Prupe.1G236900_v2.0.a1

Pre-mRNA-splicing factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
25132686 .. 25136384
3699 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G236900.1

Sequence Viewer

Length: 1281 bp
ATGCAAACTCAACCCTTGGATAAGTGGCTGTACAGATACAGCCAAGGCACCACAGAATTTTCGATTTATCTCTATCTCACTCTGATTTTAGGGTTAGGGTCTCTCGTTTCGTCCACTTTCCATTTCAATTTCTCTCGTCTTCCAGTTATGGCGAACCGTACAGACCCGTCGGCCAAGAGCATAAGGGGGACGAACCCGCAGAACCTGGTGGAGAAGATTGTACGGTCGAAGATATACCAGAACACGTACTGGAAGGAGCAGTGCTTCGGGTTGACGGCCGAAACCCTAGTGGACAAAGCCATGGAGCTCGACCACATCGGTGGGACCTTCGGAGGTAACCGTAAGCCCACGCCTTTCATGTGCCTCGTGATGAAGATGCTTCAGATCCAGCCGGAGAAGGAGATCGTTATTGAGTTCATAAAAAACGACGACTACAAATATGTCCGGATACTTGGTGCATTTTATTTGCGTCTTACGGGCACGGATACTGATGTGTACCAGTACCTAGAGCCTCTGTACAATGACTATCGGAAGTTGAGGAGAAAATTGGCTGATGGGAATTATGCCTTGACACATGTGGATGAGGTTATTGATGAACTTCTGACAAAAGATTACTCATGTGACATTGCGATGCCACGAATTAAGAAAAGATGGACTCTGGAAGCAACTGGTTCGTTGGAACTGAGAAAAAGTGCTTTGGAGGAGGACTTTGAGGAGGAGGAAGAGAAAGAGGAGAATGATCAACTTGATGGAATGGATGATGAAGTCCATGATAGGGATTATTATCGTGGCCGAAGCCCTGTAAGGGAAAGGGACAGGGATAGAAGACGCGACAGTCACAGATACAGGGACCACGATTATGACAGAGACTATGATAGGGATAGAGACTATGATAGGGAACGTGGACACGGACGAGAAAGAGATAGGAATAGAGACAGAGATAGGGATCGGGACCGTTATCGACTAAGAGATGAAAAGGATCTTGGTCGCGATAGGGGCCGGGATAGGCGAGAGAGGGATCGTGGCAGGAGGAGGAGCTATTCAAGGAGCAGAAGTCGGAGTAGGGATCGTGAGGGTGGGGATAATCGCAAAAGACATGGCCGCAGCAGCATGAGTCCCAGGAGACGGGATGGGCATGATGAGCATGGCACTCGTGAGGAGTCGAAGAAGAAGAAAGAAAAGAAGGAGAAGAAGACTGATGGGACAGACCATCCAGATCCAGAGATTGCTGAAGCGAACAGGCTCCGTGCATCTCTTGGATTGAAACCTCTGAAGATGTGA

Protein Analysis

427

Amino Acids

51.02

Weight (kDa)

9.12

Isoelectric Point (pI)

