	844
NspI	RCATGY	1 cut(s)	769
NspV	TTCGAA	1 cut(s)	1212
OliI	CACNNNNGTG	1 cut(s)	776
PciSI	GCTCTTC	2 cut(s)	1011, 1159
PcsI	WCGNNNNNNNCGW	1 cut(s)	887
PfeI	GAWTC	4 cut(s)	182, 406, 539, 1139
PflFI	GACNNNGTC	1 cut(s)	859
PkrI	GCNGC	4 cut(s)	612, 741, 744, 747
PleI	GAGTC	7 cut(s)	514, 523, 913, 931, 1080, 1125, 1139
PpsI	GAGTC	7 cut(s)	514, 523, 913, 931, 1080, 1125, 1139
PspEI	GGTNACC	1 cut(s)	1059
PspFI	CCCAGC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	816
PstNI	CAGNNNCTG	1 cut(s)	62
PsyI	GACNNNGTC	1 cut(s)	859
RsaI	GTAC	2 cut(s)	1099, 1123
RsaNI	GTAC	2 cut(s)	1098, 1122
RseI	CAYNNNNRTG	1 cut(s)	776
SacII	CCGCGG	1 cut(s)	1080
SapI	GCTCTTC	2 cut(s)	1011, 1159
SaqAI	TTAA	4 cut(s)	75, 168, 963, 1023
SatI	GCNGC	4 cut(s)	611, 740, 743, 746
Sau3AI	GATC	2 cut(s)	351, 1089
SchI	GAGTC	7 cut(s)	515, 524, 914, 932, 1081, 1126, 1139
ScrFI	CCNGG	1 cut(s)	972
SfaNI	GCATC	2 cut(s)	307, 556
Sfr303I	CCGCGG	1 cut(s)	1080
SfuI	TTCGAA	1 cut(s)	1212
SgrBI	CCGCGG	1 cut(s)	1080
SmiMI	CAYNNNNRTG	1 cut(s)	776
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
SsiI	CCGC	2 cut(s)	1077, 1079
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	970
StyI	CCWWGG	2 cut(s)	279, 1134
TaaI	ACNGT	3 cut(s)	64, 434, 1102
TaqI	TCGA	9 cut(s)	252, 412, 474, 533, 544, 665, 890, 1212, 1238
TfiI	GAWTC	4 cut(s)	182, 406, 539, 1139
Tru1I	TTAA	4 cut(s)	75, 168, 963, 1023
Tru9I	TTAA	4 cut(s)	75, 168, 963, 1023
TscAI	CASTG	2 cut(s)	67, 439
TseFI	GTSAC	4 cut(s)	58, 218, 232, 1059
TseI	GCWGC	4 cut(s)	610, 739, 742, 745
Tsp45I	GTSAC	4 cut(s)	58, 218, 232, 1059
TspDTI	ATGAA	4 cut(s)	279, 345, 456, 1219
TspGWI	ACGGA	3 cut(s)	723, 788, 1215
TspRI	CASTG	2 cut(s)	67, 439
Tth111I	GACNNNGTC	1 cut(s)	859
Vha464I	CTTAAG	1 cut(s)	1022
XapI	RAATTY	4 cut(s)	152, 309, 361, 943
XceI	RCATGY	1 cut(s)	769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.