Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010576

Physical Location & Seq

Genomic Coordinates Reverse (-)

1258971 .. 1260690

Gene Structure 1720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG019800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGCAAATTTGTGATTGTATCTATATGTCTGTTCATAAACCCAGAGAGGTTACTGAAGAACAAACCAAGAATGATGTTAAAAGGAAAGTGACATTTGATTTGGAGGAAGAAGGCATTGATGAGAAACAGAATGAAAATAAAGAGGAAACACCAAAAGAGATTGAACCAATTTTGGGTTCTATTGGATCAAGTGTAGTTACTGTGGTACCATCTCCTCCATTGAATCATAGGTACGAGAATTGCTCAAACAGTGAGGATGAAGATGCAGGTGTAATAGATTTATCAGGAAGTGATTTGAATGGAGATGATTATGGTGGGAGTGTTGATGATGAGGTTGAGAGCAATAAACAAAGTGTGATTCAAGAACAAGAGTCTTCAGAGTCTTTGTTTTCGATATCAATTGATTCGAGGAAGCGAGTTAGTGATGCTGAAGAAGATGAGAAGGAGGTGAATAGTCCAATGCCAAAGCCAATTGAATCAGACCAAAGTGGTAGAGATAATAGTAATAGGAGTCAGCATTGCCATTCAGTGTTGAGCCCTATAGAGAATCTTAGTCAATGGAAGGAGGTGAAAGCGAAAGCAATTCCTTTAGCTTCGAATCACCGAGAGAAGGAGAATATGAATGCTGAGCAAGATTTCAACATACCAATTAGTCCAGAGCCTACACTGAAGCTGTCAAAACACTTCAGAAGAAGACCACTTGAGTCCAATGACCTAAAGCTTGTAGACCAAGAAAATGGGGTTGACACTAGCCTTTCGAGCTGGTTGGTTGAATGCGAAACCACACCCAAGTCGAATGCTAGTGACAATTCTGTGGGGAACTTGATGTGTGAGGGAGTGAGTTCATCAAGAAGTCTTGGAGATAGACCAATTTTAGGAGCATGGACTAGTGAAGAGCTTAAGCAGTTATCTAATTCTTCTACTCTAAACCAGTCGCGAAGCCCGAGTCCTGATCAAATACCGATCATAGGGACTGTAGGGAGCTACTGGAGTCATACTGGTCAGGCCACGGATTCAGACTCAAACTCTTCCAGCAGAGGAATGGAAAACAAAGCAGGGAGGAACAGAGAGGATGAGAAAGTGAAATGGAAGACTACACCATTCGAGGCAAAATTGGAGAGAGTTTTAGATATGGGCATACTTGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

383

Amino Acids

42.5

Weight (kDa)

4.68

Isoelectric Point (pI)

