Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010576

Physical Location & Seq

Genomic Coordinates Forward (+)

31081422 .. 31083109

Gene Structure 1688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1231100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGGGTGCTTTCCAAAGTGCTTCTCTACCTGTATACGCCGAAAGCTCAAAAGTTCAGTCACTGTAACTCCCTTTAAGCACCATAGCATTGAAGTTGCTGAAGAAGCTCTTCAAATCCAACCTGCTGAAGCTGAACCCACAAAGCTAGAAGAACTTATAAAAGCCATTAAACACAGCAAAGAATCAGAAGAGAAGAGTGAAGAACAATCAAAGAATGGTGATACAAAGAAAGTCGCATTTGATTTGAATGCCGAGGCAAATGATGGAGAAACCTCCACCAAGGAAGAACTCTCCAATGTACTGGTGGAAATCTGTGATGAGAAGGAGAATGAAGAGGAAACAAGAAAAGGGATTGAACCGAATTTGATTGTACCGTTGGATCACCGTTATGAAAAGTGCAAAAATAGTGAGGATGAAGATGATTGTGCTAATGCTGATGAATTTGAGAGTAGTAAGCAAATCTTTGTTGAAGAAGAGTCTTCTGAGTCCTTGTTTTCGCTATCGATTGATTCTCGAAAACAAGAAGTTTGTGATGATTCTGGAACAGAAGAGAAGGAGGTGAACAGTCCAATGCCAAAGCAGCAAAATGGAAGAAGAGATTGCAGAAGGCAGAGTTTTCAGGCAGTGTTGACCCCCGTTGAAAATCTTGGTCAATGGAAGAAGGAGGTCAAAGAAAAGTCAACTCCAGCAGAAGCTCCAAAGCAGCAGCACAAAGAGAAGGAGAACATAAACATGGAGGTGGAGGAGGAGCAAGATTTGAAATTACCCTTTAGTCCGGAGCCTGCTTTGAAGCAGTCGAAACTCTTCGCAAGGCCGAGGACAAAGTCATCTTCTTGCATCGACACAAGCCTCTCGAGCTGGCTGGTTGAGTCTGAGACCACACCAATGTCAAATGCTAGTAGCAATAATTCCGTGGGGAACAAGTTTAATGCACCCGGAAGCGGTGAAGATAGGCCAATCCTGGGAGCTTGGACAGCTGAGGAGCTTAAGCAGCAGTCAGCTTCTTCTACTCCGAAAAGGTCACGAAGCCCGATTCCGGAGGAAATGCCGATCATAGGAACCGTTGGGAGCTACTGGAATCGGACCGGGCAGGCTCTTCTTGCAGAGGAATGGCCAAACCAATATGGGAAAACAGACAGGATCAGAAAGTGTCACGGAAGTCCACTCCATTTGAGGCAAACTTGGGAAGATCTGGACATGAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

403

Amino Acids

45.43

Weight (kDa)

5.03

Isoelectric Point (pI)

