Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006770

Physical Location & Seq

Genomic Coordinates Reverse (-)

28871580 .. 28874764

Gene Structure 3185 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1209800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGCGAACCGCACGGACCCGTCGGCGAAGAACATAAGGGGAACGAACCCCCAGAATCTGGTGGAAAAGATCGTACGGACGAAGATATACCAGAACACGTACTGGAAGGAGCAGTGCTTCGGGTTGACTGCCGAAACCCTAGTCGACAAAGCCATGGAGCTCGACCACATCGGCGGCACCTTCGGGGGAAACCGCAAGCCCACGCCTTTCATGTGCCTCGTGATGAAGATGCTTCAGATCCAGCCGGAGAAGGAGATCGTCATCGAGTTCATCAAAAACGACGATTACAAGTACGTTCGGATACTTGGTGCATTTTATTTGCGGCTTACGGGAACTGATACTGATGCATACCAGTACCTAGAGCCTTTGTACAATGACTATCGGAAGTTGAGGAGGAAACTGCCTGATGGGAATTTTACCTTGACGCATGTGGATGAGGTTATTGATGAACTTCTCACAAAAGATTACTCATGTGACATTGCAATGCCACGAATTAAAAAAAGATGGACTCTCGAAGCAACTGGTTCATTGGAACTCAGGAAAAGTGCTTTGGAGGAGGACTTTGAGGAGGAGGAAGAGAAAGAGGAGAATGATCAAGTTGATGTAATGGATGAAGATGTCCATGATAGGGATTATTATCGTGGTCGAAGCCCTGCCAGGGAAAGAGATAGGGATAGAAGACGCGACAGTCACAGATACAGGGACCGAGATTATGACAGAGATTATGAAAGGGATAGAGATTATGACAGGGATCGTGGACGTGAAAGAGAGAGGGACAGAGACAGGGATAGGGATCGAGACCATTATCGGCTAAGAGACGAAAAGGATTATGGTCGTGATAGGGATAGGGACAGGGATAGGGATTGGGACAGGCGAGGGAGGGATCGTGGCAGGAGGAGGAGCCATTCAAGGAGCAGAAGTCGTAGTAGAGATCGTGATGGTGTGGATAGAGATCGCAGGAGACATGCCCGCAGCATTAGTCCCAGGAGACCTGATCGTGAGGAACCGAAGAAGAAGAAAGAAAAGAAGAAGGAGAAGAAGGATGATGGCACAGACCATCCGGATCCAGAGATTGCCGAAGCAAACAGACTCCGAGCATCTCTTGGGTTGAAACCCCTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

375

Amino Acids

45.38

Weight (kDa)

9.02

Isoelectric Point (pI)

