Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017908.1

Orthogroup ID

OG0006770

Physical Location & Seq

Genomic Coordinates Reverse (-)

45015 .. 46063

Gene Structure 1049 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017908.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggcgaaccgcactgacccctcggcgaagaacataaggggcacgaacccccagaacctgatcgagaagatcgtacggacgaagatatacaacaacacctattggaaggagcagtgcttcggattgacggcggagacgctggtggacaaggccatggagctcgaccacatcggcgggacctttggaggtaaccgaaagcccacgccgttcatgtgcctcgtcatgaagatgcttcagatccaacccgagaaggaaatcgtcatcgagttcattaagaacgacgactacaaatatgttcgggtacttggtgcattttacttgcgtatcacaggcagcgatactgatgtctaccagtacctagagcctctgtacaatgactatcggaagttgagaagtaaattggctgatggacgtttctcgttgactcatgtggatgagcttattgatgaacttctgacaaaggactactcatgcgacattgccatgccacgaatcaagaaaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

168

Amino Acids

19.6

Weight (kDa)

8.66

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40650
fragaria_vesca	FvH4_6g07010
malus_domestica	MD04G1196900.v1.1 MD12G1209800.v1.1
prunus_persica	Prupe.1G236900_v2.0.a1
pyrus_communis	pycom04g17410 pycom12g19720
rosa_chinensis	RchiOBHm_Chr3g0456541
rosa_laevigata	RLG00000025296
rosa_multiflora	Rmu_sc0000161.1_g000061 Rmu_sc0017908.1_g000013 Rmu_sc0023316.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237330 Rroxscaffold_6G00422650
rosa_rugosa	Rorug03G0013800
rosa_samantha	Rh1BG185200 Rh1DG215000 Rh3AG074400 Rh3BG076100 Rh3CG075800 Rh3DG077900 Rh5AG404200 Rh5DG431400 Rh7AG053000 Rh7BG052600
rosa_wichuraiana	Rw3G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	348
AciI	CCGC	3 cut(s)	10, 131, 174
AclWI	GGATC	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	4 cut(s)	75, 303, 356, 371
AluBI	AGCT	2 cut(s)	160, 439
AluI	AGCT	2 cut(s)	160, 439
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	232
AlwNI	CAGNNNCTG	1 cut(s)	58
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	333
AspS9I	GGNCC	1 cut(s)	177
AvaI	CYCGRG	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	44
BaeI	ACNNNNGTAYC	4 cut(s)	307, 330, 340, 363
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	162
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	2 cut(s)	144, 190
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	359
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	177
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	177
BmiI	GGNNCC	1 cut(s)	178
BmsI	GCATC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	21, 153
Bse1I	ACTGG	1 cut(s)	352
Bse3DI	GCAATG	1 cut(s)	477
BseDI	CCNNGG	2 cut(s)	21, 153
BseGI	GGATG	1 cut(s)	439
BseMI	GCAATG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	44
BseXI	GCAGC	1 cut(s)	345
BshFI	GGCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	162
BsiHKCI	CYCGRG	1 cut(s)	245
BsiWI	CGTACG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	128
BsmBI	CGTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	44, 162
Bsp1407I	TGTACA	1 cut(s)	369
Bsp143I	GATC	3 cut(s)	60, 69, 237
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	3 cut(s)	10, 131, 174
BspANI	GGCC	1 cut(s)	152
BspHI	TCATGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	477
BsrGI	TGTACA	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	352
BssECI	CCNNGG	2 cut(s)	21, 153
BssMI	GATC	3 cut(s)	60, 69, 237
BssT1I	CCWWGG	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	369
BstDSI	CCRYGG	1 cut(s)	153
BstEII	GGTNACC	1 cut(s)	188
BstF5I	GGATG	1 cut(s)	439
BstKTI	GATC	3 cut(s)	63, 72, 240
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	3 cut(s)	60, 69, 237
BstPI	GGTNACC	1 cut(s)	188
BstSLI	GKGCMC	1 cut(s)	44
BstV1I	GCAGC	1 cut(s)	345
BstX2I	RGATCY	1 cut(s)	237
BstYI	RGATCY	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	439
BtsI	GCAGTG	1 cut(s)	119
BtsIMutI	CAGTG	2 cut(s)	12, 119
CaiI	CAGNNNCTG	1 cut(s)	58
CciI	TCATGA	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	177