70.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01750
malus_domestica	MD04G1231100.v1.1 MD12G1249400.v1.1
prunus_persica	Prupe.6G350800_v2.0.a1 Prupe.6G350800_v2.0.a1
pyrus_communis	pycom04g20470 pycom12g22920
rosa_chinensis	RchiOBHm_Chr3g0449491
rosa_laevigata	RLG00000025822 RLG00000025825
rosa_multiflora	Rmu_sc0000430.1_g000018 Rmu_sc0019012.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427450
rosa_rugosa	Rorug02G0621600 Rorug02G0621700
rosa_samantha	Rh3AG019800 Rh3BG019800 Rh3CG018500 Rh3DG019800
rosa_wichuraiana	Rw3G001540 Rw3G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	158
Acc36I	ACCTGC	1 cut(s)	130
AccI	GTMKAC	1 cut(s)	34
AccIII	TCCGGA	2 cut(s)	775, 1036
AciI	CCGC	1 cut(s)	942
AclWI	GGATC	2 cut(s)	387, 1148
AcoI	YGGCCR	1 cut(s)	1112
AcsI	RAATTY	2 cut(s)	361, 440
AcuI	CTGAAG	2 cut(s)	120, 147
AfaI	GTAC	2 cut(s)	300, 372
AfiI	CCNNNNNNNGG	4 cut(s)	941, 962, 1036, 1055
AflII	CTTAAG	1 cut(s)	986
AgsI	TTSAA	8 cut(s)	92, 113, 247, 356, 470, 641, 760, 790
AjnI	CCWGG	1 cut(s)	960
Alw26I	GTCTC	1 cut(s)	869
AlwI	GGATC	2 cut(s)	387, 1148
AlwNI	CAGNNNCTG	1 cut(s)	62
Ama87I	CYCGRG	1 cut(s)	853
Aor13HI	TCCGGA	2 cut(s)	775, 1036
AoxI	GGCC	3 cut(s)	812, 953, 1112
ApeKI	GCWGC	4 cut(s)	580, 703, 706, 991
ApoI	RAATTY	2 cut(s)	361, 440
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
Asp700I	GAANNNNTTC	2 cut(s)	108, 803
AspS9I	GGNCC	1 cut(s)	1083
AsuC2I	CCSGG	2 cut(s)	936, 1087
AsuHPI	GGTGA	4 cut(s)	230, 374, 571, 956
AvaI	CYCGRG	1 cut(s)	853
AvaII	GGWCC	1 cut(s)	1083
BalI	TGGCCA	1 cut(s)	1114
BbsI	GAAGAC	1 cut(s)	471
BbvCI	CCTCAGC	1 cut(s)	978
BbvI	GCAGC	4 cut(s)	592, 715, 718, 1003
BccI	CCATC	1 cut(s)	257
BciT130I	CCWGG	1 cut(s)	962
BcnI	CCSGG	2 cut(s)	936, 1087
BcoDI	GTCTC	1 cut(s)	869
BfaI	CTAG	2 cut(s)	146, 897
BfrI	CTTAAG	1 cut(s)	986
BfuAI	ACCTGC	1 cut(s)	130
BglII	AGATCT	1 cut(s)	1189
BisI	GCNGC	4 cut(s)	581, 704, 707, 992
BlsI	GCNGC	4 cut(s)	582, 705, 708, 993
Bme1390I	CCNGG	3 cut(s)	936, 962, 1087
Bme18I	GGWCC	1 cut(s)	1083
BmeT110I	CYCGRG	1 cut(s)	853
BmgT120I	GGNCC	1 cut(s)	1083
BmiI	GGNNCC	2 cut(s)	780, 1060
BmrFI	CCNGG	3 cut(s)	936, 962, 1087
BmsI	GCATC	1 cut(s)	846
BpiI	GAAGAC	1 cut(s)	471
BpmI	CTGGAG	1 cut(s)	669
Bpu10I	CCTNAGC	1 cut(s)	978
BpuMI	CCSGG	2 cut(s)	936, 1087
Bsa29I	ATCGAT	1 cut(s)	503
BsaI	GGTCTC	1 cut(s)	869
BsaJI	CCNNGG	5 cut(s)	252, 279, 815, 912, 961
BsaWI	WCCGGW	2 cut(s)	775, 1036
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bsc4I	CCNNNNNNNGG	4 cut(s)	941, 962, 1036, 1055
Bse1I	ACTGG	2 cut(s)	306, 1079
BseAI	TCCGGA	2 cut(s)	775, 1036
BseBI	CCWGG	1 cut(s)	962
