Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006770

Physical Location & Seq

Genomic Coordinates Reverse (-)

19816023 .. 19818966

Gene Structure 2944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17410.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCGAACCGTACGGACCCGTCGGCGAAGAGCATAAGGGGGACGAACCCGCAGAACCTGGTGGAGAAGATCGTTCAAACGAAGATATACCAGAACACGTACTGGAAGGAGCAGTGCTTCGGGTTGACGGCCGAAACCCTAGTCGACAAAGCCATGGAGCTCGACCACATCGGCGGCACCTTCGGCGGTAACCGGAAGCCCACGCCTTTCATGTGCCTCGTCATGAAGATGCTTCAGATCCAGCCGGAGAAGGAGATCGTTATCGAGTTCATCAAAAATGACGATTACAAGTACGTCCGGATACTCGGTGCATTTTATTTGCGGCTTACGGGAACTGATACTGATGTCTACCAGTACCTAGAGCCTTTGTATAATGACTATCGGAAGTTGAGGAGGAAACTGCCCGATGGGAATTTTACGTTGACGCATGTGGATGAGGTTATTGATGAACTTCTCACAAAGGATTACTCATGTGACATTGCAATGCCACGAATTAAAAAAAGATGGACTCTTGAAGCAACTGGTTCATTGGAACTCAGGAAAAGTGCTTTGGAGGAGGACTTTGAGGAGGAGGAAGAGAAAGAGGAGAATGATCAAGTTGATGGAATGGATGAAGATGTCCATGATAGGGATTATTATCATGGCCGAAGCCCTGCCAGGGAAAGGGAAAGGGATAGAAGACGAGACAGTCACAGATACAGGGACCGAGATTATGACAGAGACCATGATAGAGATAGAGACTATGACAGGGAACGTGGACGTGGGCGTGATAGAGATAGGGACAGAGACAGGGATAGGGATCGGGACCATTATCGGCTAAGAGATGAAAAGGATTATGGTCGTGATAGGGATAGGGATCGGGACAGGCGAGAAAGGGATCGTGGCAGGAGGAGGAGCCGTTCAAGGAGCAGAAGTCGCAGTAGAGATCGTGATGGTGGGGATAGAGATCACAAGAGACACGCCCGCAGCATTAGTCCCAGAAGACCTGATCGTGAGGAGCCGAAGAAGAAGAAAGAAAAGAAGAAGGAGAAGAAGGATGATGGCACAGCCCATCCGGATCCAGAGATTGCTGAAGCAAACAGACTCCGAGCATCTCTTGGGTTGAAACCCCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

373

Amino Acids

44.86

Weight (kDa)

9.02

Isoelectric Point (pI)

