Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006770

Physical Location & Seq

Genomic Coordinates Reverse (-)

24908040 .. 24922073

Gene Structure 14034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGCTTCGGTTTGTGGCGGAGACTGCGGTGGACAAGGCCATGGAGCTCGACCACATCGGCAAGGCCTTTGCAGGTAATAAAAAACTCACACCGTTCATGTGCCTCGTTATGAAGTTGCTTCGGATCCAACCGGAAAAGGAAATGGTCATCAAGTTCATTAAGAACGATGACTGCAACAGCAGCAGAAGAATTGAAGACAAAGAAGGTTTTTATCCTGCATCTAGAGATTGTAAGCAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0071011 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

PRP38 PRP38_assoc

Protein Analysis

80

Amino Acids

9.29

Weight (kDa)

8.86

Isoelectric Point (pI)

54.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRP38	PF03371	7 - 58	1.4e-11	PRP38 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40650
fragaria_vesca	FvH4_6g07010
malus_domestica	MD04G1196900.v1.1 MD12G1209800.v1.1
prunus_persica	Prupe.1G236900_v2.0.a1
pyrus_communis	pycom04g17410 pycom12g19720
rosa_chinensis	RchiOBHm_Chr3g0456541
rosa_laevigata	RLG00000025296
rosa_multiflora	Rmu_sc0000161.1_g000061 Rmu_sc0017908.1_g000013 Rmu_sc0023316.1_g000001
rosa_roxburghii	Rroxscaffold_3G00237330 Rroxscaffold_6G00422650
rosa_rugosa	Rorug03G0013800
rosa_samantha	Rh1BG185200 Rh1DG215000 Rh3AG074400 Rh3BG076100 Rh3CG075800 Rh3DG077900 Rh5AG404200 Rh5DG431400 Rh7AG053000 Rh7BG052600
rosa_wichuraiana	Rw3G006370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	62
AciI	CCGC	2 cut(s)	17, 26
AclWI	GGATC	2 cut(s)	118, 131
AgsI	TTSAA	1 cut(s)	194
AluBI	AGCT	1 cut(s)	46
AluI	AGCT	1 cut(s)	46
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	2 cut(s)	118, 131
AoxI	GGCC	2 cut(s)	36, 63
ApeKI	GCWGC	1 cut(s)	180
BamHI	GGATCC	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	48
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	181
BlsI	GCNGC	1 cut(s)	182
BmiI	GGNNCC	1 cut(s)	125
BmsI	GCATC	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	192
BshFI	GGCC	2 cut(s)	38, 65
BsiHKAI	GWGCWC	1 cut(s)	48
BsiSI	CCGG	1 cut(s)	131
BsmAI	GTCTC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	38, 65
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	123
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	2 cut(s)	17, 26
BspANI	GGCC	2 cut(s)	38, 65
BspLI	GGNNCC	1 cut(s)	125
BspMI	ACCTGC	1 cut(s)	62
BspPI	GGATC	2 cut(s)	118, 131
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	1 cut(s)	123
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	93
BstDSI	CCRYGG	1 cut(s)	39
BstKTI	GATC	1 cut(s)	126
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	123
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 180
BstV1I	GCAGC	1 cut(s)	192
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	123
BstYI	RGATCY	1 cut(s)	123
BsuRI	GGCC	2 cut(s)	38, 65
BtgI	CCRYGG	1 cut(s)	39
BveI	ACCTGC	1 cut(s)	62
CviAII	CATG	2 cut(s)	40, 97
CviJI	RGCY	3 cut(s)	38, 46, 65
CviKI_1	RGCY	3 cut(s)	38, 46, 65
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
EciI	GGCGGA	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	46
Eco130I	CCWWGG	1 cut(s)	39
Eco147I	AGGCCT	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	48
Eco53kI	GAGCTC	1 cut(s)	46
EcoICRI	GAGCTC	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	43, 100
FaiI	YATR	3 cut(s)	41, 98, 110
FatI	CATG	2 cut(s)	39, 96
Fnu4HI	GCNGC	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	48
Fsp4HI	GCNGC	1 cut(s)	181
FspBI	CTAG	1 cut(s)	222
GluI	GCNGC	1 cut(s)	181
HaeIII	GGCC	2 cut(s)	38, 65
HapII	CCGG	1 cut(s)	131
Hin1II	CATG	2 cut(s)	43, 100
HpaII	CCGG	1 cut(s)	131
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	1 cut(s)	222
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	93
HpyCH4V	TGCA	3 cut(s)	71, 174, 218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 180
Hsp92II	CATG	2 cut(s)	43, 100
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	1 cut(s)	43
LpnPI	CCDG	3 cut(s)	57, 144, 228
Lsp1109I	GCAGC	1 cut(s)	192
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	222
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	2 cut(s)	198, 206
MflI	RGATCY	1 cut(s)	123
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	189
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	1 cut(s)	113
MseI	TTAA	1 cut(s)	159
MspI	CCGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	23, 180
NcoI	CCATGG	1 cut(s)	39
NdeII	GATC	1 cut(s)	123
NlaIII	CATG	2 cut(s)	43, 100
NlaIV	GGNNCC	1 cut(s)	125
PceI	AGGCCT	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	182
Psp124BI	GAGCTC	1 cut(s)	48
PspN4I	GGNNCC	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	159
SatI	GCNGC	1 cut(s)	181
Sau3AI	GATC	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	3 cut(s)	48, 76, 208
SfaNI	GCATC	1 cut(s)	227
Sse9I	AATT	1 cut(s)	189
SseBI	AGGCCT	1 cut(s)	65
SsiI	CCGC	2 cut(s)	17, 26
SspMI	CTAG	1 cut(s)	222
SstI	GAGCTC	1 cut(s)	48
StuI	AGGCCT	1 cut(s)	65
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	93
TaqI	TCGA	1 cut(s)	48
TasI	AATT	1 cut(s)	189
Tru1I	TTAA	1 cut(s)	159
Tru9I	TTAA	1 cut(s)	159
TseI	GCWGC	1 cut(s)	180
TspDTI	ATGAA	3 cut(s)	85, 125, 145
XbaI	TCTAGA	1 cut(s)	221
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.