BseCI	ATCGAT	1 cut(s)	503
BseDI	CCNNGG	5 cut(s)	252, 279, 815, 912, 961
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	4 cut(s)	941, 962, 1036, 1055
BseMII	CTCAG	3 cut(s)	474, 864, 969
BseNI	ACTGG	2 cut(s)	306, 1079
BseRI	GAGGAG	3 cut(s)	758, 761, 995
BseXI	GCAGC	4 cut(s)	592, 715, 718, 1003
BshFI	GGCC	3 cut(s)	814, 955, 1114
BshVI	ATCGAT	1 cut(s)	503
BsiHKCI	CYCGRG	1 cut(s)	853
BsiSI	CCGG	4 cut(s)	776, 936, 1037, 1086
BslI	CCNNNNNNNGG	4 cut(s)	941, 962, 1036, 1055
BsmAI	GTCTC	1 cut(s)	869
BsmI	GAATGC	1 cut(s)	253
BsnI	GGCC	3 cut(s)	814, 955, 1114
Bso31I	GGTCTC	1 cut(s)	869
BsoBI	CYCGRG	1 cut(s)	853
Bsp13I	TCCGGA	2 cut(s)	775, 1036
Bsp143I	GATC	4 cut(s)	379, 1050, 1140, 1189
BspACI	CCGC	1 cut(s)	942
BspANI	GGCC	3 cut(s)	814, 955, 1114
BspCNI	CTCAG	3 cut(s)	475, 865, 970
BspDI	ATCGAT	1 cut(s)	503
BspEI	TCCGGA	2 cut(s)	775, 1036
BspLI	GGNNCC	2 cut(s)	780, 1060
BspMI	ACCTGC	1 cut(s)	130
BspPI	GGATC	2 cut(s)	387, 1148
BspQI	GCTCTTC	2 cut(s)	114, 1101
BspTI	CTTAAG	1 cut(s)	986
BspTNI	GGTCTC	1 cut(s)	869
BsrI	ACTGG	2 cut(s)	306, 1079
BssECI	CCNNGG	5 cut(s)	252, 279, 815, 912, 961
BssMI	GATC	4 cut(s)	379, 1050, 1140, 1189
BssNAI	GTATAC	1 cut(s)	35
BssT1I	CCWWGG	1 cut(s)	279
Bst1107I	GTATAC	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	962
Bst4CI	ACNGT	5 cut(s)	64, 375, 386, 566, 1063
Bst6I	CTCTTC	9 cut(s)	114, 183, 188, 327, 468, 543, 589, 809, 1101
BstAFI	CTTAAG	1 cut(s)	986
BstC8I	GCNNGC	3 cut(s)	783, 860, 1092
BstDEI	CTNAG	3 cut(s)	483, 873, 978
BstDSI	CCRYGG	1 cut(s)	912
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	4 cut(s)	382, 1053, 1143, 1192
BstMAI	GTCTC	1 cut(s)	869
BstMBI	GATC	4 cut(s)	379, 1050, 1140, 1189
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 580, 855, 974, 991, 1100
BstNI	CCWGG	1 cut(s)	962
BstSCI	CCNGG	3 cut(s)	934, 960, 1085
BstV1I	GCAGC	4 cut(s)	592, 715, 718, 1003
BstV2I	GAAGAC	1 cut(s)	471
BstX2I	RGATCY	1 cut(s)	1189
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	1189
BstZ17I	GTATAC	1 cut(s)	35
Bsu15I	ATCGAT	1 cut(s)	503
BsuRI	GGCC	3 cut(s)	814, 955, 1114
BsuTUI	ATCGAT	1 cut(s)	503
BtgI	CCRYGG	1 cut(s)	912
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	2 cut(s)	60, 630
BveI	ACCTGC	1 cut(s)	130
Cac8I	GCNNGC	3 cut(s)	783, 860, 1092
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr13I	GGNCC	1 cut(s)	1083
ClaI	ATCGAT	1 cut(s)	503
CpoI	CGGWCCG	1 cut(s)	1083
Csp6I	GTAC	2 cut(s)	299, 371
CspCI	CAANNNNNGTGG	2 cut(s)	1152, 1187
CspI	CGGWCCG	1 cut(s)	1083
CviAII	CATG	2 cut(s)	733, 1198
CviQI	GTAC	2 cut(s)	299, 371
DdeI	CTNAG	3 cut(s)	483, 873, 978
