Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006770

Physical Location & Seq

Genomic Coordinates Forward (+)

4222179 .. 4225577

Gene Structure 3399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07010.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGCGAACCGCACGGATCCGTCGGCGAAGAACATAAGGGGCACGAACCCCCAGAACCTGATCGAGAAGATCGTACGGACCAAGATATACAACAACACCTATTGGAAGGAGCAGTGCTTCGGATTGACGGCGGAGACGCTTGTGGACAAGGCCATGGAGCTCGACCACATCGGCGGGACCTTCGGCGGTAACCGGAAGCCGACGCCGTTCATGTGCCTTGTGATGAAGATGCTCCAGATCCAACCGGAGAAGGAAATCGTCATCGAGTTTATTAAGAACGACGACTACAAATATGTCCGGGTGCTTGGTGCATTTTACTTGCGGATTACAGGCAGCGATACTGATGTTTACCAGTACCTTGAGCCTTTGTACAATGACTATCGGAAGTTGAGGAGTAAATTGGCTGACGGACGTTTCTCATTGACTCATGTGGATGAGCTTATTGATGATCTTTTGACAAAAGACTACTCATGTGACATTGCCATGCCAAGAATTAAGAAAAGGTGGACTCTCGAATCACTTGGTTTGTTGGAACCTAGAAAAAGTGCTTTGGAGGAGGACTTTGAGGAGGAGGAGGAAGAGAAAGAGGAGAACGATCAGCTTAATGGAATGGATGATGAAGGCCATGATAAGGAGTATTACCGTGGCCGAAGTCCTGAAAGGGAAAGAGACAGGGATAGAAGACGTGACAGGGACCGATACAGGGATCGTGATTATGACAGAGAATATGACAGGGATAGAGACTATGACAGAGAACGTGGACGTGGGAGAGAAAGAGATAGGAACAGGGAGAGGGACCGGGACCGGGACAGATATAGACTGAGAGATGAAAAGGATTATGGCCGTGACAGGGATCGGGAGTGGGATGGTAGGGAGCGTGAGAGGCGAGACAGGGATCGTGGCAGGAGGAGGAGCCATTCGAGGAGCCGAAGTAGGAGTAGGGAGCACAAGGATCGTGATGGTGGGGATCACCGCAAGAGACATGCCCGCAGCATCAGTCCTAGGAGGCGCGATGGGCCTGATGATGGCACTCGTGAGGAGCCAAGGAAGAAGAAAGAGAAGAAGGAGAAGAAGGCTGATGGCACAGACCATCCTGATCCTGAGATTGCTGAAGCCAACAGGCTCCGAGCATCTCTTGGTTTGAAGCCCCTTAATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

387

Amino Acids

46.64

Weight (kDa)

8.92

Isoelectric Point (pI)

