Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010576

Physical Location & Seq

Genomic Coordinates Forward (+)

48515717 .. 48517323

Gene Structure 1607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025822

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGGTTGCTTTCCAGCTTGTTTCACTTCTTCTAATAGCCGAAAGCACCAAAAATCAGTAGCTATAACTCCCTCTATACAAAACCAAGAACAAATCGTTGAGGCTACCGAAGAAGATGCTGTTCGATTTGAACCCACAAAGCTAGATGACATTATCAAACCCATTAATGCCATTACAGAATCCAAACCCAGACAGGTTATTGAAGAACAAACCAAGAATGATGTTAAAAGGAAAGTGACATTTGATTTGGAGGAAGAAGGCATTGCTGAGAAACAGGATGAAAATAAAGAGGAAACACCAAAAGAGATTGAACCAATTTTAGGTTCTATTGGATCAAGTGTAGTTACTGTGGTACCATCTTATCCATCAAATCATAGGTATGAAAATTGCTCAAACAGTGAGGATGAAGATGAAGGTGTAATAGATTTATCAGGAAGTGATTTGAATGGAGATGATTCTGGTGAGAGTGTTGATGATGAGGTTGAGAGCAATAAGCAAAGTGTGATTCAAGAACAAGAGTCTTCAGAATCTTTGTTTTCGATATCAATTGATTCGAGGACTAAGCAAAATGATGCTGAAGAAGATGAGAAGGAGGTGAATAGTCCAATGCCAAAGCCAAAGCCAATTGAATCAGACCAAAGTGGTAGAGATAATAGTAATGGGAGTCAGCATTGTCATTCAGTGTTGAGCCCTATAGAGAATCTTAGTCAATGGAAGGAGGTAAAAGCGAAAGCAATTCCTTTAGCTTCGAATCACCAAGAGAAGGAGAATATGAATGCTGAGCAAGATTTCAACATACCAATTAGTCCAGAGCCTACACTGAAGCTGTCAAAACAATTCAGAAGAAGACCACTTGAGTCCAATGACCCAAAGCTTGTTGACCAAGAAAATGGGGTTGACACTAGCCTTTCGAGCTGGTTGGTTGAATGTGAAACCACACCCAAGTCGAATGCTAGTGACAATTCTGTGGGGAACTTGATGTGTGAGGGAGTGAGTTCATCAAGAAGACTTGGAGATAGACCAATTTTAGGAGCATGGACTAGTGAAGAGCTTAAGCAGTTGTCTAATTCTTCTACTCTAAACCAGTCGCGAAGTCCGAGTCCTGATCAAATACCGATCATAGGGACTGTAGGGAGCTACTGGAGTCACACTGGTCAGGCCACGGATTCAGACTCAAACTCTTCCAGCAGAGGAATGGAAAACAAAGCAGGGAGGAACAGAGAGGATGAGAAAGTGAAATGGAAGACTATACCATTCGAGGCAAAATTGGAGAGAGTTTCAGATATGGGCATACTTGGAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

435

Amino Acids

48.0

Weight (kDa)

4.63

Isoelectric Point (pI)