DpnI	GATC	4 cut(s)	381, 1052, 1142, 1191
DpnII	GATC	4 cut(s)	379, 1050, 1140, 1189
EaeI	YGGCCR	1 cut(s)	1112
Eam1104I	CTCTTC	9 cut(s)	114, 183, 188, 327, 468, 543, 589, 809, 1101
EarI	CTCTTC	9 cut(s)	114, 183, 188, 327, 468, 543, 589, 809, 1101
Eco130I	CCWWGG	1 cut(s)	279
Eco31I	GGTCTC	1 cut(s)	869
Eco47I	GGWCC	1 cut(s)	1083
Eco57I	CTGAAG	2 cut(s)	120, 147
Eco88I	CYCGRG	1 cut(s)	853
EcoRII	CCWGG	1 cut(s)	960
EcoT14I	CCWWGG	1 cut(s)	279
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	2 cut(s)	736, 1201
FaiI	YATR	9 cut(s)	35, 84, 158, 390, 728, 734, 1055, 1125, 1199
FalI	AAGNNNNNCTT	4 cut(s)	93, 125, 446, 478
FatI	CATG	2 cut(s)	732, 1197
FblI	GTMKAC	1 cut(s)	34
Fnu4HI	GCNGC	4 cut(s)	581, 704, 707, 992
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	4 cut(s)	581, 704, 707, 992
FspBI	CTAG	2 cut(s)	146, 897
GluI	GCNGC	4 cut(s)	581, 704, 707, 992
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	3 cut(s)	814, 955, 1114
HapII	CCGG	4 cut(s)	776, 936, 1037, 1086
Hin1II	CATG	2 cut(s)	736, 1201
HincII	GTYRAC	2 cut(s)	630, 681
HindII	GTYRAC	2 cut(s)	630, 681
HinfI	GANTC	8 cut(s)	182, 476, 485, 509, 536, 869, 1033, 1078
HpaII	CCGG	4 cut(s)	776, 936, 1037, 1086
HphI	GGTGA	4 cut(s)	230, 374, 571, 956
Hpy166II	GTNNAC	5 cut(s)	35, 562, 630, 681, 1163
Hpy188I	TCNGA	6 cut(s)	187, 484, 874, 1014, 1083, 1145
Hpy188III	TCNNGA	7 cut(s)	513, 540, 776, 853, 1023, 1037, 1193
Hpy8I	GTNNAC	5 cut(s)	35, 562, 630, 681, 1163
HpyAV	CCTTC	5 cut(s)	316, 547, 600, 655, 712
HpyCH4III	ACNGT	5 cut(s)	64, 375, 386, 566, 1063
HpyCH4V	TGCA	5 cut(s)	399, 603, 837, 932, 1103
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 580, 855, 974, 991, 1100
HpyF3I	CTNAG	3 cut(s)	483, 873, 978
Hsp92II	CATG	2 cut(s)	736, 1201
Kpn2I	TCCGGA	2 cut(s)	775, 1036
Kzo9I	GATC	4 cut(s)	379, 1050, 1140, 1189
LguI	GCTCTTC	2 cut(s)	114, 1101
LmnI	GCTCC	6 cut(s)	700, 748, 778, 965, 982, 1068
Lsp1109I	GCAGC	4 cut(s)	592, 715, 718, 1003
LweI	GCATC	1 cut(s)	846
MaeI	CTAG	2 cut(s)	146, 897
MaeIII	GTNAC	4 cut(s)	58, 64, 1020, 1151
MalI	GATC	4 cut(s)	381, 1052, 1142, 1191
MboI	GATC	4 cut(s)	379, 1050, 1140, 1189
MflI	RGATCY	1 cut(s)	1189
MlsI	TGGCCA	1 cut(s)	1114
MluCI	AATT	4 cut(s)	361, 440, 761, 907
MluNI	TGGCCA	1 cut(s)	1114
MlyI	GAGTC	3 cut(s)	485, 494, 878
MmeI	TCCRAC	2 cut(s)	142, 357
Mox20I	TGGCCA	1 cut(s)	1114
MroI	TCCGGA	2 cut(s)	775, 1036
MroXI	GAANNNNTTC	2 cut(s)	108, 803
MscI	TGGCCA	1 cut(s)	1114
MseI	TTAA	4 cut(s)	75, 168, 927, 987
MslI	CAYNNNNRTG	4 cut(s)	387, 731, 737, 884
Msp20I	TGGCCA	1 cut(s)	1114
MspA1I	CMGCKG	1 cut(s)	977
MspCI	CTTAAG	1 cut(s)	986