50.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP38	PF03371	10 - 173	2e-66	PRP38 family
PRP38_assoc	PF12871	180 - 268	2.5e-07	Pre-mRNA-splicing factor 38-associated hydrophilic C-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40650
fragaria_vesca	FvH4_6g07010
malus_domestica	MD04G1196900.v1.1 MD12G1209800.v1.1
prunus_persica	Prupe.1G236900_v2.0.a1
pyrus_communis	pycom04g17410 pycom12g19720
rosa_chinensis	RchiOBHm_Chr3g0456541
rosa_laevigata	RLG00000025296
rosa_multiflora	Rmu_sc0000161.1_g000061 Rmu_sc0017908.1_g000013 Rmu_sc0023316.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237330 Rroxscaffold_6G00422650
rosa_rugosa	Rorug03G0013800
rosa_samantha	Rh1BG185200 Rh1DG215000 Rh3AG074400 Rh3BG076100 Rh3CG075800 Rh3DG077900 Rh5AG404200 Rh5DG431400 Rh7AG053000 Rh7BG052600
rosa_wichuraiana	Rw3G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	687
AccB1I	GGYRCC	1 cut(s)	176
AccB7I	CCANNNNNTGG	1 cut(s)	58
AccI	GTMKAC	1 cut(s)	144
AccII	CGCG	1 cut(s)	684
AccIII	TCCGGA	1 cut(s)	1060
AciI	CCGC	5 cut(s)	10, 174, 193, 322, 970
AclWI	GGATC	6 cut(s)	232, 759, 801, 891, 1058, 1071
AcsI	RAATTY	1 cut(s)	412
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	5 cut(s)	75, 101, 293, 356, 371
AfiI	CCNNNNNNNGG	3 cut(s)	58, 628, 658
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	2 cut(s)	909, 1111
AjiI	CACGTC	1 cut(s)	761
AjnI	CCWGG	2 cut(s)	656, 983
AjuI	GAANNNNNNNTTGG	2 cut(s)	533, 565
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	5 cut(s)	774, 792, 810, 955, 982
AlwI	GGATC	6 cut(s)	232, 759, 801, 891, 1058, 1071
AlwNI	CAGNNNCTG	1 cut(s)	58
Aor13HI	TCCGGA	1 cut(s)	1060
ApeKI	GCWGC	1 cut(s)	972
ApoI	RAATTY	1 cut(s)	412
ArsI	GACNNNNNNTTYG	2 cut(s)	126, 158
AspS9I	GGNCC	2 cut(s)	16, 703
AvaII	GGWCC	2 cut(s)	16, 703
BamHI	GGATCC	1 cut(s)	1063
BanI	GGYRCC	1 cut(s)	176
BanII	GRGCYC	1 cut(s)	162
BauI	CACGAG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	685
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	984
BccI	CCATC	5 cut(s)	401, 498, 932, 1040, 1065
BciT130I	CCWGG	2 cut(s)	658, 985
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	5 cut(s)	774, 792, 810, 955, 982
BfaI	CTAG	2 cut(s)	140, 359
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	3 cut(s)	175, 323, 973
BlsI	GCNGC	3 cut(s)	176, 324, 974
Bme1390I	CCNGG	2 cut(s)	658, 985
Bme18I	GGWCC	2 cut(s)	16, 703
BmgBI	CACGTC	1 cut(s)	761
BmgT120I	GGNCC	2 cut(s)	16, 703
BmiI	GGNNCC	6 cut(s)	18, 178, 704, 902, 1005, 1065
BmrFI	CCNGG	2 cut(s)	658, 985
BmsI	GCATC	3 cut(s)	219, 334, 1106
BpiI	GAAGAC	1 cut(s)	685
BsaAI	YACGTR	1 cut(s)	99
BsaBI	GATNNNNATC	4 cut(s)	260, 636, 792, 951
BsaI	GGTCTC	2 cut(s)	792, 982
BsaJI	CCNNGG	3 cut(s)	153, 657, 983
BsaWI	WCCGGW	1 cut(s)	1060
BsaXI	ACNNNNNCTCC	4 cut(s)	871, 901, 904, 934
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 628, 658
Bse1I	ACTGG	3 cut(s)	107, 352, 526
Bse3DI	GCAATG	2 cut(s)	477, 489
Bse8I	GATNNNNATC	4 cut(s)	260, 636, 792, 951
BseAI	TCCGGA	1 cut(s)	1060
BseBI	CCWGG	2 cut(s)	658, 985
BseDI	CCNNGG	3 cut(s)	153, 657, 983
BseGI	GGATG	4 cut(s)	439, 616, 1048, 1057
BseJI	GATNNNNATC	4 cut(s)	260, 636, 792, 951
BseLI	CCNNNNNNNGG	3 cut(s)	58, 628, 658
BseMI	GCAATG	2 cut(s)	477, 489
BseMII	CTCAG	1 cut(s)	550
BseNI	ACTGG	3 cut(s)	107, 352, 526
BseRI	GAGGAG	7 cut(s)	406, 569, 581, 584, 599, 910, 913