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	4 cut(s)	74, 302, 355, 370
CviAII	CATG	6 cut(s)	154, 211, 223, 428, 471, 484
CviJI	RGCY	6 cut(s)	152, 160, 199, 364, 404, 439
CviKI_1	RGCY	6 cut(s)	152, 160, 199, 364, 404, 439
CviQI	GTAC	4 cut(s)	74, 302, 355, 370
DpnI	GATC	3 cut(s)	62, 71, 239
DpnII	GATC	3 cut(s)	60, 69, 237
EciI	GGCGGA	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	160
Eco130I	CCWWGG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	160
EcoO109I	RGGNCCY	1 cut(s)	177
EcoO65I	GGTNACC	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	153
EcoT38I	GRGCYC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	153
Esp3I	CGTCTC	1 cut(s)	128
FaeI	CATG	6 cut(s)	157, 214, 226, 431, 474, 487
FaiI	YATR	9 cut(s)	35, 88, 155, 212, 224, 294, 429, 472, 485
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	6 cut(s)	153, 210, 222, 427, 470, 483
FauI	CCCGC	1 cut(s)	167
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	1 cut(s)	446
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	1 cut(s)	334
HaeIII	GGCC	1 cut(s)	152
HgaI	GACGC	1 cut(s)	145
Hin1II	CATG	6 cut(s)	157, 214, 226, 431, 474, 487
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	2 cut(s)	424, 492
Hpy166II	GTNNAC	3 cut(s)	145, 349, 423
Hpy188I	TCNGA	4 cut(s)	122, 237, 384, 456
Hpy188III	TCNNGA	3 cut(s)	64, 223, 496
Hpy8I	GTNNAC	3 cut(s)	145, 349, 423
Hpy99I	CGWCG	1 cut(s)	284
HpyAV	CCTTC	2 cut(s)	100, 244
HpyCH4IV	ACGT	1 cut(s)	412
HpyCH4V	TGCA	1 cut(s)	311
HpySE526I	ACGT	1 cut(s)	412
Hsp92II	CATG	6 cut(s)	157, 214, 226, 431, 474, 487
Kzo9I	GATC	3 cut(s)	60, 69, 237
LmnI	GCTCC	2 cut(s)	109, 157
LpnPI	CCDG	5 cut(s)	65, 71, 125, 315, 365
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	412
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	3 cut(s)	62, 71, 239
MboI	GATC	3 cut(s)	60, 69, 237
MboII	GAAGA	4 cut(s)	40, 79, 94, 238
MflI	RGATCY	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	44, 162
MluCI	AATT	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	418
MmeI	TCCRAC	1 cut(s)	265
MnlI	CCTC	4 cut(s)	31, 179, 227, 375
MseI	TTAA	1 cut(s)	273
MslI	CAYNNNNRTG	3 cut(s)	227, 432, 482
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	3 cut(s)	60, 69, 237
NlaIII	CATG	6 cut(s)	157, 214, 226, 431, 474, 487
NlaIV	GGNNCC	1 cut(s)	178
PagI	TCATGA	1 cut(s)	222
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PfeI	GAWTC	1 cut(s)	492
Pfl23II	CGTACG	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	335
PleI	GAGTC	1 cut(s)	418
PpsI	GAGTC	1 cut(s)	418
PpuMI	RGGWCCY	1 cut(s)	177
Psp124BI	GAGCTC	1 cut(s)	162
Psp5II	RGGWCCY	1 cut(s)	177
PspEI	GGTNACC	1 cut(s)	188
PspLI	CGTACG	1 cut(s)	73
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	1 cut(s)	177
PspPPI	RGGWCCY	1 cut(s)	177
PsrI	GAACNNNNNNTAC	2 cut(s)	269, 301
PstNI	CAGNNNCTG	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	237
RsaI	GTAC	4 cut(s)	75, 303, 356, 371
RsaNI	GTAC	4 cut(s)	74, 302, 355, 370
RseI	CAYNNNNRTG	3 cut(s)	227, 432, 482
SacI	GAGCTC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	3 cut(s)	60, 69, 237
Sau96I	GGNCC	1 cut(s)	177
SchI	GAGTC	1 cut(s)	418
SduI	GDGCHC	2 cut(s)	44, 162
SetI	ASST	9 cut(s)	60, 101, 162, 182, 190, 360, 415, 441, 506
SfaNI	GCATC	1 cut(s)	219
SinI	GGWCC	1 cut(s)	177
SmiMI	CAYNNNNRTG	3 cut(s)	227, 432, 482
Sse9I	AATT	1 cut(s)	398
SsiI	CCGC	3 cut(s)	10, 131, 174
SspMI	CTAG	1 cut(s)	359
SstI	GAGCTC	1 cut(s)	162
StyI	CCWWGG	1 cut(s)	153
TaiI	ACGT	1 cut(s)	415
TaqI	TCGA	3 cut(s)	63, 162, 264
TasI	AATT	1 cut(s)	398
TatI	WGTACW	1 cut(s)	369
TfiI	GAWTC	1 cut(s)	492
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	19, 119
TseI	GCWGC	1 cut(s)	333
TspDTI	ATGAA	4 cut(s)	199, 239, 259, 462
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	2 cut(s)	19, 119
VpaK11BI	GGWCC	1 cut(s)	177
XmiI	GTMKAC	1 cut(s)	348
XspI	CTAG	1 cut(s)	359

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.