RchiOBHm_Chr3g0449491

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0010576
Physical Location & Seq
Reverse (-)
1248966 .. 1250842
1877 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41685

Sequence Viewer

Length: 1278 bp
ATGGGTTGCTTTCCAGCTTGTTTCACTTCTTCTAATAGCCGAAAGCACCGAAAATCAGTGGCTGTAACTCCCTGTATACAAAACCAAGAACAAATCGTTGAAGCTACCGAAGAAGGAGCTATTCTATTTGAACCCACAAAGCTATATGACATTATCAAACCCATTACTCCCATTACAGAATCCAAAGAGGTTATTGAAGAACAAACCAAGAATGATGTTAAAAGGAAAGTGACATTTGATTTGGAGGAAGAAGTCATTGATGAGAAACAGAATGAAAATAAAGAGGAAACAGCAAAAGAGATTGAACCAATTTTGGGTTCTATTGGATCAAGTGTAGTTACTGTGGTACCATCTCCTCCATTGAATCATAGGTACGAGAATTGCTCAAACAGTGAGGATGAAGATGCAGGTGTAATAGATTTATCAGGAAGTGATTTCAATGGAGATGATTATGGTGGGAGTGTTGATGATGAGGTTGAGAGCAACAAACAAAGTGTGATTCAAGAACAAGAGTCTTCAGAATCTTTGTTTTCGATATCAATTGATTCGAGGAAGCGAGTTAGTGATGCTGAAGAAGATGAGAAGGAGGTGAATAGTCCAATGCCAAAGCCAAAGCCAATTGAATCAGACCAAAGTGGTAGAGATAATAGTATCAGGAGTCAGAATTGTCATTCAGTGTTGAGCCCAATTGAGAATCTTAGTCAATGGAAGGAGGTAAAAGCGAAAGCAATTCCTTTAGCTTCGAATCACCAAGAGAAGGAGAATATGAATGCTGAGCAAGATTTCAACATACCAATTAGTCCAGAGCCTACACTGAAGCTGTCAAAACACTTCAGAAGAAGACCACTTGAGTCCAATGACCTAAAGCTTGTTGACCAAGAAAATGGGGTTGACACTAGCCTTTCGAGCTGGTTGGTTTCGAATGCTAGTGAAAATTCTGTGGGGAACTTGATGTGTGAGGGAGTGAGTTCATCAAGAAGTCTTGGAGATGGACCAATTTTAGGAGCATGGACTAGTGAAGAGCTTAAGCAGCTGTCTAATTCTTCTACTCTAAACCAGTCGCGAAGCCCGAGTCCTGATCAAATACCGATCATAGGGACTGTAGGGAGCTACTGGAGTCACACTGGTCAGGCCACGGATTCAGACTCAAACTCTTCCAGCAGAGGAATGGAAAACAAAGCAGGGAGGAACAGAGAGGATGAGAAAGTAAAATGGAAGACTATACCGTTCGAGGCAAAATTGGAGAGAGTTATAGATATGGGCATACTTGGAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

425

Amino Acids

46.93

Weight (kDa)

4.67

Isoelectric Point (pI)