BseXI	GCAGC	1 cut(s)	984
Bsh1236I	CGCG	1 cut(s)	684
BshNI	GGYRCC	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	2 cut(s)	245, 1061
BsiWI	CGTACG	1 cut(s)	73
BslFI	GGGAC	5 cut(s)	716, 788, 863, 881, 966
BslI	CCNNNNNNNGG	3 cut(s)	58, 628, 658
BsmAI	GTCTC	5 cut(s)	774, 792, 810, 955, 982
BsmBI	CGTCTC	1 cut(s)	810
BsmFI	GGGAC	5 cut(s)	716, 788, 863, 881, 966
Bso31I	GGTCTC	2 cut(s)	792, 982
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp13I	TCCGGA	1 cut(s)	1060
Bsp1407I	TGTACA	1 cut(s)	369
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	5 cut(s)	10, 174, 193, 322, 970
BspCNI	CTCAG	1 cut(s)	549
BspEI	TCCGGA	1 cut(s)	1060
BspFNI	CGCG	1 cut(s)	684
BspLI	GGNNCC	6 cut(s)	18, 178, 704, 902, 1005, 1065
BspPI	GGATC	6 cut(s)	232, 759, 801, 891, 1058, 1071
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	2 cut(s)	792, 982
BsrDI	GCAATG	2 cut(s)	477, 489
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	3 cut(s)	107, 352, 526
BssECI	CCNNGG	3 cut(s)	153, 657, 983
BssSI	CACGAG	1 cut(s)	218
BssT1I	CCWWGG	1 cut(s)	153
Bst2BI	CACGAG	1 cut(s)	218
Bst2UI	CCWGG	2 cut(s)	658, 985
Bst4CI	ACNGT	1 cut(s)	689
Bst6I	CTCTTC	1 cut(s)	570
BstAUI	TGTACA	1 cut(s)	369
BstBAI	YACGTR	1 cut(s)	99
BstC8I	GCNNGC	2 cut(s)	197, 970
BstDEI	CTNAG	2 cut(s)	536, 812
BstDSI	CCRYGG	1 cut(s)	153
BstF5I	GGATG	4 cut(s)	439, 616, 1048, 1057
BstFNI	CGCG	1 cut(s)	684
BstMAI	GTCTC	5 cut(s)	774, 792, 810, 955, 982
BstNI	CCWGG	2 cut(s)	658, 985
BstNSI	RCATGY	2 cut(s)	431, 968
BstSCI	CCNGG	2 cut(s)	656, 983
BstUI	CGCG	1 cut(s)	684
BstV1I	GCAGC	1 cut(s)	984
BstV2I	GAAGAC	1 cut(s)	685
BstX2I	RGATCY	2 cut(s)	237, 1063
BstYI	RGATCY	2 cut(s)	237, 1063
BsuI	GTATCC	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	761
BtsCI	GGATG	4 cut(s)	439, 616, 1048, 1057
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	1 cut(s)	119
Cac8I	GCNNGC	2 cut(s)	197, 970
CaiI	CAGNNNCTG	1 cut(s)	58
Cfr13I	GGNCC	2 cut(s)	16, 703
CseI	GACGC	2 cut(s)	433, 690
Csp6I	GTAC	5 cut(s)	74, 100, 292, 355, 370
CviAII	CATG	6 cut(s)	154, 211, 428, 471, 623, 965
CviJI	RGCY	9 cut(s)	152, 160, 199, 244, 325, 364, 651, 811, 903
CviKI_1	RGCY	9 cut(s)	152, 160, 199, 244, 325, 364, 651, 811, 903
CviQI	GTAC	5 cut(s)	74, 100, 292, 355, 370
DdeI	CTNAG	2 cut(s)	536, 812
DrdI	GACNNNNNNGTC	1 cut(s)	687
DseDI	GACNNNNNNGTC	1 cut(s)	687
Eam1104I	CTCTTC	1 cut(s)	570
EarI	CTCTTC	1 cut(s)	570
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	162
Eco31I	GGTCTC	2 cut(s)	792, 982
Eco47I	GGWCC	2 cut(s)	16, 703
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	2 cut(s)	656, 983
EcoT14I	CCWWGG	1 cut(s)	153
EcoT22I	ATGCAT	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	810
FaeI	CATG	6 cut(s)	157, 214, 431, 474, 626, 968
FaqI	GGGAC	5 cut(s)	716, 788, 863, 881, 966
FatI	CATG	6 cut(s)	153, 210, 427, 470, 622, 964
FauI	CCCGC	1 cut(s)	977
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	3 cut(s)	175, 323, 973
FokI	GGATG	4 cut(s)	446, 623, 1044, 1055
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	3 cut(s)	175, 323, 973
FspBI	CTAG	2 cut(s)	140, 359
GluI	GCNGC	3 cut(s)	175, 323, 973
HapII	CCGG	2 cut(s)	245, 1061
HgaI	GACGC	2 cut(s)	433, 690
Hin1II	CATG	6 cut(s)	157, 214, 431, 474, 626, 968
HincII	GTYRAC	2 cut(s)	126, 145
HindII	GTYRAC	2 cut(s)	126, 145
HinfI	GANTC	3 cut(s)	55, 508, 1089
HpaII	CCGG	2 cut(s)	245, 1061