51.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40650
fragaria_vesca	FvH4_6g07010
malus_domestica	MD04G1196900.v1.1 MD12G1209800.v1.1
prunus_persica	Prupe.1G236900_v2.0.a1
pyrus_communis	pycom04g17410 pycom12g19720
rosa_chinensis	RchiOBHm_Chr3g0456541
rosa_laevigata	RLG00000025296
rosa_multiflora	Rmu_sc0000161.1_g000061 Rmu_sc0017908.1_g000013 Rmu_sc0023316.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237330 Rroxscaffold_6G00422650
rosa_rugosa	Rorug03G0013800
rosa_samantha	Rh1BG185200 Rh1DG215000 Rh3AG074400 Rh3BG076100 Rh3CG075800 Rh3DG077900 Rh5AG404200 Rh5DG431400 Rh7AG053000 Rh7BG052600
rosa_wichuraiana	Rw3G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	687
AccB1I	GGYRCC	1 cut(s)	176
AccI	GTMKAC	2 cut(s)	144, 348
AccIII	TCCGGA	2 cut(s)	297, 1054
AciI	CCGC	5 cut(s)	50, 174, 186, 322, 964
AclWI	GGATC	6 cut(s)	232, 807, 864, 885, 1052, 1065
AcoI	YGGCCR	2 cut(s)	129, 643
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	2 cut(s)	218, 1092
AfaI	GTAC	4 cut(s)	13, 101, 293, 356
AfiI	CCNNNNNNNGG	3 cut(s)	628, 658, 663
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	4 cut(s)	77, 515, 903, 1105
AjiI	CACGTC	1 cut(s)	761
AjnI	CCWGG	2 cut(s)	57, 656
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AloI	GAACNNNNNNTCC	2 cut(s)	883, 915
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	5 cut(s)	678, 714, 732, 780, 949
AlwI	GGATC	6 cut(s)	232, 807, 864, 885, 1052, 1065
AlwNI	CAGNNNCTG	1 cut(s)	58
Aor13HI	TCCGGA	2 cut(s)	297, 1054
AoxI	GGCC	2 cut(s)	129, 643
ApeKI	GCWGC	1 cut(s)	966
ApoI	RAATTY	1 cut(s)	412
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AspS9I	GGNCC	3 cut(s)	16, 703, 805
AvaII	GGWCC	3 cut(s)	16, 703, 805
BaeI	ACNNNNGTAYC	2 cut(s)	330, 363
BamHI	GGATCC	1 cut(s)	1057
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	162
BbsI	GAAGAC	2 cut(s)	685, 988
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	978
BccI	CCATC	6 cut(s)	401, 498, 596, 926, 1034, 1059
BceAI	ACGGC	2 cut(s)	144, 882
BciT130I	CCWGG	2 cut(s)	59, 658
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	5 cut(s)	678, 714, 732, 780, 949
BfaI	CTAG	2 cut(s)	140, 359
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	3 cut(s)	175, 323, 967
BlsI	GCNGC	3 cut(s)	176, 324, 968
Bme1390I	CCNGG	2 cut(s)	59, 658
Bme18I	GGWCC	3 cut(s)	16, 703, 805
BmgBI	CACGTC	1 cut(s)	761
BmgT120I	GGNCC	3 cut(s)	16, 703, 805
BmiI	GGNNCC	7 cut(s)	18, 178, 704, 806, 896, 999, 1059
BmrFI	CCNGG	2 cut(s)	59, 658
BmsI	GCATC	2 cut(s)	219, 1100
BpiI	GAAGAC	2 cut(s)	685, 988
BsaAI	YACGTR	1 cut(s)	99
BsaBI	GATNNNNATC	5 cut(s)	260, 636, 798, 855, 945
BsaI	GGTCTC	1 cut(s)	714
BsaJI	CCNNGG	2 cut(s)	153, 657
BsaWI	WCCGGW	3 cut(s)	192, 297, 1054
BsaXI	ACNNNNNCTCC	4 cut(s)	883, 898, 913, 928
Bsc4I	CCNNNNNNNGG	3 cut(s)	628, 658, 663
Bse1I	ACTGG	3 cut(s)	107, 352, 526
Bse3DI	GCAATG	2 cut(s)	477, 489
Bse8I	GATNNNNATC	5 cut(s)	260, 636, 798, 855, 945
BseAI	TCCGGA	2 cut(s)	297, 1054
BseBI	CCWGG	2 cut(s)	59, 658
BseDI	CCNNGG	2 cut(s)	153, 657
BseGI	GGATG	4 cut(s)	439, 616, 1042, 1051
BseJI	GATNNNNATC	5 cut(s)	260, 636, 798, 855, 945
BseLI	CCNNNNNNNGG	3 cut(s)	628, 658, 663
BseMI	GCAATG	2 cut(s)	477, 489
BseMII	CTCAG	1 cut(s)	550
BseNI	ACTGG	3 cut(s)	107, 352, 526
BseRI	GAGGAG	8 cut(s)	406, 569, 581, 584, 599, 904, 907, 1010
BseX3I	CGGCCG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	978
Bsh1285I	CGRYCG	1 cut(s)	132
BshFI	GGCC	2 cut(s)	131, 645