64.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01750
malus_domestica	MD04G1231100.v1.1 MD12G1249400.v1.1
prunus_persica	Prupe.6G350800_v2.0.a1 Prupe.6G350800_v2.0.a1
pyrus_communis	pycom04g20470 pycom12g22920
rosa_chinensis	RchiOBHm_Chr3g0449491
rosa_laevigata	RLG00000025822 RLG00000025825
rosa_multiflora	Rmu_sc0000430.1_g000018 Rmu_sc0019012.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427450
rosa_rugosa	Rorug02G0621600 Rorug02G0621700
rosa_samantha	Rh3AG019800 Rh3BG019800 Rh3CG018500 Rh3DG019800
rosa_wichuraiana	Rw3G001540 Rw3G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	257
Acc36I	ACCTGC	1 cut(s)	257
Acc65I	GGTACC	1 cut(s)	205
AccB1I	GGYRCC	1 cut(s)	205
AccI	GTMKAC	1 cut(s)	726
AccII	CGCG	1 cut(s)	937
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	6
AcuI	CTGAAG	5 cut(s)	75, 360, 450, 670, 689
AfaI	GTAC	2 cut(s)	207, 233
AfiI	CCNNNNNNNGG	4 cut(s)	173, 610, 875, 968
AflII	CTTAAG	1 cut(s)	899
AgsI	TTSAA	7 cut(s)	164, 223, 298, 362, 476, 640, 773
AhlI	ACTAGT	1 cut(s)	887
AjuI	GAANNNNNNNTTGG	2 cut(s)	160, 192
AluBI	AGCT	7 cut(s)	593, 673, 721, 762, 898, 984, 1148
AluI	AGCT	7 cut(s)	593, 673, 721, 762, 898, 984, 1148
AlwI	GGATC	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	943
AoxI	GGCC	1 cut(s)	1005
ApeKI	GCWGC	1 cut(s)	1145
ApoI	RAATTY	1 cut(s)	6
ArsI	GACNNNNNNTTYG	4 cut(s)	82, 114, 931, 963
Asp718I	GGTACC	1 cut(s)	205
AsuHPI	GGTGA	3 cut(s)	460, 580, 593
AsuII	TTCGAA	1 cut(s)	596
AvaI	CYCGRG	1 cut(s)	943
BaeI	ACNNNNGTAYC	2 cut(s)	189, 222
BanI	GGYRCC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	539
BbsI	GAAGAC	3 cut(s)	366, 700, 1097
BccI	CCATC	1 cut(s)	217
BclI	TGATCA	1 cut(s)	952
BcuI	ACTAGT	1 cut(s)	887
BfaI	CTAG	3 cut(s)	750, 801, 888
BfmI	CTRYAG	2 cut(s)	540, 975
BfrI	CTTAAG	1 cut(s)	899
BfuAI	ACCTGC	1 cut(s)	257
BisI	GCNGC	1 cut(s)	1146
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	1 cut(s)	1147
BmeT110I	CYCGRG	1 cut(s)	943
BmiI	GGNNCC	1 cut(s)	207
BmsI	GCATC	2 cut(s)	253, 415
BpiI	GAAGAC	3 cut(s)	366, 700, 1097
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BpmI	CTGGAG	1 cut(s)	1009
Bpu1102I	GCTNAGC	1 cut(s)	627
Bpu14I	TTCGAA	1 cut(s)	596
BpuEI	CTTGAG	1 cut(s)	722
BsaJI	CCNNGG	1 cut(s)	1008
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 610, 875, 968
Bse1I	ACTGG	3 cut(s)	931, 992, 1003
Bse3DI	GCAATG	1 cut(s)	517
BseDI	CCNNGG	1 cut(s)	1008
BseGI	GGATG	2 cut(s)	262, 1078
BseLI	CCNNNNNNNGG	4 cut(s)	173, 610, 875, 968
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	1 cut(s)	618
BseNI	ACTGG	3 cut(s)	931, 992, 1003