50.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 834
AccB1I GGYRCC 1 cut(s) 47
AccII CGCG 2 cut(s) 831, 990
AccIII TCCGGA 1 cut(s) 444
AciI CCGC 2 cut(s) 197, 1102
AclWI GGATC 6 cut(s) 379, 954, 987, 1026, 1074, 1211
AcoI YGGCCR 4 cut(s) 171, 276, 790, 1099
AcsI RAATTY 1 cut(s) 56
AcuI CTGAAG 2 cut(s) 365, 1251
AfaI GTAC 7 cut(s) 32, 160, 222, 248, 497, 503, 518
AfiI CCNNNNNNNGG 3 cut(s) 775, 805, 1125
AflIII ACRYGT 2 cut(s) 243, 574
AgsI TTSAA 3 cut(s) 127, 1044, 1264
AjnI CCWGG 2 cut(s) 204, 1118
AjuI GAANNNNNNNTTGG 2 cut(s) 966, 998
AleI CACNNNNGTG 1 cut(s) 318
AluBI AGCT 2 cut(s) 307, 1038
AluI AGCT 2 cut(s) 307, 1038
Alw21I GWGCWC 1 cut(s) 309
Alw26I GTCTC 5 cut(s) 105, 861, 879, 927, 1117
AlwI GGATC 6 cut(s) 379, 954, 987, 1026, 1074, 1211
AlwNI CAGNNNCTG 1 cut(s) 205
Aor13HI TCCGGA 1 cut(s) 444
AoxI GGCC 5 cut(s) 171, 276, 790, 997, 1099
ApeKI GCWGC 2 cut(s) 1104, 1107
ApoI RAATTY 1 cut(s) 56
AspS9I GGNCC 4 cut(s) 324, 850, 952, 997
AsuC2I CCSGG 1 cut(s) 1001
AvaII GGWCC 3 cut(s) 324, 850, 952
BaeGI GKGCMC 1 cut(s) 482
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 309
BauI CACGAG 2 cut(s) 365, 1152
BbsI GAAGAC 3 cut(s) 131, 832, 1199
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 2 cut(s) 1116, 1119
BccI CCATC 6 cut(s) 548, 645, 743, 1124, 1193, 1218
BceAI ACGGC 1 cut(s) 291
BcgI CGANNNNNNTGC 4 cut(s) 654, 688, 1133, 1167
BciT130I CCWGG 2 cut(s) 206, 1120
BciVI GTATCC 2 cut(s) 441, 478
BclI TGATCA 1 cut(s) 739
BcnI CCSGG 1 cut(s) 1001
BcoDI GTCTC 5 cut(s) 105, 861, 879, 927, 1117
BfaI CTAG 2 cut(s) 287, 506
BfuI GTATCC 2 cut(s) 441, 478
BisI GCNGC 3 cut(s) 1102, 1105, 1108
BlsI GCNGC 3 cut(s) 1103, 1106, 1109
Bme1390I CCNGG 3 cut(s) 206, 1001, 1120
Bme18I GGWCC 3 cut(s) 324, 850, 952
BmgT120I GGNCC 4 cut(s) 324, 850, 952, 997
BmiI GGNNCC 6 cut(s) 49, 325, 851, 953, 998, 1244
BmrFI CCNGG 3 cut(s) 206, 1001, 1120
BmsI GCATC 3 cut(s) 366, 621, 1259
BpiI GAAGAC 3 cut(s) 131, 832, 1199
BpuMI CCSGG 1 cut(s) 1001
BsaAI YACGTR 1 cut(s) 246
BsaBI GATNNNNATC 2 cut(s) 783, 945
BsaI GGTCTC 1 cut(s) 105
BsaJI CCNNGG 4 cut(s) 15, 43, 300, 1118
BsaWI WCCGGW 1 cut(s) 444
BsaXI ACNNNNNCTCC 2 cut(s) 1039, 1069
Bsc4I CCNNNNNNNGG 3 cut(s) 775, 805, 1125
Bse1I ACTGG 4 cut(s) 143, 254, 499, 673
Bse3DI GCAATG 1 cut(s) 624
Bse8I GATNNNNATC 2 cut(s) 783, 945
BseAI TCCGGA 1 cut(s) 444
BseBI CCWGG 2 cut(s) 206, 1120
BseDI CCNNGG 4 cut(s) 15, 43, 300, 1118
BseGI GGATG 4 cut(s) 586, 763, 1135, 1210
BseJI GATNNNNATC 2 cut(s) 783, 945
BseLI CCNNNNNNNGG 3 cut(s) 775, 805, 1125
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 1 cut(s) 674
BseNI ACTGG 4 cut(s) 143, 254, 499, 673
BseRI GAGGAG 8 cut(s) 553, 716, 728, 731, 746, 1045, 1048, 1172
BseSI GKGCMC 1 cut(s) 482
BseX3I CGGCCG 1 cut(s) 276
BseXI GCAGC 2 cut(s) 1116, 1119
Bsh1236I CGCG 2 cut(s) 831, 990