62.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g01750
malus_domestica	MD04G1231100.v1.1 MD12G1249400.v1.1
prunus_persica	Prupe.6G350800_v2.0.a1 Prupe.6G350800_v2.0.a1
pyrus_communis	pycom04g20470 pycom12g22920
rosa_chinensis	RchiOBHm_Chr3g0449491
rosa_laevigata	RLG00000025822 RLG00000025825
rosa_multiflora	Rmu_sc0000430.1_g000018 Rmu_sc0019012.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427450
rosa_rugosa	Rorug02G0621600 Rorug02G0621700
rosa_samantha	Rh3AG019800 Rh3BG019800 Rh3CG018500 Rh3DG019800
rosa_wichuraiana	Rw3G001540 Rw3G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	352
AccII	CGCG	1 cut(s)	1090
AclWI	GGATC	1 cut(s)	340
AcuI	CTGAAG	3 cut(s)	507, 597, 842
AfaI	GTAC	1 cut(s)	354
AfiI	CCNNNNNNNGG	4 cut(s)	320, 763, 1028, 1121
AflII	CTTAAG	1 cut(s)	1052
AgsI	TTSAA	8 cut(s)	131, 203, 311, 445, 509, 629, 793, 926
AhlI	ACTAGT	1 cut(s)	1040
AjuI	GAANNNNNNNTTGG	2 cut(s)	307, 339
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	1158
ArsI	GACNNNNNNTTYG	4 cut(s)	229, 261, 1084, 1116
AseI	ATTAAT	1 cut(s)	165
Asp718I	GGTACC	1 cut(s)	352
AsuHPI	GGTGA	3 cut(s)	473, 607, 746
AsuII	TTCGAA	1 cut(s)	749
BaeI	ACNNNNGTAYC	2 cut(s)	336, 369
BanI	GGYRCC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	692
BbsI	GAAGAC	4 cut(s)	513, 853, 1012, 1250
BccI	CCATC	2 cut(s)	364, 373
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BclI	TGATCA	1 cut(s)	1105
BcuI	ACTAGT	1 cut(s)	1040
BfaI	CTAG	4 cut(s)	143, 903, 954, 1041
BfmI	CTRYAG	2 cut(s)	693, 1128
BfrI	CTTAAG	1 cut(s)	1052
BlpI	GCTNAGC	1 cut(s)	780
BmiI	GGNNCC	1 cut(s)	354
BmsI	GCATC	2 cut(s)	106, 562
BpiI	GAAGAC	4 cut(s)	513, 853, 1012, 1250
BpmI	CTGGAG	1 cut(s)	1162
Bpu1102I	GCTNAGC	1 cut(s)	780
Bpu14I	TTCGAA	1 cut(s)	749
BpuEI	CTTGAG	1 cut(s)	875
BsaJI	CCNNGG	1 cut(s)	1161
Bsc4I	CCNNNNNNNGG	4 cut(s)	320, 763, 1028, 1121
Bse1I	ACTGG	3 cut(s)	1084, 1145, 1156
Bse3DI	GCAATG	1 cut(s)	261
BseDI	CCNNGG	1 cut(s)	1161
BseGI	GGATG	3 cut(s)	283, 409, 1231
BseLI	CCNNNNNNNGG	4 cut(s)	320, 763, 1028, 1121
BseMI	GCAATG	1 cut(s)	261
BseMII	CTCAG	2 cut(s)	258, 771
BseNI	ACTGG	3 cut(s)	1084, 1145, 1156
Bsh1236I	CGCG	1 cut(s)	1090
BshFI	GGCC	1 cut(s)	1160
BshNI	GGYRCC	1 cut(s)	352
BslFI	GGGAC	1 cut(s)	1138
BslI	CCNNNNNNNGG	4 cut(s)	320, 763, 1028, 1121
BsmFI	GGGAC	1 cut(s)	1138
BsmI	GAATGC	2 cut(s)	781, 955
BsnI	GGCC	1 cut(s)	1160
Bsp119I	TTCGAA	1 cut(s)	749
Bsp1286I	GDGCHC	1 cut(s)	692