49.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP38	PF03371	10 - 173	8.1e-68	PRP38 family
PRP38_assoc	PF12871	179 - 271	2.6e-09	Pre-mRNA-splicing factor 38-associated hydrophilic C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40650
fragaria_vesca	FvH4_6g07010
malus_domestica	MD04G1196900.v1.1 MD12G1209800.v1.1
prunus_persica	Prupe.1G236900_v2.0.a1
pyrus_communis	pycom04g17410 pycom12g19720
rosa_chinensis	RchiOBHm_Chr3g0456541
rosa_laevigata	RLG00000025296
rosa_multiflora	Rmu_sc0000161.1_g000061 Rmu_sc0017908.1_g000013 Rmu_sc0023316.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237330 Rroxscaffold_6G00422650
rosa_rugosa	Rorug03G0013800
rosa_samantha	Rh1BG185200 Rh1DG215000 Rh3AG074400 Rh3BG076100 Rh3CG075800 Rh3DG077900 Rh5AG404200 Rh5DG431400 Rh7AG053000 Rh7BG052600
rosa_wichuraiana	Rw3G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1011
AciI	CCGC	7 cut(s)	10, 131, 174, 186, 322, 973, 988
AclWI	GGATC	9 cut(s)	11, 24, 232, 714, 861, 903, 960, 975, 1091
AcoI	YGGCCR	2 cut(s)	646, 841
AcuI	CTGAAG	1 cut(s)	1131
AcyI	GRCGYC	1 cut(s)	203
AfaI	GTAC	3 cut(s)	75, 356, 371
AfiI	CCNNNNNNNGG	5 cut(s)	631, 703, 805, 850, 1025
AgsI	TTSAA	1 cut(s)	1144
AjiI	CACGTC	2 cut(s)	686, 764
AluBI	AGCT	3 cut(s)	160, 439, 601
AluI	AGCT	3 cut(s)	160, 439, 601
Alw21I	GWGCWC	2 cut(s)	162, 948
Alw26I	GTCTC	5 cut(s)	128, 663, 735, 882, 973
AlwI	GGATC	9 cut(s)	11, 24, 232, 714, 861, 903, 960, 975, 1091
AlwNI	CAGNNNCTG	1 cut(s)	58
AoxI	GGCC	5 cut(s)	150, 622, 646, 841, 1016
ApeKI	GCWGC	2 cut(s)	333, 990
AspA2I	CCTAGG	1 cut(s)	1001
AspLEI	GCGC	1 cut(s)	1011
AspS9I	GGNCC	6 cut(s)	78, 177, 694, 796, 802, 1016
AsuC2I	CCSGG	3 cut(s)	299, 800, 806
AsuHPI	GGTGA	1 cut(s)	962
AvaII	GGWCC	5 cut(s)	78, 177, 694, 796, 802
AvrII	CCTAGG	1 cut(s)	1001
BaeGI	GKGCMC	1 cut(s)	44
BaeI	ACNNNNGTAYC	2 cut(s)	330, 363
BamHI	GGATCC	1 cut(s)	16
BanII	GRGCYC	1 cut(s)	162
BauI	CACGAG	1 cut(s)	1032
BbsI	GAAGAC	1 cut(s)	688
Bbv12I	GWGCWC	2 cut(s)	162, 948
BbvI	GCAGC	2 cut(s)	345, 1002
BccI	CCATC	6 cut(s)	860, 953, 1007, 1019, 1073, 1098
BceAI	ACGGC	3 cut(s)	144, 190, 828
BcgI	CGANNNNNNTGC	2 cut(s)	935, 969
BcnI	CCSGG	3 cut(s)	299, 800, 806
BcoDI	GTCTC	5 cut(s)	128, 663, 735, 882, 973
BfaI	CTAG	2 cut(s)	537, 1002
BisI	GCNGC	2 cut(s)	334, 991
BlnI	CCTAGG	1 cut(s)	1001
BlsI	GCNGC	2 cut(s)	335, 992
Bme1390I	CCNGG	3 cut(s)	299, 800, 806
Bme18I	GGWCC	5 cut(s)	78, 177, 694, 796, 802
BmgBI	CACGTC	2 cut(s)	686, 764
BmgT120I	GGNCC	6 cut(s)	78, 177, 694, 796, 802, 1016
BmrFI	CCNGG	3 cut(s)	299, 800, 806
BmsI	GCATC	3 cut(s)	219, 1002, 1139
BpiI	GAAGAC	1 cut(s)	688
BpmI	CTGGAG	1 cut(s)	218
BpuEI	CTTGAG	1 cut(s)	380
BpuMI	CCSGG	3 cut(s)	299, 800, 806
BsaHI	GRCGYC	1 cut(s)	203
BsaJI	CCNNGG	4 cut(s)	153, 643, 1001, 1043
BsaWI	WCCGGW	2 cut(s)	192, 244
BsaXI	ACNNNNNCTCC	2 cut(s)	916, 946
Bsc4I	CCNNNNNNNGG	5 cut(s)	631, 703, 805, 850, 1025
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	477
BseDI	CCNNGG	4 cut(s)	153, 643, 1001, 1043
BseGI	GGATG	4 cut(s)	439, 619, 871, 1090
BseLI	CCNNNNNNNGG	5 cut(s)	631, 703, 805, 850, 1025
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	2 cut(s)	812, 1092
BseNI	ACTGG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	2 cut(s)	345, 1002
Bsh1236I	CGCG	1 cut(s)	1011
BshFI	GGCC	5 cut(s)	152, 624, 648, 843, 1018
BsiHKAI	GWGCWC	2 cut(s)	162, 948
BsiSI	CCGG	5 cut(s)	193, 245, 298, 799, 805
BsiWI	CGTACG	1 cut(s)	73