Bsh1285I CGRYCG 2 cut(s) 227, 279
BshFI GGCC 5 cut(s) 173, 278, 792, 999, 1101
BshNI GGYRCC 1 cut(s) 47
BsiEI CGRYCG 2 cut(s) 227, 279
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 3 cut(s) 392, 445, 1000
BslFI GGGAC 7 cut(s) 202, 337, 827, 863, 965, 1101, 1216
BslI CCNNNNNNNGG 3 cut(s) 775, 805, 1125
BsmAI GTCTC 5 cut(s) 105, 861, 879, 927, 1117
BsmBI CGTCTC 1 cut(s) 1117
BsmFI GGGAC 7 cut(s) 202, 337, 827, 863, 965, 1101, 1216
BsnI GGCC 5 cut(s) 173, 278, 792, 999, 1101
Bso31I GGTCTC 1 cut(s) 105
Bsp1286I GDGCHC 2 cut(s) 309, 482
Bsp13I TCCGGA 1 cut(s) 444
Bsp1407I TGTACA 2 cut(s) 30, 516
Bsp143I GATC 8 cut(s) 384, 402, 739, 946, 979, 1018, 1066, 1216
Bsp19I CCATGG 1 cut(s) 300
Bsp68I TCGCGA 1 cut(s) 990
BspACI CCGC 2 cut(s) 197, 1102
BspANI GGCC 5 cut(s) 173, 278, 792, 999, 1101
BspCNI CTCAG 1 cut(s) 675
BspEI TCCGGA 1 cut(s) 444
BspFNI CGCG 2 cut(s) 831, 990
BspLI GGNNCC 6 cut(s) 49, 325, 851, 953, 998, 1244
BspPI GGATC 6 cut(s) 379, 954, 987, 1026, 1074, 1211
BspT107I GGYRCC 1 cut(s) 47
BspTNI GGTCTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 624
BsrGI TGTACA 2 cut(s) 30, 516
BsrI ACTGG 4 cut(s) 143, 254, 499, 673
BssECI CCNNGG 4 cut(s) 15, 43, 300, 1118
BssMI GATC 8 cut(s) 384, 402, 739, 946, 979, 1018, 1066, 1216
BssSI CACGAG 2 cut(s) 365, 1152
BssT1I CCWWGG 3 cut(s) 15, 43, 300
Bst2BI CACGAG 2 cut(s) 365, 1152
Bst2UI CCWGG 2 cut(s) 206, 1120
Bst4CI ACNGT 5 cut(s) 158, 225, 341, 836, 956
Bst6I CTCTTC 1 cut(s) 717
BstAUI TGTACA 2 cut(s) 30, 516
BstBAI YACGTR 1 cut(s) 246
BstDEI CTNAG 2 cut(s) 683, 965
BstDSI CCRYGG 1 cut(s) 300
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 4 cut(s) 586, 763, 1135, 1210
BstFNI CGCG 2 cut(s) 831, 990
BstKTI GATC 8 cut(s) 387, 405, 742, 949, 982, 1021, 1069, 1219
BstMAI GTCTC 5 cut(s) 105, 861, 879, 927, 1117
BstMBI GATC 8 cut(s) 384, 402, 739, 946, 979, 1018, 1066, 1216
BstMCI CGRYCG 2 cut(s) 227, 279
BstMWI GCNNNNNNNGC 3 cut(s) 996, 1107, 1141
BstNI CCWGG 2 cut(s) 206, 1120
BstNSI RCATGY 1 cut(s) 578
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 3 cut(s) 204, 999, 1118
BstSLI GKGCMC 1 cut(s) 482
BstUI CGCG 2 cut(s) 831, 990
BstV1I GCAGC 2 cut(s) 1116, 1119
BstV2I GAAGAC 3 cut(s) 131, 832, 1199
BstX2I RGATCY 3 cut(s) 384, 979, 1216
BstXI CCANNNNNNTGG 1 cut(s) 320
BstYI RGATCY 3 cut(s) 384, 979, 1216
BstZI CGGCCG 1 cut(s) 276
BsuI GTATCC 2 cut(s) 441, 478
BsuRI GGCC 5 cut(s) 173, 278, 792, 999, 1101
BtgI CCRYGG 1 cut(s) 300
BtgZI GCGATG 1 cut(s) 644
BtsCI GGATG 4 cut(s) 586, 763, 1135, 1210
BtsI GCAGTG 1 cut(s) 266
BtsIMutI CAGTG 1 cut(s) 266
BtuMI TCGCGA 1 cut(s) 990
CaiI CAGNNNCTG 1 cut(s) 205
Cfr13I GGNCC 4 cut(s) 324, 850, 952, 997
CseI GACGC 2 cut(s) 458, 837
CsiI ACCWGGT 1 cut(s) 204
Csp6I GTAC 7 cut(s) 31, 159, 221, 247, 496, 502, 517
CviAII CATG 9 cut(s) 301, 358, 575, 618, 770, 1097, 1111, 1136, 1145
