Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006770

Physical Location & Seq

Genomic Coordinates Reverse (-)

28512416 .. 28515861

Gene Structure 3446 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1196900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGCGAACCGTACGGACCCGTCGGCGAAGAGCATAAGGGGGACGAACCCGCAGAACCTGGTGGAGAAGATCGTACGGACGAAGATATACCAGAACACGTACTGGAAGGAGCAGTGCTTCGGGTTGACGGCCGAAACACTAGTCGACAAAGCCATGGAGCTCGACCACATCGGCGGCACCTTCGGCGGCAACCGGAAGCCCACGCCTTTCATGTGCCTCGTCATGAAGATGCTTCAGATCCAGCCGGAGAAGGAGATCGTTATCGAGTTCATAAAAAATGACGATTACAAGTACGTTCGGATACTCGGTGCATTTTATTTGCGGCTTACGGGAACTGATACTGATGTCTACCAGTACCTAGAGCCTTTGTATAATGACTATCGGAAGTTGAGGAGGAAACTGCCTGATGGGAATTTTACCTTGACGCATGTGGATGAGGTTATTGATGAACTTCTCACAAATGATTACTCATGTGACATTGCAATGCCACGAATTAAAAAAAGATGGACTCTCGAAGCAACTGGTTCATTGGAACTCAGGAAAAGTGCTTTGGAGGAGGACTTTGAGGAGGAGGAAGAGAAAGAGGAGAATGTTCAAGTTGATGGAATGGATGAAGATGTCCATGATAGGGATTATTATCATGACCGAAGCCCTGCCAGGGAAAGGGAAAGGGATAGAAGACGCGACAGTCACAGATACAGGGACCGAGATTATGGCAGAGACTATGATAGGGATAGAGACTATGACAGGGAACACGGACGGTGGCGTGAAAGAGATAGGGACAGAGACAGGGATAGGGATCGGGACCATGATCGGCTGAGAGATGAAAAGGATTATGGTCGTGATAGGGATAGGGATCGGGAAAGGGATTGGGACAGGCGAGAAAGGGATCGTGGCAGGAGGAGGAGCCGTTCAAGAAGCAGAAGTCGTAGTAGAGATCGTGATGGTGGAGATAGAGATCGCAAGAGACACGCCCGCAGCATTAGTCCCAGAAGACCTGATCGTGAGGAGCCGAAGAAGAAGAAAGAAAAGAAGAAGGAGAAGAAGGATGATGGCACAGACCATCCGGATCCAGAGATTGCTGAAGCAAACAGACTCCGAGCATCTCTTGGGTTGAAACCCCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

377

Amino Acids

45.6

Weight (kDa)