62.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 398
Acc36I ACCTGC 1 cut(s) 398
Acc65I GGTACC 1 cut(s) 346
AccB1I GGYRCC 1 cut(s) 346
AccI GTMKAC 1 cut(s) 76
AccII CGCG 1 cut(s) 1063
AclWI GGATC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 934
AcuI CTGAAG 4 cut(s) 501, 591, 817, 836
AfaI GTAC 2 cut(s) 348, 374
AfiI CCNNNNNNNGG 4 cut(s) 314, 757, 1001, 1094
AflII CTTAAG 1 cut(s) 1025
AgsI TTSAA 9 cut(s) 101, 131, 197, 305, 364, 439, 503, 623, 787
AhlI ACTAGT 1 cut(s) 1013
AjuI GAANNNNNNNTTGG 2 cut(s) 301, 333
AlwI GGATC 1 cut(s) 334
AlwNI CAGNNNCTG 1 cut(s) 62
Ama87I CYCGRG 1 cut(s) 1069
AoxI GGCC 1 cut(s) 1131
ApeKI GCWGC 1 cut(s) 1030
ApoI RAATTY 1 cut(s) 934
ArsI GACNNNNNNTTYG 4 cut(s) 223, 255, 1057, 1089
Asp718I GGTACC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 992
AsuHPI GGTGA 2 cut(s) 601, 740
AsuII TTCGAA 2 cut(s) 743, 920
AvaI CYCGRG 1 cut(s) 1069
AvaII GGWCC 1 cut(s) 992
BaeI ACNNNNGTAYC 2 cut(s) 330, 363
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 1 cut(s) 686
BbsI GAAGAC 3 cut(s) 507, 847, 1223
BbvI GCAGC 1 cut(s) 1042
BccI CCATC 2 cut(s) 358, 983
BclI TGATCA 1 cut(s) 1078
BcuI ACTAGT 1 cut(s) 1013
BfaI CTAG 3 cut(s) 897, 927, 1014
BfmI CTRYAG 1 cut(s) 1101
BfrI CTTAAG 1 cut(s) 1025
BfuAI ACCTGC 1 cut(s) 398
BisI GCNGC 1 cut(s) 1031
BlpI GCTNAGC 1 cut(s) 774
BlsI GCNGC 1 cut(s) 1032
Bme18I GGWCC 1 cut(s) 992
BmeT110I CYCGRG 1 cut(s) 1069
BmgT120I GGNCC 1 cut(s) 992
BmiI GGNNCC 1 cut(s) 348
BmsI GCATC 2 cut(s) 394, 556
BpiI GAAGAC 3 cut(s) 507, 847, 1223
BplI GAGNNNNNCTC 2 cut(s) 368, 400
BpmI CTGGAG 1 cut(s) 1135
Bpu1102I GCTNAGC 1 cut(s) 774
Bpu14I TTCGAA 2 cut(s) 743, 920
BpuEI CTTGAG 1 cut(s) 869
BsaJI CCNNGG 1 cut(s) 1134
Bsc4I CCNNNNNNNGG 4 cut(s) 314, 757, 1001, 1094
Bse1I ACTGG 3 cut(s) 1057, 1118, 1129
BseDI CCNNGG 1 cut(s) 1134
BseGI GGATG 2 cut(s) 403, 1204
BseLI CCNNNNNNNGG 4 cut(s) 314, 757, 1001, 1094
BseMII CTCAG 1 cut(s) 765
BseNI ACTGG 3 cut(s) 1057, 1118, 1129
BseRI GAGGAG 1 cut(s) 345
BseXI GCAGC 1 cut(s) 1042
Bsh1236I CGCG 1 cut(s) 1063
BshFI GGCC 1 cut(s) 1133
BshNI GGYRCC 1 cut(s) 346
BsiHKCI CYCGRG 1 cut(s) 1069
BslFI GGGAC 1 cut(s) 1111
BslI CCNNNNNNNGG 4 cut(s) 314, 757, 1001, 1094
BsmFI GGGAC 1 cut(s) 1111
BsmI GAATGC 2 cut(s) 775, 928
BsnI GGCC 1 cut(s) 1133
BsoBI CYCGRG 1 cut(s) 1069
Bsp119I TTCGAA 2 cut(s) 743, 920
Bsp1286I GDGCHC 1 cut(s) 686
Bsp143I GATC 3 cut(s) 326, 1078, 1089
Bsp1720I GCTNAGC 1 cut(s) 774
Bsp68I TCGCGA 1 cut(s) 1063
BspANI GGCC 1 cut(s) 1133
BspCNI CTCAG 1 cut(s) 766
BspFNI CGCG 1 cut(s) 1063