CviQI GTAC 7 cut(s) 31, 159, 221, 247, 496, 502, 517
DdeI CTNAG 2 cut(s) 683, 965
DpnI GATC 8 cut(s) 386, 404, 741, 948, 981, 1020, 1068, 1218
DpnII GATC 8 cut(s) 384, 402, 739, 946, 979, 1018, 1066, 1216
DrdI GACNNNNNNGTC 1 cut(s) 834
DseDI GACNNNNNNGTC 1 cut(s) 834
EaeI YGGCCR 4 cut(s) 171, 276, 790, 1099
EagI CGGCCG 1 cut(s) 276
Eam1104I CTCTTC 1 cut(s) 717
EarI CTCTTC 1 cut(s) 717
Ecl136II GAGCTC 1 cut(s) 307
EclXI CGGCCG 1 cut(s) 276
Eco130I CCWWGG 3 cut(s) 15, 43, 300
Eco24I GRGCYC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 105
Eco47I GGWCC 3 cut(s) 324, 850, 952
Eco52I CGGCCG 1 cut(s) 276
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 2 cut(s) 365, 1251
Eco91I GGTNACC 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 324
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 204, 1118
EcoT14I CCWWGG 3 cut(s) 15, 43, 300
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 3 cut(s) 15, 43, 300
Esp3I CGTCTC 1 cut(s) 1117
FaeI CATG 9 cut(s) 304, 361, 578, 621, 773, 1100, 1114, 1139, 1148
FaqI GGGAC 7 cut(s) 202, 337, 827, 863, 965, 1101, 1216
FatI CATG 9 cut(s) 300, 357, 574, 617, 769, 1096, 1110, 1135, 1144
FauI CCCGC 1 cut(s) 204
FbaI TGATCA 1 cut(s) 739
Fnu4HI GCNGC 3 cut(s) 1102, 1105, 1108
FokI GGATG 4 cut(s) 593, 770, 1142, 1197
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 3 cut(s) 1102, 1105, 1108
FspBI CTAG 2 cut(s) 287, 506
GluI GCNGC 3 cut(s) 1102, 1105, 1108
HaeIII GGCC 5 cut(s) 173, 278, 792, 999, 1101
HapII CCGG 3 cut(s) 392, 445, 1000
HgaI GACGC 2 cut(s) 458, 837
Hin1II CATG 9 cut(s) 304, 361, 578, 621, 773, 1100, 1114, 1139, 1148
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HinfI GANTC 3 cut(s) 655, 1114, 1160
HpaII CCGG 3 cut(s) 392, 445, 1000
Hpy166II GTNNAC 5 cut(s) 114, 273, 292, 496, 905
Hpy188I TCNGA 7 cut(s) 84, 332, 384, 531, 603, 1059, 1272
Hpy188III TCNNGA 9 cut(s) 367, 445, 659, 950, 989, 1070, 1154, 1214, 1220
Hpy8I GTNNAC 5 cut(s) 114, 273, 292, 496, 905
Hpy99I CGWCG 2 cut(s) 172, 431
HpyAV CCTTC 4 cut(s) 247, 337, 391, 1177
HpyCH4III ACNGT 5 cut(s) 158, 225, 341, 836, 956
HpyCH4IV ACGT 2 cut(s) 245, 901
HpyCH4V TGCA 3 cut(s) 4, 458, 1250
HpyF10VI GCNNNNNNNGC 3 cut(s) 996, 1107, 1141
HpyF3I CTNAG 2 cut(s) 683, 965
HpySE526I ACGT 2 cut(s) 245, 901
Hsp92II CATG 9 cut(s) 304, 361, 578, 621, 773, 1100, 1114, 1139, 1148
Kpn2I TCCGGA 1 cut(s) 444
Ksp22I TGATCA 1 cut(s) 739
Kzo9I GATC 8 cut(s) 384, 402, 739, 946, 979, 1018, 1066, 1216
LmnI GCTCC 5 cut(s) 256, 304, 1035, 1047, 1248
Lsp1109I GCAGC 2 cut(s) 1116, 1119
LweI GCATC 3 cut(s) 366, 621, 1259
MabI ACCWGGT 1 cut(s) 204
MaeI CTAG 2 cut(s) 287, 506
MaeII ACGT 2 cut(s) 245, 901
MaeIII GTNAC 3 cut(s) 335, 620, 836
MalI GATC 8 cut(s) 386, 404, 741, 948, 981, 1020, 1068, 1218
MboI GATC 8 cut(s) 384, 402, 739, 946, 979, 1018, 1066, 1216