Hpy166II	GTNNAC	3 cut(s)	126, 145, 758
Hpy188I	TCNGA	4 cut(s)	237, 300, 384, 1094
Hpy188III	TCNNGA	9 cut(s)	220, 512, 538, 797, 836, 935, 998, 1061, 1067
Hpy8I	GTNNAC	3 cut(s)	126, 145, 758
Hpy99I	CGWCG	2 cut(s)	25, 284
HpyAV	CCTTC	5 cut(s)	100, 190, 244, 1024, 1033
HpyCH4III	ACNGT	1 cut(s)	689
HpyCH4IV	ACGT	3 cut(s)	98, 294, 760
HpyCH4V	TGCA	3 cut(s)	311, 347, 482
HpyF3I	CTNAG	2 cut(s)	536, 812
HpySE526I	ACGT	3 cut(s)	98, 294, 760
Hsp92II	CATG	6 cut(s)	157, 214, 431, 474, 626, 968
Kpn2I	TCCGGA	1 cut(s)	1060
Ksp22I	TGATCA	1 cut(s)	592
LmnI	GCTCC	4 cut(s)	109, 157, 900, 912
Lsp1109I	GCAGC	1 cut(s)	984
LweI	GCATC	3 cut(s)	219, 334, 1106
MaeI	CTAG	2 cut(s)	140, 359
MaeII	ACGT	3 cut(s)	98, 294, 760
MaeIII	GTNAC	2 cut(s)	473, 689
MflI	RGATCY	2 cut(s)	237, 1063
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	2 cut(s)	412, 492
MlyI	GAGTC	2 cut(s)	502, 1083
Mph1103I	ATGCAT	1 cut(s)	349
MroI	TCCGGA	1 cut(s)	1060
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	2 cut(s)	432, 482
MspI	CCGG	2 cut(s)	245, 1061
MspR9I	CCNGG	2 cut(s)	658, 985
MvaI	CCWGG	2 cut(s)	658, 985
MvnI	CGCG	1 cut(s)	684
NcoI	CCATGG	1 cut(s)	153
NlaIII	CATG	6 cut(s)	157, 214, 431, 474, 626, 968
NlaIV	GGNNCC	6 cut(s)	18, 178, 704, 902, 1005, 1065
NmuCI	GTSAC	2 cut(s)	473, 689
NsiI	ATGCAT	1 cut(s)	349
NspI	RCATGY	2 cut(s)	431, 968
PfeI	GAWTC	1 cut(s)	55
Pfl23II	CGTACG	1 cut(s)	73
PflMI	CCANNNNNTGG	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	176, 324, 974
PleI	GAGTC	2 cut(s)	502, 1083
PpsI	GAGTC	2 cut(s)	502, 1083
Ppu21I	YACGTR	1 cut(s)	99
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	2 cut(s)	656, 983
PspGI	CCWGG	2 cut(s)	656, 983
PspLI	CGTACG	1 cut(s)	73
PspN4I	GGNNCC	6 cut(s)	18, 178, 704, 902, 1005, 1065
PspPI	GGNCC	2 cut(s)	16, 703
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	2 cut(s)	237, 1063
RsaI	GTAC	5 cut(s)	75, 101, 293, 356, 371
RsaNI	GTAC	5 cut(s)	74, 100, 292, 355, 370
RseI	CAYNNNNRTG	2 cut(s)	432, 482
SacI	GAGCTC	1 cut(s)	162
SalI	GTCGAC	1 cut(s)	143
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	3 cut(s)	175, 323, 973
Sau96I	GGNCC	2 cut(s)	16, 703
SchI	GAGTC	2 cut(s)	502, 1083
ScrFI	CCNGG	2 cut(s)	658, 985
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	9 cut(s)	101, 162, 182, 297, 360, 422, 441, 763, 994
SfaNI	GCATC	3 cut(s)	219, 334, 1106
SinI	GGWCC	2 cut(s)	16, 703
SmiMI	CAYNNNNRTG	2 cut(s)	432, 482
Sse9I	AATT	2 cut(s)	412, 492
SsiI	CCGC	5 cut(s)	10, 174, 193, 322, 970
SspMI	CTAG	2 cut(s)	140, 359
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	656, 983
StyI	CCWWGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	689
TaiI	ACGT	3 cut(s)	101, 297, 763
TaqI	TCGA	6 cut(s)	144, 162, 264, 513, 646, 796
TaqII	GACCGA	1 cut(s)	720
TasI	AATT	2 cut(s)	412, 492
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	2 cut(s)	177, 325
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	119
TseFI	GTSAC	2 cut(s)	473, 689
TseI	GCWGC	1 cut(s)	972
Tsp45I	GTSAC	2 cut(s)	473, 689
TspDTI	ATGAA	7 cut(s)	199, 239, 259, 462, 516, 627, 741
TspGWI	ACGGA	2 cut(s)	29, 91
TspRI	CASTG	1 cut(s)	119
Van91I	CCANNNNNTGG	1 cut(s)	58
VpaK11BI	GGWCC	2 cut(s)	16, 703
XapI	RAATTY	1 cut(s)	412
XceI	RCATGY	2 cut(s)	431, 968
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	140, 359
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.