FvH4_6g08560

Anaphase-promoting complex subunit 11 RING-H2 finger

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
5078148 .. 5080203
2056 bp
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UTR
Exon/CDS
Intron
FvH4_6g08560.t1

Sequence Viewer

Length: 315 bp
ATGCTGCGAGCATTTTATAGAAAGAGTTTTCTCTTGACCCTCTTTCCTCTTTGTGACTTTCTGCTTGGATTTCAAACAGAGTGGCATGCTGTTGCTGCATGGACATGGGATGCACAGGATGAAACATGTGGCATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAGCTCCCTGGGGATGATTGCCCACTAATCTGGGGTGCTTGCAACCATGCTTTTCATCTTCATTGCATCCTAAAATGGGTAAATTCACAGACTTCTCAAGCACATTGCCCCATGTGCCGGAGGGAGTGGCAATTCAAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

12.06

Weight (kDa)

6.48

Isoelectric Point (pI)

31.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-ANAPC11 PF12861 40 - 103 3.6e-35 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1 PF12678 41 - 97 8.6e-22 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 253
AfiI CCNNNNNNNGG 2 cut(s) 247, 288
AflIII ACRYGT 1 cut(s) 125
AgsI TTSAA 2 cut(s) 74, 307
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 1 cut(s) 175
AluI AGCT 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 4, 95
ApoI RAATTY 1 cut(s) 253
BbvI GCAGC 1 cut(s) 82
BccI CCATC 2 cut(s) 136, 146
BciT130I CCWGG 1 cut(s) 180
BisI GCNGC 2 cut(s) 5, 96
BlsI GCNGC 2 cut(s) 6, 97
Bme1390I CCNGG 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 2 cut(s) 100, 246
BpuEI CTTGAG 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 178, 179
Bsc4I CCNNNNNNNGG 2 cut(s) 247, 288
Bse3DI GCAATG 2 cut(s) 232, 274
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 2 cut(s) 178, 179
BseGI GGATG 5 cut(s) 115, 124, 147, 190, 237
BseLI CCNNNNNNNGG 2 cut(s) 247, 288
BseMI GCAATG 2 cut(s) 232, 274
BseXI GCAGC 1 cut(s) 82
BsiSI CCGG 1 cut(s) 289
BslI CCNNNNNNNGG 2 cut(s) 247, 288
BsrDI GCAATG 2 cut(s) 232, 274
BssECI CCNNGG 2 cut(s) 178, 179
Bst2UI CCWGG 1 cut(s) 180
BstC8I GCNNGC 3 cut(s) 9, 87, 211
BstF5I GGATG 5 cut(s) 115, 124, 147, 190, 237
BstMWI GCNNNNNNNGC 2 cut(s) 95, 285
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 2 cut(s) 89, 129
BstSCI CCNGG 1 cut(s) 178
BstV1I GCAGC 1 cut(s) 82
BstXI CCANNNNNNTGG 1 cut(s) 201
BtsCI GGATG 5 cut(s) 115, 124, 147, 190, 237
Cac8I GCNNGC 3 cut(s) 9, 87, 211
CspCI CAANNNNNGTGG 2 cut(s) 62, 97
CviAII CATG 6 cut(s) 86, 99, 105, 126, 218, 283
CviJI RGCY 1 cut(s) 175
CviKI_1 RGCY 1 cut(s) 175
EcoRII CCWGG 1 cut(s) 178
FaeI CATG 6 cut(s) 89, 102, 108, 129, 221, 286
FaiI YATR 7 cut(s) 18, 87, 100, 106, 127, 219, 284
FatI CATG 6 cut(s) 85, 98, 104, 125, 217, 282
Fnu4HI GCNGC 2 cut(s) 5, 96
FokI GGATG 5 cut(s) 122, 131, 154, 197, 224
Fsp4HI GCNGC 2 cut(s) 5, 96
GluI GCNGC 2 cut(s) 5, 96
HapII CCGG 1 cut(s) 289
Hin1II CATG 6 cut(s) 89, 102, 108, 129, 221, 286
HpaII CCGG 1 cut(s) 289
Hpy188III TCNNGA 2 cut(s) 34, 164
HpyCH4V TGCA 4 cut(s) 98, 113, 213, 237
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 285
Hsp92II CATG 6 cut(s) 89, 102, 108, 129, 221, 286
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 6 cut(s) 101, 165, 177, 187, 192, 302
Lsp1109I GCAGC 1 cut(s) 82
LweI GCATC 2 cut(s) 100, 246
MaeIII GTNAC 1 cut(s) 53
MboII GAAGA 1 cut(s) 221
MluCI AATT 2 cut(s) 253, 302
MnlI CCTC 3 cut(s) 50, 57, 285
MslI CAYNNNNRTG 1 cut(s) 103
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 2 cut(s) 95, 285
NlaIII CATG 6 cut(s) 89, 102, 108, 129, 221, 286
NmuCI GTSAC 1 cut(s) 53
NspI RCATGY 2 cut(s) 89, 129
PaeI GCATGC 1 cut(s) 89
PasI CCCWGGG 1 cut(s) 179
PciI ACATGT 1 cut(s) 125
PkrI GCNGC 2 cut(s) 6, 97
PscI ACATGT 1 cut(s) 125
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 103
SatI GCNGC 2 cut(s) 5, 96
ScrFI CCNGG 1 cut(s) 180
SetI ASST 1 cut(s) 177
SfaNI GCATC 2 cut(s) 100, 246
SmiMI CAYNNNNRTG 1 cut(s) 103
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
SphI GCATGC 1 cut(s) 89
Sse9I AATT 2 cut(s) 253, 302
StyD4I CCNGG 1 cut(s) 178
TasI AATT 2 cut(s) 253, 302
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 4, 95
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 135, 215, 221
XapI RAATTY 1 cut(s) 253
XceI RCATGY 2 cut(s) 89, 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.