MflI RGATCY 3 cut(s) 384, 979, 1216
MhlI GDGCHC 2 cut(s) 309, 482
MluCI AATT 5 cut(s) 56, 127, 545, 559, 639
MlyI GAGTC 3 cut(s) 649, 1123, 1169
MmeI TCCRAC 2 cut(s) 657, 1037
MroI TCCGGA 1 cut(s) 444
MseI TTAA 1 cut(s) 642
MslI CAYNNNNRTG 4 cut(s) 318, 579, 629, 858
MspI CCGG 3 cut(s) 392, 445, 1000
MspR9I CCNGG 3 cut(s) 206, 1001, 1120
MvaI CCWGG 2 cut(s) 206, 1120
MvnI CGCG 2 cut(s) 831, 990
MwoI GCNNNNNNNGC 3 cut(s) 996, 1107, 1141
NciI CCSGG 1 cut(s) 1001
NcoI CCATGG 1 cut(s) 300
NdeII GATC 8 cut(s) 384, 402, 739, 946, 979, 1018, 1066, 1216
NlaIII CATG 9 cut(s) 304, 361, 578, 621, 773, 1100, 1114, 1139, 1148
NlaIV GGNNCC 6 cut(s) 49, 325, 851, 953, 998, 1244
NmuCI GTSAC 2 cut(s) 620, 836
NruI TCGCGA 1 cut(s) 990
NspI RCATGY 1 cut(s) 578
OliI CACNNNNGTG 1 cut(s) 318
PciI ACATGT 1 cut(s) 574
PkrI GCNGC 3 cut(s) 1103, 1106, 1109
PleI GAGTC 3 cut(s) 649, 1122, 1168
PpsI GAGTC 3 cut(s) 649, 1122, 1168
Ppu21I YACGTR 1 cut(s) 246
PpuMI RGGWCCY 1 cut(s) 324
PscI ACATGT 1 cut(s) 574
Psp124BI GAGCTC 1 cut(s) 309
Psp5II RGGWCCY 1 cut(s) 324
Psp6I CCWGG 2 cut(s) 204, 1118
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 2 cut(s) 204, 1118
PspN4I GGNNCC 6 cut(s) 49, 325, 851, 953, 998, 1244
PspPI GGNCC 4 cut(s) 324, 850, 952, 997
PspPPI RGGWCCY 1 cut(s) 324
PstNI CAGNNNCTG 1 cut(s) 205
PsuI RGATCY 3 cut(s) 384, 979, 1216
RruI TCGCGA 1 cut(s) 990
RsaI GTAC 7 cut(s) 32, 160, 222, 248, 497, 503, 518
RsaNI GTAC 7 cut(s) 31, 159, 221, 247, 496, 502, 517
RseI CAYNNNNRTG 4 cut(s) 318, 579, 629, 858
SacI GAGCTC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 642
SatI GCNGC 3 cut(s) 1102, 1105, 1108
Sau3AI GATC 8 cut(s) 384, 402, 739, 946, 979, 1018, 1066, 1216
Sau96I GGNCC 4 cut(s) 324, 850, 952, 997
SchI GAGTC 3 cut(s) 649, 1123, 1169
ScrFI CCNGG 3 cut(s) 206, 1001, 1120
SduI GDGCHC 2 cut(s) 309, 482
SexAI ACCWGGT 1 cut(s) 204
SfaNI GCATC 3 cut(s) 366, 621, 1259
SinI GGWCC 3 cut(s) 324, 850, 952
SmiMI CAYNNNNRTG 4 cut(s) 318, 579, 629, 858
Sse9I AATT 5 cut(s) 56, 127, 545, 559, 639
SsiI CCGC 2 cut(s) 197, 1102
SspMI CTAG 2 cut(s) 287, 506
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 3 cut(s) 204, 999, 1118
StyI CCWWGG 3 cut(s) 15, 43, 300
TaaI ACNGT 5 cut(s) 158, 225, 341, 836, 956
TaiI ACGT 2 cut(s) 248, 904
TaqI TCGA 5 cut(s) 62, 227, 309, 961, 1163
TasI AATT 5 cut(s) 56, 127, 545, 559, 639
TatI WGTACW 2 cut(s) 30, 516
TauI GCSGC 1 cut(s) 1104
Tru1I TTAA 1 cut(s) 642
Tru9I TTAA 1 cut(s) 642
TscAI CASTG 1 cut(s) 266
TseFI GTSAC 2 cut(s) 620, 836
TseI GCWGC 2 cut(s) 1104, 1107
Tsp45I GTSAC 2 cut(s) 620, 836
TspDTI ATGAA 6 cut(s) 346, 386, 406, 609, 777, 987
TspGWI ACGGA 3 cut(s) 497, 924, 1235
TspRI CASTG 1 cut(s) 266
VpaK11BI GGWCC 3 cut(s) 324, 850, 952
XapI RAATTY 1 cut(s) 56
XceI RCATGY 1 cut(s) 578
XspI CTAG 2 cut(s) 287, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.