Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000161.1

Orthogroup ID

OG0006770

Physical Location & Seq

Genomic Coordinates Reverse (-)

246023 .. 249464

Gene Structure 3442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000161.1_g000061.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atggacacaaatagacaacaacacctattggaaggagcagtgcttcggtttggggcgaagactccagtggacaaggccatggagctcgaccacatcggtaggacctttgcaggtaatcgaaaactcataccattcatgtgcttcgttatgaagttgctacaaatccgaccagaaaaggaaatggtcatcgagttcattaagaacgacgactgcaaatttggagcccctgcacatcagattgtcgacaactccttcgatgtagcccgcgccgctgctgcctggagcatatttggatcagaactaacctcgcccatgccaccagtcacgtctcttgcatcgattcccataactgcccttgcctccaagaagttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

124

Amino Acids

13.75

Weight (kDa)

8.66

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40650
fragaria_vesca	FvH4_6g07010
malus_domestica	MD04G1196900.v1.1 MD12G1209800.v1.1
prunus_persica	Prupe.1G236900_v2.0.a1
pyrus_communis	pycom04g17410 pycom12g19720
rosa_chinensis	RchiOBHm_Chr3g0456541
rosa_laevigata	RLG00000025296
rosa_multiflora	Rmu_sc0000161.1_g000061 Rmu_sc0017908.1_g000013 Rmu_sc0023316.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237330 Rroxscaffold_6G00422650
rosa_rugosa	Rorug03G0013800
rosa_samantha	Rh1BG185200 Rh1DG215000 Rh3AG074400 Rh3BG076100 Rh3CG075800 Rh3DG077900 Rh5AG404200 Rh5DG431400 Rh7AG053000 Rh7BG052600
rosa_wichuraiana	Rw3G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	101
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	267
AciI	CCGC	2 cut(s)	265, 270
AclWI	GGATC	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	215
AjiI	CACGTC	1 cut(s)	327
AjnI	CCWGG	1 cut(s)	278
AluBI	AGCT	1 cut(s)	85
AluI	AGCT	1 cut(s)	85
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	333
AlwI	GGATC	1 cut(s)	301
AoxI	GGCC	1 cut(s)	75
ApeKI	GCWGC	2 cut(s)	272, 275
ApoI	RAATTY	1 cut(s)	215
ArsI	GACNNNNNNTTYG	4 cut(s)	200, 232, 236, 268
AspLEI	GCGC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	102
BanII	GRGCYC	2 cut(s)	87, 226
BbsI	GAAGAC	1 cut(s)	65
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	2 cut(s)	259, 262
BciT130I	CCWGG	1 cut(s)	280
BcoDI	GTCTC	1 cut(s)	333
BfuAI	ACCTGC	1 cut(s)	101
BisI	GCNGC	3 cut(s)	270, 273, 276
BlsI	GCNGC	3 cut(s)	271, 274, 277
Bme1390I	CCNGG	1 cut(s)	280
Bme18I	GGWCC	1 cut(s)	102
BmgBI	CACGTC	1 cut(s)	327
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	223
BmrFI	CCNGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	65
BpmI	CTGGAG	2 cut(s)	48, 301
Bsa29I	ATCGAT	1 cut(s)	338
BsaJI	CCNNGG	1 cut(s)	78
Bse1I	ACTGG	2 cut(s)	65, 320
BseBI	CCWGG	1 cut(s)	280
BseCI	ATCGAT	1 cut(s)	338
BseDI	CCNNGG	1 cut(s)	78
BseNI	ACTGG	2 cut(s)	65, 320
BseXI	GCAGC	2 cut(s)	259, 262
BsgI	GTGCAG	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	267
BshFI	GGCC	1 cut(s)	77
BshVI	ATCGAT	1 cut(s)	338
BsiHKAI	GWGCWC	1 cut(s)	87
BsmAI	GTCTC	1 cut(s)	333
BsmBI	CGTCTC	1 cut(s)	333
BsnI	GGCC	1 cut(s)	77
Bsp1286I	GDGCHC	2 cut(s)	87, 226
Bsp143I	GATC	1 cut(s)	293
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	2 cut(s)	265, 270
BspANI	GGCC	1 cut(s)	77
BspDI	ATCGAT	1 cut(s)	338
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	1 cut(s)	223
BspMI	ACCTGC	1 cut(s)	101
BspPI	GGATC	1 cut(s)	301
BsrI	ACTGG	2 cut(s)	65, 320
BssECI	CCNNGG	1 cut(s)	78
BssMI	GATC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	265
BstDSI	CCRYGG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	269
BstKTI	GATC	1 cut(s)	296
BstMAI	GTCTC	1 cut(s)	333
BstMBI	GATC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 275
BstNI	CCWGG	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	278
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	259, 262
BstV2I	GAAGAC	1 cut(s)	65
Bsu15I	ATCGAT	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	77
BsuTUI	ATCGAT	1 cut(s)	338
BtgI	CCRYGG	1 cut(s)	78