Bsp143I	GATC	3 cut(s)	332, 1105, 1116
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp68I	TCGCGA	1 cut(s)	1090
BspANI	GGCC	1 cut(s)	1160
BspCNI	CTCAG	2 cut(s)	259, 772
BspFNI	CGCG	1 cut(s)	1090
BspLI	GGNNCC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	340
BspQI	GCTCTTC	1 cut(s)	1041
BspT104I	TTCGAA	1 cut(s)	749
BspT107I	GGYRCC	1 cut(s)	352
BspTI	CTTAAG	1 cut(s)	1052
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	3 cut(s)	1084, 1145, 1156
BssECI	CCNNGG	1 cut(s)	1161
BssMI	GATC	3 cut(s)	332, 1105, 1116
Bst4CI	ACNGT	3 cut(s)	349, 398, 1129
Bst6I	CTCTTC	2 cut(s)	1041, 1186
BstAFI	CTTAAG	1 cut(s)	1052
BstBI	TTCGAA	1 cut(s)	749
BstDEI	CTNAG	5 cut(s)	267, 561, 704, 780, 1302
BstDSI	CCRYGG	1 cut(s)	1161
BstF5I	GGATG	3 cut(s)	283, 409, 1231
BstFNI	CGCG	1 cut(s)	1090
BstKTI	GATC	3 cut(s)	335, 1108, 1119
BstMBI	GATC	3 cut(s)	332, 1105, 1116
BstMWI	GCNNNNNNNGC	1 cut(s)	912
BstSFI	CTRYAG	2 cut(s)	693, 1128
BstUI	CGCG	1 cut(s)	1090
BstV2I	GAAGAC	4 cut(s)	513, 853, 1012, 1250
BstXI	CCANNNNNNTGG	1 cut(s)	890
BsuRI	GGCC	1 cut(s)	1160
BtgI	CCRYGG	1 cut(s)	1161
BtsCI	GGATG	3 cut(s)	283, 409, 1231
BtsIMutI	CAGTG	4 cut(s)	403, 687, 818, 1149
BtuMI	TCGCGA	1 cut(s)	1090
Csp6I	GTAC	1 cut(s)	353
CviAII	CATG	1 cut(s)	1035
CviQI	GTAC	1 cut(s)	353
DdeI	CTNAG	5 cut(s)	267, 561, 704, 780, 1302
DpnI	GATC	3 cut(s)	334, 1107, 1118
DpnII	GATC	3 cut(s)	332, 1105, 1116
Eam1104I	CTCTTC	2 cut(s)	1041, 1186
EarI	CTCTTC	2 cut(s)	1041, 1186
Eco24I	GRGCYC	1 cut(s)	692
Eco32I	GATATC	1 cut(s)	543
Eco57I	CTGAAG	3 cut(s)	507, 597, 842
EcoRV	GATATC	1 cut(s)	543
EcoT38I	GRGCYC	1 cut(s)	692
FaeI	CATG	1 cut(s)	1038
FaqI	GGGAC	1 cut(s)	1138
FatI	CATG	1 cut(s)	1034
FbaI	TGATCA	1 cut(s)	1105
FokI	GGATG	3 cut(s)	290, 416, 1238
FriOI	GRGCYC	1 cut(s)	692
FspBI	CTAG	4 cut(s)	143, 903, 954, 1041
GsuI	CTGGAG	1 cut(s)	1162
HaeIII	GGCC	1 cut(s)	1160
Hin1II	CATG	1 cut(s)	1038
HincII	GTYRAC	2 cut(s)	880, 898
HindII	GTYRAC	2 cut(s)	880, 898
HindIII	AAGCTT	1 cut(s)	872
HphI	GGTGA	3 cut(s)	473, 607, 746
Hpy166II	GTNNAC	2 cut(s)	880, 898
Hpy188I	TCNGA	6 cut(s)	526, 634, 842, 1098, 1171, 1282
Hpy188III	TCNNGA	6 cut(s)	432, 509, 809, 1002, 1089, 1103
Hpy8I	GTNNAC	2 cut(s)	880, 898
HpyAV	CCTTC	5 cut(s)	251, 407, 583, 709, 757
HpyCH4III	ACNGT	3 cut(s)	349, 398, 1129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	912
HpyF3I	CTNAG	5 cut(s)	267, 561, 704, 780, 1302
Hsp92II	CATG	1 cut(s)	1038