BslFI	GGGAC	5 cut(s)	190, 707, 809, 815, 821
BslI	CCNNNNNNNGG	5 cut(s)	631, 703, 805, 850, 1025
BsmAI	GTCTC	5 cut(s)	128, 663, 735, 882, 973
BsmBI	CGTCTC	1 cut(s)	128
BsmFI	GGGAC	5 cut(s)	190, 707, 809, 815, 821
BsnI	GGCC	5 cut(s)	152, 624, 648, 843, 1018
Bsp1286I	GDGCHC	3 cut(s)	44, 162, 948
Bsp1407I	TGTACA	1 cut(s)	369
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	7 cut(s)	10, 131, 174, 186, 322, 973, 988
BspANI	GGCC	5 cut(s)	152, 624, 648, 843, 1018
BspCNI	CTCAG	2 cut(s)	813, 1093
BspFNI	CGCG	1 cut(s)	1011
BspPI	GGATC	9 cut(s)	11, 24, 232, 714, 861, 903, 960, 975, 1091
BsrDI	GCAATG	1 cut(s)	477
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	4 cut(s)	153, 643, 1001, 1043
BssNI	GRCGYC	1 cut(s)	203
BssSI	CACGAG	1 cut(s)	1032
BssT1I	CCWWGG	3 cut(s)	153, 1001, 1043
Bst2BI	CACGAG	1 cut(s)	1032
Bst4CI	ACNGT	1 cut(s)	644
Bst6I	CTCTTC	1 cut(s)	573
BstACI	GRCGYC	1 cut(s)	203
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	988
BstDEI	CTNAG	2 cut(s)	821, 1101
BstDSI	CCRYGG	2 cut(s)	153, 643
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	4 cut(s)	439, 619, 871, 1090
BstFNI	CGCG	1 cut(s)	1011
BstHHI	GCGC	1 cut(s)	1011
BstMAI	GTCTC	5 cut(s)	128, 663, 735, 882, 973
BstMWI	GCNNNNNNNGC	2 cut(s)	883, 1015
BstNSI	RCATGY	1 cut(s)	986
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	3 cut(s)	297, 798, 804
BstSLI	GKGCMC	1 cut(s)	44
BstUI	CGCG	1 cut(s)	1011
BstV1I	GCAGC	2 cut(s)	345, 1002
BstV2I	GAAGAC	1 cut(s)	688
BstX2I	RGATCY	2 cut(s)	16, 237
BstYI	RGATCY	2 cut(s)	16, 237
BsuRI	GGCC	5 cut(s)	152, 624, 648, 843, 1018
BtgI	CCRYGG	2 cut(s)	153, 643
BtgZI	GCGATG	1 cut(s)	1026
BtrI	CACGTC	2 cut(s)	686, 764
BtsCI	GGATG	4 cut(s)	439, 619, 871, 1090
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	988
CaiI	CAGNNNCTG	1 cut(s)	58
CfoI	GCGC	1 cut(s)	1011
Cfr13I	GGNCC	6 cut(s)	78, 177, 694, 796, 802, 1016
CseI	GACGC	2 cut(s)	145, 211
Csp6I	GTAC	3 cut(s)	74, 355, 370
CviAII	CATG	7 cut(s)	154, 211, 428, 471, 484, 626, 983
CviQI	GTAC	3 cut(s)	74, 355, 370
DdeI	CTNAG	2 cut(s)	821, 1101
EaeI	YGGCCR	2 cut(s)	646, 841
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
EciI	GGCGGA	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	3 cut(s)	153, 1001, 1043
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	5 cut(s)	78, 177, 694, 796, 802
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	1131
Eco91I	GGTNACC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	188
EcoT14I	CCWWGG	3 cut(s)	153, 1001, 1043
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	3 cut(s)	153, 1001, 1043
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	7 cut(s)	157, 214, 431, 474, 487, 629, 986
FaqI	GGGAC	5 cut(s)	190, 707, 809, 815, 821
FatI	CATG	7 cut(s)	153, 210, 427, 470, 483, 625, 982
FauI	CCCGC	2 cut(s)	167, 995
Fnu4HI	GCNGC	2 cut(s)	334, 991
FokI	GGATG	4 cut(s)	446, 626, 878, 1077
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	334, 991
FspBI	CTAG	2 cut(s)	537, 1002
GlaI	GCGC	1 cut(s)	1010
GluI	GCNGC	2 cut(s)	334, 991
GsuI	CTGGAG	1 cut(s)	218
HaeIII	GGCC	5 cut(s)	152, 624, 648, 843, 1018
HapII	CCGG	5 cut(s)	193, 245, 298, 799, 805
HgaI	GACGC	2 cut(s)	145, 211
HhaI	GCGC	1 cut(s)	1011
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	7 cut(s)	157, 214, 431, 474, 487, 629, 986
Hin6I	GCGC	1 cut(s)	1009
HinP1I	GCGC	1 cut(s)	1009
HinfI	GANTC	3 cut(s)	424, 508, 515
HpaII	CCGG	5 cut(s)	193, 245, 298, 799, 805