BtrI	CACGTC	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	45
BtsIMutI	CAGTG	2 cut(s)	45, 72
BveI	ACCTGC	1 cut(s)	101
Cac8I	GCNNGC	1 cut(s)	265
CfoI	GCGC	1 cut(s)	269
Cfr13I	GGNCC	1 cut(s)	102
ClaI	ATCGAT	1 cut(s)	338
CviAII	CATG	3 cut(s)	79, 136, 313
CviJI	RGCY	4 cut(s)	77, 85, 224, 263
CviKI_1	RGCY	4 cut(s)	77, 85, 224, 263
DpnI	GATC	1 cut(s)	295
DpnII	GATC	1 cut(s)	293
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	2 cut(s)	87, 226
Eco47I	GGWCC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	85
EcoICRI	GAGCTC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	102
EcoRII	CCWGG	1 cut(s)	278
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	2 cut(s)	87, 226
ErhI	CCWWGG	1 cut(s)	78
Esp3I	CGTCTC	1 cut(s)	333
FaeI	CATG	3 cut(s)	82, 139, 316
FaiI	YATR	7 cut(s)	80, 128, 137, 149, 287, 314, 347
FatI	CATG	3 cut(s)	78, 135, 312
FauI	CCCGC	1 cut(s)	272
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	3 cut(s)	270, 273, 276
FriOI	GRGCYC	2 cut(s)	87, 226
Fsp4HI	GCNGC	3 cut(s)	270, 273, 276
GlaI	GCGC	1 cut(s)	268
GluI	GCNGC	3 cut(s)	270, 273, 276
GsuI	CTGGAG	2 cut(s)	48, 301
HaeIII	GGCC	1 cut(s)	77
HhaI	GCGC	1 cut(s)	269
Hin1II	CATG	3 cut(s)	82, 139, 316
Hin6I	GCGC	1 cut(s)	267
HinP1I	GCGC	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	2 cut(s)	61, 340
Hpy166II	GTNNAC	2 cut(s)	70, 244
Hpy188I	TCNGA	3 cut(s)	167, 237, 298
Hpy8I	GTNNAC	2 cut(s)	70, 244
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	26, 262
HpyCH4IV	ACGT	1 cut(s)	326
HpyCH4V	TGCA	4 cut(s)	110, 213, 230, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 275
HpySE526I	ACGT	1 cut(s)	326
Hsp92II	CATG	3 cut(s)	82, 139, 316
HspAI	GCGC	1 cut(s)	267
Kzo9I	GATC	1 cut(s)	293
LmnI	GCTCC	4 cut(s)	35, 82, 221, 282
LpnPI	CCDG	7 cut(s)	78, 96, 183, 240, 265, 292, 333
Lsp1109I	GCAGC	2 cut(s)	259, 262
LweI	GCATC	1 cut(s)	344
MaeII	ACGT	1 cut(s)	326
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	1 cut(s)	295
MboI	GATC	1 cut(s)	293
MboII	GAAGA	1 cut(s)	70
MhlI	GDGCHC	2 cut(s)	87, 226
MluCI	AATT	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	55
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	2 cut(s)	316, 370
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	136
MspA1I	CMGCKG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	280
MvaI	CCWGG	1 cut(s)	280
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	269, 275
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	293
NlaIII	CATG	3 cut(s)	82, 139, 316
NlaIV	GGNNCC	1 cut(s)	223
NmuCI	GTSAC	1 cut(s)	322
PfeI	GAWTC	1 cut(s)	340
PkrI	GCNGC	3 cut(s)	271, 274, 277
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
PpuMI	RGGWCCY	1 cut(s)	102
Psp124BI	GAGCTC	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	102
Psp6I	CCWGG	1 cut(s)	278
PspGI	CCWGG	1 cut(s)	278
PspN4I	GGNNCC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	102
PspPPI	RGGWCCY	1 cut(s)	102
RseI	CAYNNNNRTG	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	87
SalI	GTCGAC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	3 cut(s)	270, 273, 276
Sau3AI	GATC	1 cut(s)	293
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	280
SduI	GDGCHC	2 cut(s)	87, 226
SetI	ASST	6 cut(s)	27, 87, 107, 115, 308, 329
SfaNI	GCATC	1 cut(s)	344
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	136
Sse9I	AATT	1 cut(s)	215
SsiI	CCGC	2 cut(s)	265, 270
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	278
StyI	CCWWGG	1 cut(s)	78
TaiI	ACGT	1 cut(s)	329
TaqI	TCGA	6 cut(s)	87, 118, 189, 243, 255, 338
TasI	AATT	1 cut(s)	215
TauI	GCSGC	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	2 cut(s)	45, 72
TseFI	GTSAC	1 cut(s)	322
TseI	GCWGC	2 cut(s)	272, 275
Tsp45I	GTSAC	1 cut(s)	322
TspDTI	ATGAA	3 cut(s)	124, 164, 184
TspRI	CASTG	2 cut(s)	45, 72
VpaK11BI	GGWCC	1 cut(s)	102
XapI	RAATTY	1 cut(s)	215
XmiI	GTMKAC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.