BseRI	GAGGAG	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	937
BshFI	GGCC	1 cut(s)	1007
BshNI	GGYRCC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	943
BslFI	GGGAC	1 cut(s)	985
BslI	CCNNNNNNNGG	4 cut(s)	173, 610, 875, 968
BsmFI	GGGAC	1 cut(s)	985
BsmI	GAATGC	3 cut(s)	628, 779, 802
BsnI	GGCC	1 cut(s)	1007
BsoBI	CYCGRG	1 cut(s)	943
Bsp119I	TTCGAA	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	3 cut(s)	185, 952, 963
Bsp1720I	GCTNAGC	1 cut(s)	627
Bsp68I	TCGCGA	1 cut(s)	937
BspANI	GGCC	1 cut(s)	1007
BspCNI	CTCAG	1 cut(s)	619
BspFNI	CGCG	1 cut(s)	937
BspLI	GGNNCC	1 cut(s)	207
BspMI	ACCTGC	1 cut(s)	257
BspPI	GGATC	1 cut(s)	193
BspQI	GCTCTTC	1 cut(s)	888
BspT104I	TTCGAA	1 cut(s)	596
BspT107I	GGYRCC	1 cut(s)	205
BspTI	CTTAAG	1 cut(s)	899
BsrDI	GCAATG	1 cut(s)	517
BsrI	ACTGG	3 cut(s)	931, 992, 1003
BssECI	CCNNGG	1 cut(s)	1008
BssMI	GATC	3 cut(s)	185, 952, 963
Bst4CI	ACNGT	3 cut(s)	202, 251, 976
Bst6I	CTCTTC	2 cut(s)	888, 1033
BstAFI	CTTAAG	1 cut(s)	899
BstBI	TTCGAA	1 cut(s)	596
BstDEI	CTNAG	3 cut(s)	551, 627, 1149
BstDSI	CCRYGG	1 cut(s)	1008
BstF5I	GGATG	2 cut(s)	262, 1078
BstFNI	CGCG	1 cut(s)	937
BstKTI	GATC	3 cut(s)	188, 955, 966
BstMBI	GATC	3 cut(s)	185, 952, 963
BstMWI	GCNNNNNNNGC	1 cut(s)	759
BstSFI	CTRYAG	2 cut(s)	540, 975
BstUI	CGCG	1 cut(s)	937
BstV2I	GAAGAC	3 cut(s)	366, 700, 1097
BstXI	CCANNNNNNTGG	1 cut(s)	737
BsuRI	GGCC	1 cut(s)	1007
BtgI	CCRYGG	1 cut(s)	1008
BtsCI	GGATG	2 cut(s)	262, 1078
BtsIMutI	CAGTG	3 cut(s)	256, 534, 665
BtuMI	TCGCGA	1 cut(s)	937
BveI	ACCTGC	1 cut(s)	257
Csp6I	GTAC	2 cut(s)	206, 232
CviAII	CATG	1 cut(s)	882
CviQI	GTAC	2 cut(s)	206, 232
DdeI	CTNAG	3 cut(s)	551, 627, 1149
DpnI	GATC	3 cut(s)	187, 954, 965
DpnII	GATC	3 cut(s)	185, 952, 963
Eam1104I	CTCTTC	2 cut(s)	888, 1033
EarI	CTCTTC	2 cut(s)	888, 1033
Eco24I	GRGCYC	1 cut(s)	539
Eco32I	GATATC	1 cut(s)	396
Eco57I	CTGAAG	5 cut(s)	75, 360, 450, 670, 689
Eco88I	CYCGRG	1 cut(s)	943
EcoRV	GATATC	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	539
FaeI	CATG	1 cut(s)	885
FaqI	GGGAC	1 cut(s)	985
FatI	CATG	1 cut(s)	881
FbaI	TGATCA	1 cut(s)	952
FblI	GTMKAC	1 cut(s)	726
Fnu4HI	GCNGC	1 cut(s)	1146
FokI	GGATG	2 cut(s)	269, 1085
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	1 cut(s)	1146
FspBI	CTAG	3 cut(s)	750, 801, 888
GluI	GCNGC	1 cut(s)	1146
GsuI	CTGGAG	1 cut(s)	1009
HaeIII	GGCC	1 cut(s)	1007
Hin1II	CATG	1 cut(s)	885
HincII	GTYRAC	1 cut(s)	745
HindII	GTYRAC	1 cut(s)	745
HindIII	AAGCTT	1 cut(s)	719
HphI	GGTGA	3 cut(s)	460, 580, 593
Hpy166II	GTNNAC	2 cut(s)	727, 745
Hpy188I	TCNGA	4 cut(s)	379, 481, 689, 1018