KpnI	GGTACC	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	1105
Kzo9I	GATC	3 cut(s)	332, 1105, 1116
LguI	GCTCTTC	1 cut(s)	1041
LmnI	GCTCC	3 cut(s)	1031, 1134, 1298
LweI	GCATC	2 cut(s)	106, 562
MaeI	CTAG	4 cut(s)	143, 903, 954, 1041
MaeIII	GTNAC	4 cut(s)	235, 343, 956, 1145
MalI	GATC	3 cut(s)	334, 1107, 1118
MboI	GATC	3 cut(s)	332, 1105, 1116
MfeI	CAATTG	2 cut(s)	546, 624
MhlI	GDGCHC	1 cut(s)	692
MlyI	GAGTC	6 cut(s)	527, 673, 866, 1108, 1153, 1166
MseI	TTAA	3 cut(s)	165, 225, 1053
MslI	CAYNNNNRTG	1 cut(s)	378
MspCI	CTTAAG	1 cut(s)	1052
MunI	CAATTG	2 cut(s)	546, 624
Mva1269I	GAATGC	2 cut(s)	781, 955
MvnI	CGCG	1 cut(s)	1090
MwoI	GCNNNNNNNGC	1 cut(s)	912
NdeII	GATC	3 cut(s)	332, 1105, 1116
NlaIII	CATG	1 cut(s)	1038
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	3 cut(s)	235, 956, 1145
NruI	TCGCGA	1 cut(s)	1090
NspV	TTCGAA	1 cut(s)	749
PciSI	GCTCTTC	1 cut(s)	1041
PcsI	WCGNNNNNNNCGW	1 cut(s)	1094
PctI	GAATGC	2 cut(s)	781, 955
PfeI	GAWTC	9 cut(s)	179, 455, 505, 527, 551, 629, 700, 751, 1166
PleI	GAGTC	6 cut(s)	526, 672, 865, 1107, 1152, 1166
PpsI	GAGTC	6 cut(s)	526, 672, 865, 1107, 1152, 1166
PshBI	ATTAAT	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	354
RruI	TCGCGA	1 cut(s)	1090
RsaI	GTAC	1 cut(s)	354
RsaNI	GTAC	1 cut(s)	353
RseI	CAYNNNNRTG	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	1041
SaqAI	TTAA	3 cut(s)	165, 225, 1053
Sau3AI	GATC	3 cut(s)	332, 1105, 1116
SchI	GAGTC	6 cut(s)	527, 673, 866, 1108, 1153, 1166
SduI	GDGCHC	1 cut(s)	692
SfaNI	GCATC	2 cut(s)	106, 562
SfcI	CTRYAG	2 cut(s)	693, 1128
SfuI	TTCGAA	1 cut(s)	749
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	2 cut(s)	854, 1052
SmoI	CTYRAG	2 cut(s)	854, 1052
SpeI	ACTAGT	1 cut(s)	1040
SspMI	CTAG	4 cut(s)	143, 903, 954, 1041
TaaI	ACNGT	3 cut(s)	349, 398, 1129
TaqI	TCGA	7 cut(s)	124, 539, 554, 749, 911, 947, 1257
TfiI	GAWTC	9 cut(s)	179, 455, 505, 527, 551, 629, 700, 751, 1166
Tru1I	TTAA	3 cut(s)	165, 225, 1053
Tru9I	TTAA	3 cut(s)	165, 225, 1053
TscAI	CASTG	4 cut(s)	403, 687, 825, 1156
TseFI	GTSAC	3 cut(s)	235, 956, 1145
Tsp45I	GTSAC	3 cut(s)	235, 956, 1145
TspDTI	ATGAA	6 cut(s)	294, 396, 420, 426, 788, 987
TspGWI	ACGGA	1 cut(s)	1178
TspRI	CASTG	4 cut(s)	403, 687, 825, 1156
Vha464I	CTTAAG	1 cut(s)	1052
VspI	ATTAAT	1 cut(s)	165
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1192
XspI	CTAG	4 cut(s)	143, 903, 954, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.