Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0009834

Physical Location & Seq

Genomic Coordinates Forward (+)

7136277 .. 7143071

Gene Structure 6795 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG088500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGGGTTTTCAGAGGTGCAGGGAATCACAATACTGGGAAAAGACCCAACCTTTCAGAGTCTTTAGGGTTTTTGGCTTCAGGGTTTTGCAGTTTCAGGAGAAGAGGATGAAAGTCAAGATCTTGCAGTGGCATGCTGTTGCTGCATGGACATGGGATGCTCAGGACGAAACATGTGGCATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAGCTCCCTGGGGATGATTGCCCACTAATCTGGGGTGCATGCAACCATGCATTTCATCTTCATTGCATCCTAAAATGGGTAAATTCACAGACTTCTCAAGCGCATTGCCCCATGTGCCGGAGGGAGTGGCAGTTCAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

zf-ANAPC11

Protein Analysis

119

Amino Acids

14.15

Weight (kDa)

8.7

Isoelectric Point (pI)

36.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-ANAPC11	PF12861	55 - 118	5.3e-35	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	56 - 112	1.2e-21	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0009834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05870 AT3G05870 AT3G05870 AT3G05870
fragaria_vesca	FvH4_6g08560
pyrus_communis	pycom09g09480
rosa_laevigata	RLG00000030385
rosa_multiflora	Rmu_sc0031274.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108000
rosa_rugosa	Rorug03G0030300
rosa_samantha	Rh1AG045400 Rh1BG109200 Rh1CG048200 Rh1CG049200 Rh1CG050000 Rh1DG053400 Rh3AG088500 Rh3BG091500 Rh3CG091600
rosa_wichuraiana	Rw0G001050 Rw1G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	61
AfiI	CCNNNNNNNGG	2 cut(s)	292, 333
AflIII	ACRYGT	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	223
AloI	GAACNNNNNNTCC	1 cut(s)	332
AluBI	AGCT	1 cut(s)	220
AluI	AGCT	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	298
AspLEI	GCGC	1 cut(s)	319
BbvI	GCAGC	1 cut(s)	127
BccI	CCATC	2 cut(s)	181, 191
BciT130I	CCWGG	1 cut(s)	225
BglII	AGATCT	1 cut(s)	117
BisI	GCNGC	1 cut(s)	141
BlsI	GCNGC	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	225
BmrI	ACTGGG	1 cut(s)	43
BmsI	GCATC	2 cut(s)	145, 291
BmuI	ACTGGG	1 cut(s)	43
Bpu10I	CCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	223, 224
BsaXI	ACNNNNNCTCC	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	2 cut(s)	292, 333
Bse1I	ACTGG	1 cut(s)	38
Bse3DI	GCAATG	2 cut(s)	277, 319
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	223, 224
BseGI	GGATG	5 cut(s)	111, 160, 192, 235, 282
BseLI	CCNNNNNNNGG	2 cut(s)	292, 333
BseMI	GCAATG	2 cut(s)	277, 319
BseMII	CTCAG	1 cut(s)	173
BseNI	ACTGG	1 cut(s)	38
BseXI	GCAGC	1 cut(s)	127
BsgI	GTGCAG	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	292, 333
Bsp143I	GATC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	172
BsrDI	GCAATG	2 cut(s)	277, 319
BsrI	ACTGG	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	223, 224
BssMI	GATC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	225
Bst6I	CTCTTC	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	132, 256
BstDEI	CTNAG	1 cut(s)	159
BstF5I	GGATG	5 cut(s)	111, 160, 192, 235, 282
BstHHI	GCGC	1 cut(s)	319