BspLI GGNNCC 1 cut(s) 348
BspMI ACCTGC 1 cut(s) 398
BspPI GGATC 1 cut(s) 334
BspQI GCTCTTC 1 cut(s) 1014
BspT104I TTCGAA 2 cut(s) 743, 920
BspT107I GGYRCC 1 cut(s) 346
BspTI CTTAAG 1 cut(s) 1025
BsrI ACTGG 3 cut(s) 1057, 1118, 1129
BssECI CCNNGG 1 cut(s) 1134
BssMI GATC 3 cut(s) 326, 1078, 1089
BssNAI GTATAC 1 cut(s) 77
Bst1107I GTATAC 1 cut(s) 77
Bst4CI ACNGT 4 cut(s) 343, 392, 1102, 1227
Bst6I CTCTTC 2 cut(s) 1014, 1159
BstAFI CTTAAG 1 cut(s) 1025
BstBI TTCGAA 2 cut(s) 743, 920
BstDEI CTNAG 3 cut(s) 698, 774, 1275
BstDSI CCRYGG 1 cut(s) 1134
BstF5I GGATG 2 cut(s) 403, 1204
BstFNI CGCG 1 cut(s) 1063
BstKTI GATC 3 cut(s) 329, 1081, 1092
BstMBI GATC 3 cut(s) 326, 1078, 1089
BstMWI GCNNNNNNNGC 2 cut(s) 906, 1030
BstSFI CTRYAG 1 cut(s) 1101
BstUI CGCG 1 cut(s) 1063
BstV1I GCAGC 1 cut(s) 1042
BstV2I GAAGAC 3 cut(s) 507, 847, 1223
BstXI CCANNNNNNTGG 1 cut(s) 884
BstZ17I GTATAC 1 cut(s) 77
BsuRI GGCC 1 cut(s) 1133
BtgI CCRYGG 1 cut(s) 1134
BtsCI GGATG 2 cut(s) 403, 1204
BtsIMutI CAGTG 5 cut(s) 63, 397, 681, 812, 1122
BtuMI TCGCGA 1 cut(s) 1063
BveI ACCTGC 1 cut(s) 398
CaiI CAGNNNCTG 1 cut(s) 62
Cfr13I GGNCC 1 cut(s) 992
Csp6I GTAC 2 cut(s) 347, 373
CviAII CATG 1 cut(s) 1008
CviQI GTAC 2 cut(s) 347, 373
DdeI CTNAG 3 cut(s) 698, 774, 1275
DpnI GATC 3 cut(s) 328, 1080, 1091
DpnII GATC 3 cut(s) 326, 1078, 1089
Eam1104I CTCTTC 2 cut(s) 1014, 1159
EarI CTCTTC 2 cut(s) 1014, 1159
Eco24I GRGCYC 1 cut(s) 686
Eco32I GATATC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 992
Eco57I CTGAAG 4 cut(s) 501, 591, 817, 836
Eco88I CYCGRG 1 cut(s) 1069
EcoRV GATATC 1 cut(s) 537
EcoT38I GRGCYC 1 cut(s) 686
FaeI CATG 1 cut(s) 1011
FaqI GGGAC 1 cut(s) 1111
FatI CATG 1 cut(s) 1007
FbaI TGATCA 1 cut(s) 1078
FblI GTMKAC 1 cut(s) 76
Fnu4HI GCNGC 1 cut(s) 1031
FokI GGATG 2 cut(s) 410, 1211
FriOI GRGCYC 1 cut(s) 686
Fsp4HI GCNGC 1 cut(s) 1031
FspBI CTAG 3 cut(s) 897, 927, 1014
GluI GCNGC 1 cut(s) 1031
GsuI CTGGAG 1 cut(s) 1135
HaeIII GGCC 1 cut(s) 1133
Hin1II CATG 1 cut(s) 1011
HincII GTYRAC 2 cut(s) 874, 892
HindII GTYRAC 2 cut(s) 874, 892
HindIII AAGCTT 1 cut(s) 866
HphI GGTGA 2 cut(s) 601, 740
Hpy166II GTNNAC 3 cut(s) 77, 874, 892
Hpy188I TCNGA 5 cut(s) 520, 628, 663, 836, 1144
Hpy188III TCNNGA 7 cut(s) 426, 503, 655, 803, 975, 1062, 1076
Hpy8I GTNNAC 3 cut(s) 77, 874, 892
HpyAV CCTTC 4 cut(s) 107, 577, 703, 751
HpyCH4III ACNGT 4 cut(s) 343, 392, 1102, 1227
HpyCH4V TGCA 1 cut(s) 407
HpyF10VI GCNNNNNNNGC 2 cut(s) 906, 1030
HpyF3I CTNAG 3 cut(s) 698, 774, 1275
Hsp92II CATG 1 cut(s) 1011
