Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023316.1

Orthogroup ID

OG0006770

Physical Location & Seq

Genomic Coordinates Reverse (-)

399 .. 1192

Gene Structure 794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023316.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

atggcgaaccgcacggacccctcggcgaagaacataaggggcacgaacccccagaacctgatcgagaagatcgttcggacgaagatatacaacaacacctattggaaggagcagtgcttcggattgacggcggagacgctggtggacaaggccatggagctcgaccacatcggcgggacctttggaggtaaccgaaagcccacgccgttcatgtgcctcgtcatgaagatgcttcagatccaacccgagaaggaaatcgtcatcgagttcattaagaacgacgactacaaatatgttcgggtacttggtgcattttacttgcgtatcacaggcagcgatactgatgtctacagtacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

119

Amino Acids

13.67

Weight (kDa)

8.53

Isoelectric Point (pI)

35.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40650
fragaria_vesca	FvH4_6g07010
malus_domestica	MD04G1196900.v1.1 MD12G1209800.v1.1
prunus_persica	Prupe.1G236900_v2.0.a1
pyrus_communis	pycom04g17410 pycom12g19720
rosa_chinensis	RchiOBHm_Chr3g0456541
rosa_laevigata	RLG00000025296
rosa_multiflora	Rmu_sc0000161.1_g000061 Rmu_sc0017908.1_g000013 Rmu_sc0023316.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237330 Rroxscaffold_6G00422650
rosa_rugosa	Rorug03G0013800
rosa_samantha	Rh1BG185200 Rh1DG215000 Rh3AG074400 Rh3BG076100 Rh3CG075800 Rh3DG077900 Rh5AG404200 Rh5DG431400 Rh7AG053000 Rh7BG052600
rosa_wichuraiana	Rw3G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	3 cut(s)	10, 131, 174
AclWI	GGATC	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	2 cut(s)	303, 355
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	333
AspS9I	GGNCC	2 cut(s)	16, 177
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	2 cut(s)	16, 177
BaeGI	GKGCMC	1 cut(s)	44
BaeI	ACNNNNGTAYC	3 cut(s)	307, 330, 340
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	345
BceAI	ACGGC	2 cut(s)	144, 190
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	358
BfmI	CTRYAG	1 cut(s)	349
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme18I	GGWCC	2 cut(s)	16, 177
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	16, 177
BmiI	GGNNCC	2 cut(s)	18, 178
BmsI	GCATC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	21, 153
BseDI	CCNNGG	2 cut(s)	21, 153
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	345
BshFI	GGCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	245
BslFI	GGGAC	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	128
BsmBI	CGTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	44, 162
Bsp143I	GATC	3 cut(s)	60, 69, 237
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	3 cut(s)	10, 131, 174
BspANI	GGCC	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	2 cut(s)	18, 178
BspPI	GGATC	1 cut(s)	232
BssECI	CCNNGG	2 cut(s)	21, 153
BssMI	GATC	3 cut(s)	60, 69, 237
BssT1I	CCWWGG	1 cut(s)	153
Bst4CI	ACNGT	1 cut(s)	353
BstDSI	CCRYGG	1 cut(s)	153
BstEII	GGTNACC	1 cut(s)	188
BstKTI	GATC	3 cut(s)	63, 72, 240
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	3 cut(s)	60, 69, 237
BstPI	GGTNACC	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	349
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	153
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
CaiI	CAGNNNCTG	1 cut(s)	58
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	2 cut(s)	16, 177
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	2 cut(s)	302, 354
CviAII	CATG	3 cut(s)	154, 211, 223
CviJI	RGCY	3 cut(s)	152, 160, 199
CviKI_1	RGCY	3 cut(s)	152, 160, 199
CviQI	GTAC	2 cut(s)	302, 354
DpnI	GATC	3 cut(s)	62, 71, 239
DpnII	GATC	3 cut(s)	60, 69, 237
EciI	GGCGGA	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	2 cut(s)	16, 177
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	3 cut(s)	157, 214, 226
FaiI	YATR	6 cut(s)	35, 88, 155, 212, 224, 294
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	3 cut(s)	153, 210, 222
FauI	CCCGC	1 cut(s)	167
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	358
GluI	GCNGC	1 cut(s)	334
HaeIII	GGCC	1 cut(s)	152
HgaI	GACGC	1 cut(s)	145
Hin1II	CATG	3 cut(s)	157, 214, 226
Hpy166II	GTNNAC	2 cut(s)	145, 349
Hpy188I	TCNGA	3 cut(s)	78, 122, 237
Hpy188III	TCNNGA	2 cut(s)	64, 223
Hpy8I	GTNNAC	2 cut(s)	145, 349
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	2 cut(s)	100, 244
HpyCH4III	ACNGT	1 cut(s)	353
HpyCH4V	TGCA	1 cut(s)	311
Hsp92II	CATG	3 cut(s)	157, 214, 226
Kzo9I	GATC	3 cut(s)	60, 69, 237
LmnI	GCTCC	2 cut(s)	109, 157
LpnPI	CCDG	4 cut(s)	65, 71, 125, 315
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	358
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	3 cut(s)	62, 71, 239
MboI	GATC	3 cut(s)	60, 69, 237
MboII	GAAGA	4 cut(s)	40, 79, 94, 238
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	44, 162
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	3 cut(s)	31, 179, 227
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	3 cut(s)	60, 69, 237
NlaIII	CATG	3 cut(s)	157, 214, 226
NlaIV	GGNNCC	2 cut(s)	18, 178
PagI	TCATGA	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PkrI	GCNGC	1 cut(s)	335
PpuMI	RGGWCCY	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	18, 178
PspPI	GGNCC	2 cut(s)	16, 177
PspPPI	RGGWCCY	1 cut(s)	177
PsrI	GAACNNNNNNTAC	2 cut(s)	269, 301
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	2 cut(s)	303, 355
RsaNI	GTAC	2 cut(s)	302, 354
RseI	CAYNNNNRTG	1 cut(s)	227
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	3 cut(s)	60, 69, 237
Sau96I	GGNCC	2 cut(s)	16, 177
SduI	GDGCHC	2 cut(s)	44, 162
SetI	ASST	6 cut(s)	60, 101, 162, 182, 190, 359
SfaNI	GCATC	1 cut(s)	219
SfcI	CTRYAG	1 cut(s)	349
SinI	GGWCC	2 cut(s)	16, 177
SmiMI	CAYNNNNRTG	1 cut(s)	227
SsiI	CCGC	3 cut(s)	10, 131, 174
SspMI	CTAG	1 cut(s)	358
SstI	GAGCTC	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	353
TaqI	TCGA	3 cut(s)	63, 162, 264
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	119
TseI	GCWGC	1 cut(s)	333
TspDTI	ATGAA	3 cut(s)	199, 239, 259
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	16, 177
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.