Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006770

Physical Location & Seq

Genomic Coordinates Forward (+)

42128921 .. 42140032

Gene Structure 11112 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG215000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGGAGCTCGACCACATCGGCGGGATATTTGGAGGTAATCGAAAACCCACACCATTCATGTGCCTCGTTATGAAGGTGCTTCAGATCCAATCGGAGAAGGAAATCGTCATCGAGTTCATTAAGAACGACGACTACAAGTCTTTGGTTATGGAAGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

52

Amino Acids

5.96

Weight (kDa)

5.12

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP38	PF03371	2 - 47	8.8e-13	PRP38 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40650
fragaria_vesca	FvH4_6g07010
malus_domestica	MD04G1196900.v1.1 MD12G1209800.v1.1
prunus_persica	Prupe.1G236900_v2.0.a1
pyrus_communis	pycom04g17410 pycom12g19720
rosa_chinensis	RchiOBHm_Chr3g0456541
rosa_laevigata	RLG00000025296
rosa_multiflora	Rmu_sc0000161.1_g000061 Rmu_sc0017908.1_g000013 Rmu_sc0023316.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237330 Rroxscaffold_6G00422650
rosa_rugosa	Rorug03G0013800
rosa_samantha	Rh1BG185200 Rh1DG215000 Rh3AG074400 Rh3BG076100 Rh3CG075800 Rh3DG077900 Rh5AG404200 Rh5DG431400 Rh7AG053000 Rh7BG052600
rosa_wichuraiana	Rw3G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	65
AhdI	GACNNNNNGTC	1 cut(s)	136
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw21I	GWGCWC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	79
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BmeRI	GACNNNNNGTC	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	9
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	84
BspACI	CCGC	1 cut(s)	21
BspPI	GGATC	1 cut(s)	79
BssMI	GATC	1 cut(s)	84
BstKTI	GATC	1 cut(s)	87
BstMBI	GATC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	1 cut(s)	7
CviKI_1	RGCY	1 cut(s)	7
DpnI	GATC	1 cut(s)	86
DpnII	GATC	1 cut(s)	84
DriI	GACNNNNNGTC	1 cut(s)	136
Eam1105I	GACNNNNNGTC	1 cut(s)	136
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	65
EcoICRI	GAGCTC	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	61
FaiI	YATR	3 cut(s)	59, 71, 149
FatI	CATG	1 cut(s)	57
FauI	CCCGC	1 cut(s)	14
FriOI	GRGCYC	1 cut(s)	9
Hin1II	CATG	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	84, 94
Hpy99I	CGWCG	1 cut(s)	131
HpyAV	CCTTC	2 cut(s)	67, 91
Hsp92II	CATG	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	84
LmnI	GCTCC	1 cut(s)	4
MalI	GATC	1 cut(s)	86
MboI	GATC	1 cut(s)	84
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	1 cut(s)	9
MnlI	CCTC	2 cut(s)	26, 74
MseI	TTAA	1 cut(s)	120
MslI	CAYNNNNRTG	1 cut(s)	58
NdeII	GATC	1 cut(s)	84
NlaIII	CATG	1 cut(s)	61
Psp124BI	GAGCTC	1 cut(s)	9
PsrI	GAACNNNNNNTAC	2 cut(s)	116, 148
PsuI	RGATCY	1 cut(s)	84
RseI	CAYNNNNRTG	1 cut(s)	58
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	3 cut(s)	9, 37, 78
SgeI	CNNG	6 cut(s)	20, 34, 70, 77, 124, 148
SmiMI	CAYNNNNRTG	1 cut(s)	58
SsiI	CCGC	1 cut(s)	21
SstI	GAGCTC	1 cut(s)	9
TaqI	TCGA	3 cut(s)	9, 40, 111
Tru1I	TTAA	1 cut(s)	120
Tru9I	TTAA	1 cut(s)	120
TspDTI	ATGAA	3 cut(s)	46, 86, 106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.