KpnI GGTACC 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 1078
Kzo9I GATC 3 cut(s) 326, 1078, 1089
LguI GCTCTTC 1 cut(s) 1014
LmnI GCTCC 4 cut(s) 116, 1004, 1107, 1271
Lsp1109I GCAGC 1 cut(s) 1042
LweI GCATC 2 cut(s) 394, 556
MaeI CTAG 3 cut(s) 897, 927, 1014
MaeIII GTNAC 4 cut(s) 64, 229, 337, 1118
MalI GATC 3 cut(s) 328, 1080, 1091
MboI GATC 3 cut(s) 326, 1078, 1089
MfeI CAATTG 3 cut(s) 540, 618, 687
MhlI GDGCHC 1 cut(s) 686
MlyI GAGTC 6 cut(s) 521, 667, 860, 1081, 1126, 1139
MseI TTAA 2 cut(s) 219, 1026
MspA1I CMGCKG 1 cut(s) 1033
MspCI CTTAAG 1 cut(s) 1025
MunI CAATTG 3 cut(s) 540, 618, 687
Mva1269I GAATGC 2 cut(s) 775, 928
MvnI CGCG 1 cut(s) 1063
MwoI GCNNNNNNNGC 2 cut(s) 906, 1030
NdeII GATC 3 cut(s) 326, 1078, 1089
NlaIII CATG 1 cut(s) 1011
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 2 cut(s) 229, 1118
NruI TCGCGA 1 cut(s) 1063
NspV TTCGAA 2 cut(s) 743, 920
PaqCI CACCTGC 1 cut(s) 398
PciSI GCTCTTC 1 cut(s) 1014
PcsI WCGNNNNNNNCGW 1 cut(s) 1067
PctI GAATGC 2 cut(s) 775, 928
PfeI GAWTC 9 cut(s) 179, 364, 499, 521, 545, 623, 694, 745, 1139
PkrI GCNGC 1 cut(s) 1032
PleI GAGTC 6 cut(s) 520, 666, 859, 1080, 1125, 1139
PpsI GAGTC 6 cut(s) 520, 666, 859, 1080, 1125, 1139
PspN4I GGNNCC 1 cut(s) 348
PspPI GGNCC 1 cut(s) 992
PstNI CAGNNNCTG 1 cut(s) 62
PvuII CAGCTG 1 cut(s) 1033
RruI TCGCGA 1 cut(s) 1063
RsaI GTAC 2 cut(s) 348, 374
RsaNI GTAC 2 cut(s) 347, 373
SapI GCTCTTC 1 cut(s) 1014
SaqAI TTAA 2 cut(s) 219, 1026
SatI GCNGC 1 cut(s) 1031
Sau3AI GATC 3 cut(s) 326, 1078, 1089
Sau96I GGNCC 1 cut(s) 992
SchI GAGTC 6 cut(s) 521, 667, 860, 1081, 1126, 1139
SduI GDGCHC 1 cut(s) 686
SfaNI GCATC 2 cut(s) 394, 556
SfcI CTRYAG 1 cut(s) 1101
SfuI TTCGAA 2 cut(s) 743, 920
SinI GGWCC 1 cut(s) 992
SmlI CTYRAG 2 cut(s) 848, 1025
SmoI CTYRAG 2 cut(s) 848, 1025
SpeI ACTAGT 1 cut(s) 1013
SspMI CTAG 3 cut(s) 897, 927, 1014
TaaI ACNGT 4 cut(s) 343, 392, 1102, 1227
TaqI TCGA 6 cut(s) 533, 548, 743, 905, 920, 1230
TfiI GAWTC 9 cut(s) 179, 364, 499, 521, 545, 623, 694, 745, 1139
Tru1I TTAA 2 cut(s) 219, 1026
Tru9I TTAA 2 cut(s) 219, 1026
TscAI CASTG 5 cut(s) 63, 397, 681, 819, 1129
TseFI GTSAC 2 cut(s) 229, 1118
TseI GCWGC 1 cut(s) 1030
Tsp45I GTSAC 2 cut(s) 229, 1118
TspDTI ATGAA 4 cut(s) 288, 414, 782, 960
TspGWI ACGGA 1 cut(s) 1151
TspRI CASTG 5 cut(s) 63, 397, 681, 819, 1129
Vha464I CTTAAG 1 cut(s) 1025
VpaK11BI GGWCC 1 cut(s) 992
XapI RAATTY 1 cut(s) 934
XcmI CCANNNNNNNNNTGG 1 cut(s) 1165
XmiI GTMKAC 1 cut(s) 76
XspI CTAG 3 cut(s) 897, 927, 1014
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.