MspI	CCGG	4 cut(s)	776, 936, 1037, 1086
MspR9I	CCNGG	3 cut(s)	936, 962, 1087
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	1 cut(s)	962
MwoI	GCNNNNNNNGC	6 cut(s)	104, 580, 855, 974, 991, 1100
NciI	CCSGG	2 cut(s)	936, 1087
NdeII	GATC	4 cut(s)	379, 1050, 1140, 1189
NlaIII	CATG	2 cut(s)	736, 1201
NlaIV	GGNNCC	2 cut(s)	780, 1060
NmeAIII	GCCGAG	2 cut(s)	277, 840
NmuCI	GTSAC	3 cut(s)	58, 1020, 1151
PaeR7I	CTCGAG	1 cut(s)	853
PciSI	GCTCTTC	2 cut(s)	114, 1101
PctI	GAATGC	1 cut(s)	253
PdmI	GAANNNNTTC	2 cut(s)	108, 803
PfeI	GAWTC	5 cut(s)	182, 509, 536, 1033, 1078
PflFI	GACNNNGTC	1 cut(s)	823
PkrI	GCNGC	4 cut(s)	582, 705, 708, 993
PleI	GAGTC	3 cut(s)	484, 493, 877
PpsI	GAGTC	3 cut(s)	484, 493, 877
PsiI	TTATAA	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	960
PspGI	CCWGG	1 cut(s)	960
PspN4I	GGNNCC	2 cut(s)	780, 1060
PspPI	GGNCC	1 cut(s)	1083
PstNI	CAGNNNCTG	1 cut(s)	62
PsuI	RGATCY	1 cut(s)	1189
PsyI	GACNNNGTC	1 cut(s)	823
PvuII	CAGCTG	1 cut(s)	977
RsaI	GTAC	2 cut(s)	300, 372
RsaNI	GTAC	2 cut(s)	299, 371
RseI	CAYNNNNRTG	4 cut(s)	387, 731, 737, 884
Rsr2I	CGGWCCG	1 cut(s)	1083
RsrII	CGGWCCG	1 cut(s)	1083
SapI	GCTCTTC	2 cut(s)	114, 1101
SaqAI	TTAA	4 cut(s)	75, 168, 927, 987
SatI	GCNGC	4 cut(s)	581, 704, 707, 992
Sau3AI	GATC	4 cut(s)	379, 1050, 1140, 1189
Sau96I	GGNCC	1 cut(s)	1083
SchI	GAGTC	3 cut(s)	485, 494, 878
ScrFI	CCNGG	3 cut(s)	936, 962, 1087
SfaNI	GCATC	1 cut(s)	846
Sfr274I	CTCGAG	1 cut(s)	853
SinI	GGWCC	1 cut(s)	1083
SlaI	CTCGAG	1 cut(s)	853
SmiMI	CAYNNNNRTG	4 cut(s)	387, 731, 737, 884
SmlI	CTYRAG	2 cut(s)	853, 986
SmoI	CTYRAG	2 cut(s)	853, 986
Sse9I	AATT	4 cut(s)	361, 440, 761, 907
SsiI	CCGC	1 cut(s)	942
SspMI	CTAG	2 cut(s)	146, 897
StyD4I	CCNGG	3 cut(s)	934, 960, 1085
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	5 cut(s)	64, 375, 386, 566, 1063
TaqI	TCGA	5 cut(s)	503, 514, 797, 840, 854
TasI	AATT	4 cut(s)	361, 440, 761, 907
TatI	WGTACW	1 cut(s)	298
TfiI	GAWTC	5 cut(s)	182, 509, 536, 1033, 1078
Tru1I	TTAA	4 cut(s)	75, 168, 927, 987
Tru9I	TTAA	4 cut(s)	75, 168, 927, 987
TscAI	CASTG	2 cut(s)	67, 630
TseFI	GTSAC	3 cut(s)	58, 1020, 1151
TseI	GCWGC	4 cut(s)	580, 703, 706, 991
Tsp45I	GTSAC	3 cut(s)	58, 1020, 1151
TspDTI	ATGAA	4 cut(s)	345, 405, 429, 453
TspGWI	ACGGA	2 cut(s)	901, 1170
TspRI	CASTG	2 cut(s)	67, 630
Tth111I	GACNNNGTC	1 cut(s)	823
Vha464I	CTTAAG	1 cut(s)	986
VpaK11BI	GGWCC	1 cut(s)	1083
XapI	RAATTY	2 cut(s)	361, 440
XcmI	CCANNNNNNNNNTGG	1 cut(s)	301
XhoI	CTCGAG	1 cut(s)	853
XmiI	GTMKAC	1 cut(s)	34
XmnI	GAANNNNTTC	2 cut(s)	108, 803
XspI	CTAG	2 cut(s)	146, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.