8.81

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP38	PF03371	10 - 173	7.8e-67	PRP38 family
PRP38_assoc	PF12871	180 - 270	2.1e-07	Pre-mRNA-splicing factor 38-associated hydrophilic C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40650
fragaria_vesca	FvH4_6g07010
malus_domestica	MD04G1196900.v1.1 MD12G1209800.v1.1
prunus_persica	Prupe.1G236900_v2.0.a1
pyrus_communis	pycom04g17410 pycom12g19720
rosa_chinensis	RchiOBHm_Chr3g0456541
rosa_laevigata	RLG00000025296
rosa_multiflora	Rmu_sc0000161.1_g000061 Rmu_sc0017908.1_g000013 Rmu_sc0023316.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237330 Rroxscaffold_6G00422650
rosa_rugosa	Rorug03G0013800
rosa_samantha	Rh1BG185200 Rh1DG215000 Rh3AG074400 Rh3BG076100 Rh3CG075800 Rh3DG077900 Rh5AG404200 Rh5DG431400 Rh7AG053000 Rh7BG052600
rosa_wichuraiana	Rw3G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	687
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	2 cut(s)	144, 348
AccII	CGCG	1 cut(s)	684
AccIII	TCCGGA	1 cut(s)	1066
AciI	CCGC	5 cut(s)	50, 174, 186, 322, 976
AclWI	GGATC	6 cut(s)	232, 807, 864, 897, 1064, 1077
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	2 cut(s)	218, 1104
AfaI	GTAC	5 cut(s)	13, 75, 101, 293, 356
AfiI	CCNNNNNNNGG	3 cut(s)	628, 658, 663
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	3 cut(s)	596, 915, 1117
AhlI	ACTAGT	1 cut(s)	139
AjnI	CCWGG	2 cut(s)	57, 656
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AloI	GAACNNNNNNTCC	2 cut(s)	895, 927
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	4 cut(s)	714, 732, 780, 961
AlwI	GGATC	6 cut(s)	232, 807, 864, 897, 1064, 1077
AlwNI	CAGNNNCTG	1 cut(s)	58
Aor13HI	TCCGGA	1 cut(s)	1066
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	978
ApoI	RAATTY	1 cut(s)	412
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AspS9I	GGNCC	3 cut(s)	16, 703, 805
AvaII	GGWCC	3 cut(s)	16, 703, 805
BaeI	ACNNNNGTAYC	2 cut(s)	330, 363
BamHI	GGATCC	1 cut(s)	1069
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	162
BbsI	GAAGAC	2 cut(s)	685, 1000
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	990
BccI	CCATC	6 cut(s)	401, 498, 596, 938, 1046, 1071
BceAI	ACGGC	2 cut(s)	144, 894
BciT130I	CCWGG	2 cut(s)	59, 658
BciVI	GTATCC	1 cut(s)	294
BcoDI	GTCTC	4 cut(s)	714, 732, 780, 961
BcuI	ACTAGT	1 cut(s)	139
BfaI	CTAG	2 cut(s)	140, 359
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	4 cut(s)	175, 187, 323, 979
BlsI	GCNGC	4 cut(s)	176, 188, 324, 980
Bme1390I	CCNGG	2 cut(s)	59, 658
Bme18I	GGWCC	3 cut(s)	16, 703, 805
BmgT120I	GGNCC	3 cut(s)	16, 703, 805
BmiI	GGNNCC	7 cut(s)	18, 178, 704, 806, 908, 1011, 1071
BmrFI	CCNGG	2 cut(s)	59, 658
BmsI	GCATC	2 cut(s)	219, 1112
BpiI	GAAGAC	2 cut(s)	685, 1000
BsaAI	YACGTR	1 cut(s)	99
BsaBI	GATNNNNATC	5 cut(s)	260, 636, 798, 855, 957
BsaJI	CCNNGG	2 cut(s)	153, 657
BsaWI	WCCGGW	2 cut(s)	192, 1066
BsaXI	ACNNNNNCTCC	2 cut(s)	895, 925
Bsc4I	CCNNNNNNNGG	3 cut(s)	628, 658, 663
Bse1I	ACTGG	3 cut(s)	107, 352, 526
Bse3DI	GCAATG	2 cut(s)	477, 489
Bse8I	GATNNNNATC	5 cut(s)	260, 636, 798, 855, 957
BseAI	TCCGGA	1 cut(s)	1066
BseBI	CCWGG	2 cut(s)	59, 658
BseDI	CCNNGG	2 cut(s)	153, 657
BseGI	GGATG	4 cut(s)	439, 616, 1054, 1063
BseJI	GATNNNNATC	5 cut(s)	260, 636, 798, 855, 957
BseLI	CCNNNNNNNGG	3 cut(s)	628, 658, 663
BseMI	GCAATG	2 cut(s)	477, 489
BseMII	CTCAG	2 cut(s)	550, 809
BseNI	ACTGG	3 cut(s)	107, 352, 526
BseRI	GAGGAG	8 cut(s)	406, 569, 581, 584, 599, 916, 919, 1022