BstKTI	GATC	1 cut(s)	120
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 330
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	3 cut(s)	134, 174, 258
BstSCI	CCNGG	1 cut(s)	223
BstV1I	GCAGC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	117
BstXI	CCANNNNNNTGG	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	117
BtsCI	GGATG	5 cut(s)	111, 160, 192, 235, 282
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	132, 256
CfoI	GCGC	1 cut(s)	319
CviAII	CATG	7 cut(s)	131, 144, 150, 171, 255, 263, 328
CviJI	RGCY	2 cut(s)	75, 220
CviKI_1	RGCY	2 cut(s)	75, 220
DdeI	CTNAG	1 cut(s)	159
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	268
FaeI	CATG	7 cut(s)	134, 147, 153, 174, 258, 266, 331
FaiI	YATR	7 cut(s)	132, 145, 151, 172, 256, 264, 329
FatI	CATG	7 cut(s)	130, 143, 149, 170, 254, 262, 327
Fnu4HI	GCNGC	1 cut(s)	141
FokI	GGATG	5 cut(s)	118, 167, 199, 242, 269
Fsp4HI	GCNGC	1 cut(s)	141
GlaI	GCGC	1 cut(s)	318
GluI	GCNGC	1 cut(s)	141
HapII	CCGG	1 cut(s)	334
HhaI	GCGC	1 cut(s)	319
Hin1II	CATG	7 cut(s)	134, 147, 153, 174, 258, 266, 331
Hin6I	GCGC	1 cut(s)	317
HinP1I	GCGC	1 cut(s)	317
HinfI	GANTC	2 cut(s)	23, 57
HpaII	CCGG	1 cut(s)	334
Hpy188I	TCNGA	2 cut(s)	12, 56
Hpy188III	TCNNGA	4 cut(s)	95, 115, 161, 209
HpyCH4V	TGCA	8 cut(s)	18, 88, 124, 143, 254, 258, 266, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 330
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	7 cut(s)	134, 147, 153, 174, 258, 266, 331
HspAI	GCGC	1 cut(s)	317
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	1 cut(s)	225
Lsp1109I	GCAGC	1 cut(s)	127
LweI	GCATC	2 cut(s)	145, 291
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	2 cut(s)	112, 266
MflI	RGATCY	1 cut(s)	117
MluCI	AATT	1 cut(s)	298
MlyI	GAGTC	1 cut(s)	66
MnlI	CCTC	3 cut(s)	6, 96, 330
Mph1103I	ATGCAT	1 cut(s)	268
MslI	CAYNNNNRTG	1 cut(s)	148
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	2 cut(s)	140, 330
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	7 cut(s)	134, 147, 153, 174, 258, 266, 331
NsiI	ATGCAT	1 cut(s)	268
NspI	RCATGY	3 cut(s)	134, 174, 258
PaeI	GCATGC	2 cut(s)	134, 258
PasI	CCCWGGG	1 cut(s)	224
PciI	ACATGT	1 cut(s)	170
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	142
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
PscI	ACATGT	1 cut(s)	170
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PsuI	RGATCY	1 cut(s)	117
RseI	CAYNNNNRTG	1 cut(s)	148
SatI	GCNGC	1 cut(s)	141
Sau3AI	GATC	1 cut(s)	117
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	1 cut(s)	225
SetI	ASST	3 cut(s)	17, 52, 222
SfaNI	GCATC	2 cut(s)	145, 291
SmiMI	CAYNNNNRTG	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	312
SmoI	CTYRAG	1 cut(s)	312
SphI	GCATGC	2 cut(s)	134, 258
Sse9I	AATT	1 cut(s)	298
StyD4I	CCNGG	1 cut(s)	223
TasI	AATT	1 cut(s)	298
TfiI	GAWTC	1 cut(s)	23
TscAI	CASTG	1 cut(s)	131
TseI	GCWGC	1 cut(s)	140
TspDTI	ATGAA	3 cut(s)	122, 260, 266
TspRI	CASTG	1 cut(s)	131
XapI	RAATTY	1 cut(s)	298
XceI	RCATGY	3 cut(s)	134, 174, 258
Zsp2I	ATGCAT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.