BshNI	GGYRCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	132
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	4 cut(s)	193, 245, 298, 1055
BsiWI	CGTACG	1 cut(s)	11
BslFI	GGGAC	6 cut(s)	55, 716, 794, 818, 875, 960
BslI	CCNNNNNNNGG	3 cut(s)	628, 658, 663
BsmAI	GTCTC	5 cut(s)	678, 714, 732, 780, 949
BsmFI	GGGAC	6 cut(s)	55, 716, 794, 818, 875, 960
BsnI	GGCC	2 cut(s)	131, 645
Bso31I	GGTCTC	1 cut(s)	714
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp13I	TCCGGA	2 cut(s)	297, 1054
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	5 cut(s)	50, 174, 186, 322, 964
BspANI	GGCC	2 cut(s)	131, 645
BspCNI	CTCAG	1 cut(s)	549
BspEI	TCCGGA	2 cut(s)	297, 1054
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	7 cut(s)	18, 178, 704, 806, 896, 999, 1059
BspPI	GGATC	6 cut(s)	232, 807, 864, 885, 1052, 1065
BspQI	GCTCTTC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	714
BsrDI	GCAATG	2 cut(s)	477, 489
BsrI	ACTGG	3 cut(s)	107, 352, 526
BssECI	CCNNGG	2 cut(s)	153, 657
BssT1I	CCWWGG	1 cut(s)	153
Bst2UI	CCWGG	2 cut(s)	59, 658
Bst4CI	ACNGT	2 cut(s)	11, 689
Bst6I	CTCTTC	2 cut(s)	23, 570
BstBAI	YACGTR	1 cut(s)	99
BstC8I	GCNNGC	1 cut(s)	964
BstDEI	CTNAG	2 cut(s)	536, 818
BstDSI	CCRYGG	1 cut(s)	153
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	4 cut(s)	439, 616, 1042, 1051
BstMAI	GTCTC	5 cut(s)	678, 714, 732, 780, 949
BstMCI	CGRYCG	1 cut(s)	132
BstMWI	GCNNNNNNNGC	2 cut(s)	183, 915
BstNI	CCWGG	2 cut(s)	59, 658
BstNSI	RCATGY	1 cut(s)	431
BstPI	GGTNACC	1 cut(s)	188
BstSCI	CCNGG	2 cut(s)	57, 656
BstV1I	GCAGC	1 cut(s)	978
BstV2I	GAAGAC	2 cut(s)	685, 988
BstX2I	RGATCY	2 cut(s)	237, 1057
BstYI	RGATCY	2 cut(s)	237, 1057
BstZI	CGGCCG	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	131, 645
BtgI	CCRYGG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	761
BtsCI	GGATG	4 cut(s)	439, 616, 1042, 1051
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	964
CaiI	CAGNNNCTG	1 cut(s)	58
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	3 cut(s)	16, 703, 805
CseI	GACGC	1 cut(s)	433
CsiI	ACCWGGT	1 cut(s)	57
Csp6I	GTAC	4 cut(s)	12, 100, 292, 355
CviAII	CATG	8 cut(s)	154, 211, 223, 428, 471, 623, 641, 725
CviQI	GTAC	4 cut(s)	12, 100, 292, 355
DdeI	CTNAG	2 cut(s)	536, 818
DrdI	GACNNNNNNGTC	1 cut(s)	687
DseDI	GACNNNNNNGTC	1 cut(s)	687
EaeI	YGGCCR	2 cut(s)	129, 643
EagI	CGGCCG	1 cut(s)	129
Eam1104I	CTCTTC	2 cut(s)	23, 570
EarI	CTCTTC	2 cut(s)	23, 570
Ecl136II	GAGCTC	1 cut(s)	160
EclXI	CGGCCG	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	714
Eco47I	GGWCC	3 cut(s)	16, 703, 805
Eco52I	CGGCCG	1 cut(s)	129
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	2 cut(s)	218, 1092
Eco91I	GGTNACC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	160
EcoO65I	GGTNACC	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	57, 656
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	153
FaeI	CATG	8 cut(s)	157, 214, 226, 431, 474, 626, 644, 728
FaqI	GGGAC	6 cut(s)	55, 716, 794, 818, 875, 960
FatI	CATG	8 cut(s)	153, 210, 222, 427, 470, 622, 640, 724
FauI	CCCGC	2 cut(s)	57, 971
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	2 cut(s)	144, 348
Fnu4HI	GCNGC	3 cut(s)	175, 323, 967
FokI	GGATG	4 cut(s)	446, 623, 1038, 1049
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	175, 323, 967
FspBI	CTAG	2 cut(s)	140, 359
GluI	GCNGC	3 cut(s)	175, 323, 967
HaeIII	GGCC	2 cut(s)	131, 645
HapII	CCGG	4 cut(s)	193, 245, 298, 1055
HgaI	GACGC	1 cut(s)	433
Hin1II	CATG	8 cut(s)	157, 214, 226, 431, 474, 626, 644, 728