BseX3I	CGGCCG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	990
Bsh1236I	CGCG	1 cut(s)	684
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	3 cut(s)	193, 245, 1067
BsiWI	CGTACG	2 cut(s)	11, 73
BslFI	GGGAC	6 cut(s)	55, 716, 794, 818, 887, 972
BslI	CCNNNNNNNGG	3 cut(s)	628, 658, 663
BsmAI	GTCTC	4 cut(s)	714, 732, 780, 961
BsmFI	GGGAC	6 cut(s)	55, 716, 794, 818, 887, 972
BsnI	GGCC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp13I	TCCGGA	1 cut(s)	1066
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	5 cut(s)	50, 174, 186, 322, 976
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	2 cut(s)	549, 810
BspEI	TCCGGA	1 cut(s)	1066
BspFNI	CGCG	1 cut(s)	684
BspHI	TCATGA	2 cut(s)	222, 640
BspLI	GGNNCC	7 cut(s)	18, 178, 704, 806, 908, 1011, 1071
BspPI	GGATC	6 cut(s)	232, 807, 864, 897, 1064, 1077
BspQI	GCTCTTC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	176
BsrDI	GCAATG	2 cut(s)	477, 489
BsrI	ACTGG	3 cut(s)	107, 352, 526
BssECI	CCNNGG	2 cut(s)	153, 657
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	59, 658
Bst4CI	ACNGT	3 cut(s)	11, 689, 762
Bst6I	CTCTTC	2 cut(s)	23, 570
BstBAI	YACGTR	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	976
BstDEI	CTNAG	2 cut(s)	536, 818
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	4 cut(s)	439, 616, 1054, 1063
BstFNI	CGCG	1 cut(s)	684
BstMAI	GTCTC	4 cut(s)	714, 732, 780, 961
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstNI	CCWGG	2 cut(s)	59, 658
BstNSI	RCATGY	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	57, 656
BstUI	CGCG	1 cut(s)	684
BstV1I	GCAGC	1 cut(s)	990
BstV2I	GAAGAC	2 cut(s)	685, 1000
BstX2I	RGATCY	2 cut(s)	237, 1069
BstYI	RGATCY	2 cut(s)	237, 1069
BstZI	CGGCCG	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	131
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	4 cut(s)	439, 616, 1054, 1063
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	976
CaiI	CAGNNNCTG	1 cut(s)	58
CciI	TCATGA	2 cut(s)	222, 640
Cfr13I	GGNCC	3 cut(s)	16, 703, 805
CseI	GACGC	2 cut(s)	433, 690
CsiI	ACCWGGT	1 cut(s)	57
Csp6I	GTAC	5 cut(s)	12, 74, 100, 292, 355
CviAII	CATG	8 cut(s)	154, 211, 223, 428, 471, 623, 641, 809
CviQI	GTAC	5 cut(s)	12, 74, 100, 292, 355
DdeI	CTNAG	2 cut(s)	536, 818
DrdI	GACNNNNNNGTC	1 cut(s)	687
DseDI	GACNNNNNNGTC	1 cut(s)	687
EaeI	YGGCCR	1 cut(s)	129
EagI	CGGCCG	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	23, 570
EarI	CTCTTC	2 cut(s)	23, 570
Ecl136II	GAGCTC	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	3 cut(s)	16, 703, 805
Eco52I	CGGCCG	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	2 cut(s)	218, 1104
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	57, 656
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	8 cut(s)	157, 214, 226, 431, 474, 626, 644, 812
FaqI	GGGAC	6 cut(s)	55, 716, 794, 818, 887, 972
FatI	CATG	8 cut(s)	153, 210, 222, 427, 470, 622, 640, 808
FauI	CCCGC	2 cut(s)	57, 983
FblI	GTMKAC	2 cut(s)	144, 348
Fnu4HI	GCNGC	4 cut(s)	175, 187, 323, 979
FokI	GGATG	4 cut(s)	446, 623, 1050, 1061
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	4 cut(s)	175, 187, 323, 979
FspBI	CTAG	2 cut(s)	140, 359
GluI	GCNGC	4 cut(s)	175, 187, 323, 979
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	3 cut(s)	193, 245, 1067
HgaI	GACGC	2 cut(s)	433, 690
Hin1II	CATG	8 cut(s)	157, 214, 226, 431, 474, 626, 644, 812
HincII	GTYRAC	2 cut(s)	126, 145