HphI	GGTGA	1 cut(s)	962
Hpy166II	GTNNAC	4 cut(s)	145, 349, 507, 761
Hpy188I	TCNGA	4 cut(s)	122, 384, 1127, 1160
Hpy8I	GTNNAC	4 cut(s)	145, 349, 507, 761
Hpy99I	CGWCG	3 cut(s)	25, 205, 284
HpyAV	CCTTC	6 cut(s)	100, 190, 244, 614, 1057, 1066
HpyCH4III	ACNGT	1 cut(s)	644
HpyCH4IV	ACGT	4 cut(s)	412, 685, 757, 763
HpyCH4V	TGCA	1 cut(s)	311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	883, 1015
HpyF3I	CTNAG	2 cut(s)	821, 1101
HpySE526I	ACGT	4 cut(s)	412, 685, 757, 763
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	7 cut(s)	157, 214, 431, 474, 487, 629, 986
HspAI	GCGC	1 cut(s)	1009
LmnI	GCTCC	9 cut(s)	109, 157, 237, 874, 912, 924, 943, 1039, 1128
Lsp1109I	GCAGC	2 cut(s)	345, 1002
LweI	GCATC	3 cut(s)	219, 1002, 1139
MaeI	CTAG	2 cut(s)	537, 1002
MaeII	ACGT	4 cut(s)	412, 685, 757, 763
MaeIII	GTNAC	4 cut(s)	188, 473, 686, 845
MboII	GAAGA	9 cut(s)	40, 79, 238, 590, 693, 1060, 1063, 1072, 1081
MflI	RGATCY	2 cut(s)	16, 237
MhlI	GDGCHC	3 cut(s)	44, 162, 948
MluCI	AATT	2 cut(s)	398, 492
MlyI	GAGTC	2 cut(s)	418, 502
MmeI	TCCRAC	2 cut(s)	265, 510
MseI	TTAA	4 cut(s)	273, 495, 603, 1152
MslI	CAYNNNNRTG	2 cut(s)	432, 482
MspI	CCGG	5 cut(s)	193, 245, 298, 799, 805
MspR9I	CCNGG	3 cut(s)	299, 800, 806
MvnI	CGCG	1 cut(s)	1011
MwoI	GCNNNNNNNGC	2 cut(s)	883, 1015
NciI	CCSGG	3 cut(s)	299, 800, 806
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	7 cut(s)	157, 214, 431, 474, 487, 629, 986
NmuCI	GTSAC	3 cut(s)	473, 686, 845
NspI	RCATGY	1 cut(s)	986
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	515
Pfl23II	CGTACG	1 cut(s)	73
PkrI	GCNGC	2 cut(s)	335, 992
PleI	GAGTC	2 cut(s)	418, 502
PpsI	GAGTC	2 cut(s)	418, 502
PpuMI	RGGWCCY	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	188
PspLI	CGTACG	1 cut(s)	73
PspPI	GGNCC	6 cut(s)	78, 177, 694, 796, 802, 1016
PspPPI	RGGWCCY	1 cut(s)	177
PsrI	GAACNNNNNNTAC	2 cut(s)	269, 301
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	16, 237
RsaI	GTAC	3 cut(s)	75, 356, 371
RsaNI	GTAC	3 cut(s)	74, 355, 370
RseI	CAYNNNNRTG	2 cut(s)	432, 482
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	4 cut(s)	273, 495, 603, 1152
SatI	GCNGC	2 cut(s)	334, 991
Sau96I	GGNCC	6 cut(s)	78, 177, 694, 796, 802, 1016
SchI	GAGTC	2 cut(s)	418, 502
ScrFI	CCNGG	3 cut(s)	299, 800, 806
SduI	GDGCHC	3 cut(s)	44, 162, 948
SfaNI	GCATC	3 cut(s)	219, 1002, 1139
SinI	GGWCC	5 cut(s)	78, 177, 694, 796, 802
SmiMI	CAYNNNNRTG	2 cut(s)	432, 482
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	2 cut(s)	398, 492
SsiI	CCGC	7 cut(s)	10, 131, 174, 186, 322, 973, 988
SspMI	CTAG	2 cut(s)	537, 1002
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	3 cut(s)	297, 798, 804
StyI	CCWWGG	3 cut(s)	153, 1001, 1043
TaaI	ACNGT	1 cut(s)	644
TaiI	ACGT	4 cut(s)	415, 688, 760, 766
TaqI	TCGA	5 cut(s)	63, 162, 264, 513, 920
TaqII	GACCGA	1 cut(s)	711
TasI	AATT	2 cut(s)	398, 492
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	1 cut(s)	515
Tru1I	TTAA	4 cut(s)	273, 495, 603, 1152
Tru9I	TTAA	4 cut(s)	273, 495, 603, 1152
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	3 cut(s)	473, 686, 845
TseI	GCWGC	2 cut(s)	333, 990
Tsp45I	GTSAC	3 cut(s)	473, 686, 845
TspDTI	ATGAA	4 cut(s)	199, 239, 633, 843
TspGWI	ACGGA	4 cut(s)	9, 29, 91, 423
TspRI	CASTG	1 cut(s)	119
VpaK11BI	GGWCC	5 cut(s)	78, 177, 694, 796, 802
XceI	RCATGY	1 cut(s)	986
XmaJI	CCTAGG	1 cut(s)	1001
XspI	CTAG	2 cut(s)	537, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.