HincII	GTYRAC	3 cut(s)	126, 145, 423
HindII	GTYRAC	3 cut(s)	126, 145, 423
HinfI	GANTC	2 cut(s)	508, 1083
HpaII	CCGG	4 cut(s)	193, 245, 298, 1055
Hpy166II	GTNNAC	5 cut(s)	126, 145, 349, 423, 758
Hpy188I	TCNGA	3 cut(s)	237, 384, 1088
Hpy8I	GTNNAC	5 cut(s)	126, 145, 349, 423, 758
Hpy99I	CGWCG	1 cut(s)	25
HpyAV	CCTTC	5 cut(s)	100, 190, 244, 1018, 1027
HpyCH4III	ACNGT	2 cut(s)	11, 689
HpyCH4IV	ACGT	5 cut(s)	98, 294, 419, 754, 760
HpyCH4V	TGCA	2 cut(s)	311, 482
HpyF10VI	GCNNNNNNNGC	2 cut(s)	183, 915
HpyF3I	CTNAG	2 cut(s)	536, 818
HpySE526I	ACGT	5 cut(s)	98, 294, 419, 754, 760
Hsp92II	CATG	8 cut(s)	157, 214, 226, 431, 474, 626, 644, 728
Kpn2I	TCCGGA	2 cut(s)	297, 1054
Ksp22I	TGATCA	1 cut(s)	592
LguI	GCTCTTC	1 cut(s)	23
LmnI	GCTCC	5 cut(s)	109, 157, 894, 906, 997
Lsp1109I	GCAGC	1 cut(s)	978
LweI	GCATC	2 cut(s)	219, 1100
MabI	ACCWGGT	1 cut(s)	57
MaeI	CTAG	2 cut(s)	140, 359
MaeII	ACGT	5 cut(s)	98, 294, 419, 754, 760
MaeIII	GTNAC	3 cut(s)	188, 473, 689
MflI	RGATCY	2 cut(s)	237, 1057
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	2 cut(s)	412, 492
MlyI	GAGTC	2 cut(s)	502, 1077
MroI	TCCGGA	2 cut(s)	297, 1054
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	3 cut(s)	227, 432, 482
MspI	CCGG	4 cut(s)	193, 245, 298, 1055
MspR9I	CCNGG	2 cut(s)	59, 658
MvaI	CCWGG	2 cut(s)	59, 658
MwoI	GCNNNNNNNGC	2 cut(s)	183, 915
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	8 cut(s)	157, 214, 226, 431, 474, 626, 644, 728
NlaIV	GGNNCC	7 cut(s)	18, 178, 704, 806, 896, 999, 1059
NmuCI	GTSAC	2 cut(s)	473, 689
NspI	RCATGY	1 cut(s)	431
PagI	TCATGA	1 cut(s)	222
PciSI	GCTCTTC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	865
Pfl23II	CGTACG	1 cut(s)	11
PkrI	GCNGC	3 cut(s)	176, 324, 968
PleI	GAGTC	2 cut(s)	502, 1077
PpsI	GAGTC	2 cut(s)	502, 1077
Ppu21I	YACGTR	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	57, 656
PspEI	GGTNACC	1 cut(s)	188
PspGI	CCWGG	2 cut(s)	57, 656
PspLI	CGTACG	1 cut(s)	11
PspN4I	GGNNCC	7 cut(s)	18, 178, 704, 806, 896, 999, 1059
PspPI	GGNCC	3 cut(s)	16, 703, 805
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	237, 1057
RsaI	GTAC	4 cut(s)	13, 101, 293, 356
RsaNI	GTAC	4 cut(s)	12, 100, 292, 355
RseI	CAYNNNNRTG	3 cut(s)	227, 432, 482
SacI	GAGCTC	1 cut(s)	162
SalI	GTCGAC	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	3 cut(s)	175, 323, 967
Sau96I	GGNCC	3 cut(s)	16, 703, 805
SchI	GAGTC	2 cut(s)	502, 1077
ScrFI	CCNGG	2 cut(s)	59, 658
SduI	GDGCHC	1 cut(s)	162
SexAI	ACCWGGT	1 cut(s)	57
SfaNI	GCATC	2 cut(s)	219, 1100
SinI	GGWCC	3 cut(s)	16, 703, 805
SmiMI	CAYNNNNRTG	3 cut(s)	227, 432, 482
Sse9I	AATT	2 cut(s)	412, 492
SsiI	CCGC	5 cut(s)	50, 174, 186, 322, 964
SspMI	CTAG	2 cut(s)	140, 359
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	57, 656
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	2 cut(s)	11, 689
TaiI	ACGT	5 cut(s)	101, 297, 422, 757, 763
TaqI	TCGA	3 cut(s)	144, 162, 264
TaqII	GACCGA	1 cut(s)	720
TasI	AATT	2 cut(s)	412, 492
TauI	GCSGC	2 cut(s)	177, 325
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	2 cut(s)	473, 689
TseI	GCWGC	1 cut(s)	966
Tsp45I	GTSAC	2 cut(s)	473, 689
TspDTI	ATGAA	7 cut(s)	199, 239, 259, 462, 516, 627, 840
TspGWI	ACGGA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	119
VpaK11BI	GGWCC	3 cut(s)	16, 703, 805
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	1 cut(s)	431
XmiI	GTMKAC	2 cut(s)	144, 348
XspI	CTAG	2 cut(s)	140, 359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.