HindII	GTYRAC	2 cut(s)	126, 145
HinfI	GANTC	2 cut(s)	508, 1095
HpaII	CCGG	3 cut(s)	193, 245, 1067
Hpy166II	GTNNAC	3 cut(s)	126, 145, 349
Hpy188I	TCNGA	4 cut(s)	237, 300, 384, 1100
Hpy8I	GTNNAC	3 cut(s)	126, 145, 349
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	5 cut(s)	100, 190, 244, 1030, 1039
HpyCH4III	ACNGT	3 cut(s)	11, 689, 762
HpyCH4IV	ACGT	2 cut(s)	98, 294
HpyCH4V	TGCA	2 cut(s)	311, 482
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpyF3I	CTNAG	2 cut(s)	536, 818
HpySE526I	ACGT	2 cut(s)	98, 294
Hsp92II	CATG	8 cut(s)	157, 214, 226, 431, 474, 626, 644, 812
Kpn2I	TCCGGA	1 cut(s)	1066
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	4 cut(s)	109, 157, 906, 1009
Lsp1109I	GCAGC	1 cut(s)	990
LweI	GCATC	2 cut(s)	219, 1112
MabI	ACCWGGT	1 cut(s)	57
MaeI	CTAG	2 cut(s)	140, 359
MaeII	ACGT	2 cut(s)	98, 294
MaeIII	GTNAC	2 cut(s)	473, 689
MflI	RGATCY	2 cut(s)	237, 1069
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	2 cut(s)	412, 492
MlyI	GAGTC	2 cut(s)	502, 1089
MroI	TCCGGA	1 cut(s)	1066
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	3 cut(s)	227, 432, 482
MspI	CCGG	3 cut(s)	193, 245, 1067
MspR9I	CCNGG	2 cut(s)	59, 658
MvaI	CCWGG	2 cut(s)	59, 658
MvnI	CGCG	1 cut(s)	684
MwoI	GCNNNNNNNGC	1 cut(s)	183
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	8 cut(s)	157, 214, 226, 431, 474, 626, 644, 812
NlaIV	GGNNCC	7 cut(s)	18, 178, 704, 806, 908, 1011, 1071
NmuCI	GTSAC	2 cut(s)	473, 689
NspI	RCATGY	1 cut(s)	431
PagI	TCATGA	2 cut(s)	222, 640
PciSI	GCTCTTC	1 cut(s)	23
Pfl23II	CGTACG	2 cut(s)	11, 73
PkrI	GCNGC	4 cut(s)	176, 188, 324, 980
PleI	GAGTC	2 cut(s)	502, 1089
PpsI	GAGTC	2 cut(s)	502, 1089
Ppu21I	YACGTR	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	57, 656
PspGI	CCWGG	2 cut(s)	57, 656
PspLI	CGTACG	2 cut(s)	11, 73
PspN4I	GGNNCC	7 cut(s)	18, 178, 704, 806, 908, 1011, 1071
PspPI	GGNCC	3 cut(s)	16, 703, 805
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	237, 1069
RsaI	GTAC	5 cut(s)	13, 75, 101, 293, 356
RsaNI	GTAC	5 cut(s)	12, 74, 100, 292, 355
RseI	CAYNNNNRTG	3 cut(s)	227, 432, 482
SacI	GAGCTC	1 cut(s)	162
SalI	GTCGAC	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	4 cut(s)	175, 187, 323, 979
Sau96I	GGNCC	3 cut(s)	16, 703, 805
SchI	GAGTC	2 cut(s)	502, 1089
ScrFI	CCNGG	2 cut(s)	59, 658
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	9 cut(s)	60, 101, 162, 182, 297, 360, 422, 441, 1000
SexAI	ACCWGGT	1 cut(s)	57
SfaNI	GCATC	2 cut(s)	219, 1112
SinI	GGWCC	3 cut(s)	16, 703, 805
SmiMI	CAYNNNNRTG	3 cut(s)	227, 432, 482
SpeI	ACTAGT	1 cut(s)	139
Sse9I	AATT	2 cut(s)	412, 492
SsiI	CCGC	5 cut(s)	50, 174, 186, 322, 976
SspMI	CTAG	2 cut(s)	140, 359
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	57, 656
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	3 cut(s)	11, 689, 762
TaiI	ACGT	2 cut(s)	101, 297
TaqI	TCGA	4 cut(s)	144, 162, 264, 513
TaqII	GACCGA	2 cut(s)	660, 720
TasI	AATT	2 cut(s)	412, 492
TauI	GCSGC	3 cut(s)	177, 189, 325
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	2 cut(s)	473, 689
TseI	GCWGC	1 cut(s)	978
Tsp45I	GTSAC	2 cut(s)	473, 689
TspDTI	ATGAA	7 cut(s)	199, 239, 259, 462, 516, 627, 840
TspGWI	ACGGA	3 cut(s)	29, 91, 771
TspRI	CASTG	1 cut(s)	119
VpaK11BI	GGWCC	3 cut(s)	16, 703, 805
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	431
XmiI	GTMKAC	2 cut(s)	144, 348
XspI	CTAG	2 cut(s)	140, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.