Hpy188III	TCNNGA	6 cut(s)	285, 362, 656, 849, 936, 950
Hpy8I	GTNNAC	2 cut(s)	727, 745
HpyAV	CCTTC	4 cut(s)	104, 436, 556, 604
HpyCH4III	ACNGT	3 cut(s)	202, 251, 976
HpyCH4V	TGCA	3 cut(s)	4, 266, 1145
HpyF10VI	GCNNNNNNNGC	1 cut(s)	759
HpyF3I	CTNAG	3 cut(s)	551, 627, 1149
Hsp92II	CATG	1 cut(s)	885
KpnI	GGTACC	1 cut(s)	209
Ksp22I	TGATCA	1 cut(s)	952
Kzo9I	GATC	3 cut(s)	185, 952, 963
LguI	GCTCTTC	1 cut(s)	888
LmnI	GCTCC	2 cut(s)	878, 981
LweI	GCATC	2 cut(s)	253, 415
MaeI	CTAG	3 cut(s)	750, 801, 888
MaeIII	GTNAC	4 cut(s)	49, 88, 196, 803
MalI	GATC	3 cut(s)	187, 954, 965
MboI	GATC	3 cut(s)	185, 952, 963
MfeI	CAATTG	2 cut(s)	399, 471
MhlI	GDGCHC	1 cut(s)	539
MlyI	GAGTC	7 cut(s)	380, 389, 520, 713, 955, 1000, 1013
MseI	TTAA	2 cut(s)	78, 900
MspCI	CTTAAG	1 cut(s)	899
MunI	CAATTG	2 cut(s)	399, 471
Mva1269I	GAATGC	3 cut(s)	628, 779, 802
MvnI	CGCG	1 cut(s)	937
MwoI	GCNNNNNNNGC	1 cut(s)	759
NdeII	GATC	3 cut(s)	185, 952, 963
NlaIII	CATG	1 cut(s)	885
NlaIV	GGNNCC	1 cut(s)	207
NmuCI	GTSAC	2 cut(s)	88, 803
NruI	TCGCGA	1 cut(s)	937
NspV	TTCGAA	1 cut(s)	596
PaqCI	CACCTGC	1 cut(s)	257
PciSI	GCTCTTC	1 cut(s)	888
PcsI	WCGNNNNNNNCGW	1 cut(s)	941
PctI	GAATGC	3 cut(s)	628, 779, 802
PfeI	GAWTC	7 cut(s)	223, 358, 404, 476, 547, 598, 1013
PkrI	GCNGC	1 cut(s)	1147
PleI	GAGTC	7 cut(s)	379, 388, 519, 712, 954, 999, 1013
PpsI	GAGTC	7 cut(s)	379, 388, 519, 712, 954, 999, 1013
PspN4I	GGNNCC	1 cut(s)	207
RruI	TCGCGA	1 cut(s)	937
RsaI	GTAC	2 cut(s)	207, 233
RsaNI	GTAC	2 cut(s)	206, 232
SapI	GCTCTTC	1 cut(s)	888
SaqAI	TTAA	2 cut(s)	78, 900
SatI	GCNGC	1 cut(s)	1146
Sau3AI	GATC	3 cut(s)	185, 952, 963
SchI	GAGTC	7 cut(s)	380, 389, 520, 713, 955, 1000, 1013
SduI	GDGCHC	1 cut(s)	539
SfaNI	GCATC	2 cut(s)	253, 415
SfcI	CTRYAG	2 cut(s)	540, 975
SfuI	TTCGAA	1 cut(s)	596
SmlI	CTYRAG	2 cut(s)	701, 899
SmoI	CTYRAG	2 cut(s)	701, 899
SpeI	ACTAGT	1 cut(s)	887
SspMI	CTAG	3 cut(s)	750, 801, 888
TaaI	ACNGT	3 cut(s)	202, 251, 976
TaqI	TCGA	6 cut(s)	392, 407, 596, 758, 794, 1104
TfiI	GAWTC	7 cut(s)	223, 358, 404, 476, 547, 598, 1013
Tru1I	TTAA	2 cut(s)	78, 900
Tru9I	TTAA	2 cut(s)	78, 900
TscAI	CASTG	3 cut(s)	256, 534, 672
TseFI	GTSAC	2 cut(s)	88, 803
TseI	GCWGC	1 cut(s)	1145
Tsp45I	GTSAC	2 cut(s)	88, 803
TspDTI	ATGAA	5 cut(s)	23, 147, 273, 635, 834
TspGWI	ACGGA	1 cut(s)	1025
TspRI	CASTG	3 cut(s)	256, 534, 672
Vha464I	CTTAAG	1 cut(s)	899
XapI	RAATTY	1 cut(s)	6
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1039
XmiI	GTMKAC	1 cut(s)	726
XspI	CTAG	3 cut(s)	750, 801, 888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.