Rh7AG053000

PRP38 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0006770
Physical Location & Seq
Forward (+)
3674559 .. 3681620
7062 bp
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UTR
Exon/CDS
Intron
Rh7AG053000.1

Sequence Viewer

Length: 207 bp
ATGGAGCTTGACCACATTGGTGGCCTCTTTAGACGTGACCGCTGCAACCCCACACCTTTCCTGTGCCTCGTGGTGAGGATGCTTAAGGTTTTGTATGAGAAGAGCTACGCCATAGAGTTGATCCGAAACCTCGACTACATATACCCCAGGGTACTTGGTGCGTTCTATTTGCGTCTTACAGGCGCTAATGCGGATATGTGCCAGTAG

Protein Analysis

68

Amino Acids

7.97

Weight (kDa)

8.55

Isoelectric Point (pI)

41.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRP38 PF03371 2 - 67 1.5e-12 PRP38 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 40, 191
AclWI GGATC 1 cut(s) 115
AfaI GTAC 1 cut(s) 153
AflII CTTAAG 1 cut(s) 83
AjiI CACGTC 1 cut(s) 35
AjnI CCWGG 1 cut(s) 146
AleI CACNNNNGTG 1 cut(s) 18
AluBI AGCT 2 cut(s) 7, 105
AluI AGCT 2 cut(s) 7, 105
AlwI GGATC 1 cut(s) 115
AoxI GGCC 1 cut(s) 22
ApeKI GCWGC 1 cut(s) 42
AspLEI GCGC 1 cut(s) 185
AsuHPI GGTGA 1 cut(s) 85
BauI CACGAG 1 cut(s) 68
BbvI GCAGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 148
BfoI RGCGCY 1 cut(s) 186
BfrI CTTAAG 1 cut(s) 83
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 35
BmrFI CCNGG 1 cut(s) 148
BmsI GCATC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 146, 147
Bse1I ACTGG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 148
BseDI CCNNGG 2 cut(s) 146, 147
BseGI GGATG 1 cut(s) 84
BseNI ACTGG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 29
BshFI GGCC 1 cut(s) 24
BsnI GGCC 1 cut(s) 24
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 2 cut(s) 40, 191
BspANI GGCC 1 cut(s) 24
BspPI GGATC 1 cut(s) 115
BspQI GCTCTTC 1 cut(s) 95
BspTI CTTAAG 1 cut(s) 83
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 2 cut(s) 146, 147
BssMI GATC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 68
Bst2BI CACGAG 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 148
Bst6I CTCTTC 1 cut(s) 95
BstAFI CTTAAG 1 cut(s) 83
BstF5I GGATG 1 cut(s) 84
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 1 cut(s) 185
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstNI CCWGG 1 cut(s) 148
BstSCI CCNGG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 29
BstXI CCANNNNNNTGG 1 cut(s) 20
BsuRI GGCC 1 cut(s) 24
BtrI CACGTC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 84
CfoI GCGC 1 cut(s) 185
CseI GACGC 1 cut(s) 161
Csp6I GTAC 1 cut(s) 152
CviJI RGCY 3 cut(s) 7, 24, 105
CviKI_1 RGCY 3 cut(s) 7, 24, 105
CviQI GTAC 1 cut(s) 152
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
EcoRII CCWGG 1 cut(s) 146
FaiI YATR 5 cut(s) 96, 113, 140, 142, 197
Fnu4HI GCNGC 1 cut(s) 43
FokI GGATG 1 cut(s) 91
Fsp4HI GCNGC 1 cut(s) 43
GlaI GCGC 1 cut(s) 184
GluI GCNGC 1 cut(s) 43
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 1 cut(s) 24
HgaI GACGC 1 cut(s) 161
HhaI GCGC 1 cut(s) 185
Hin6I GCGC 1 cut(s) 183
HinP1I GCGC 1 cut(s) 183
HphI GGTGA 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 125
HpyCH4IV ACGT 1 cut(s) 34
HpyCH4V TGCA 1 cut(s) 45
HpySE526I ACGT 1 cut(s) 34
HspAI GCGC 1 cut(s) 183
Kzo9I GATC 1 cut(s) 120
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 4 cut(s) 74, 133, 160, 165
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 69
MaeII ACGT 1 cut(s) 34
MaeIII GTNAC 1 cut(s) 35
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 1 cut(s) 112
MnlI CCTC 4 cut(s) 35, 69, 77, 140
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 18
MspA1I CMGCKG 1 cut(s) 42
MspCI CTTAAG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 148
MvaI CCWGG 1 cut(s) 148
NdeII GATC 1 cut(s) 120
NmuCI GTSAC 1 cut(s) 35
OliI CACNNNNGTG 1 cut(s) 18
PasI CCCWGGG 1 cut(s) 147
PciSI GCTCTTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 146
PspGI CCWGG 1 cut(s) 146
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
RseI CAYNNNNRTG 1 cut(s) 18
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 1 cut(s) 120
ScrFI CCNGG 1 cut(s) 148
SetI ASST 6 cut(s) 9, 37, 58, 90, 107, 132
SfaNI GCATC 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 18
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
SsiI CCGC 2 cut(s) 40, 191
StyD4I CCNGG 1 cut(s) 146
TaiI ACGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 132
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseFI GTSAC 1 cut(s) 35
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 35
Vha464I CTTAAG 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.