DNA (cytosine-5)-methyltransferase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G05870 AT3G05870 AT3G05870 AT3G05870 |
| fragaria_vesca | FvH4_6g08560 |
| pyrus_communis | pycom09g09480 |
| rosa_laevigata | RLG00000030385 |
| rosa_multiflora | Rmu_sc0031274.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00108000 |
| rosa_rugosa | Rorug03G0030300 |
| rosa_samantha | Rh1AG045400 Rh1BG109200 Rh1CG048200 Rh1CG049200 Rh1CG050000 Rh1DG053400 Rh3AG088500 Rh3BG091500 Rh3CG091600 |
| rosa_wichuraiana | Rw0G001050 Rw1G003970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 383 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 58 |
| AgsI | TTSAA | 1 cut(s) | 140 |
| AjnI | CCWGG | 1 cut(s) | 28 |
| AluBI | AGCT | 6 cut(s) | 66, 279, 309, 355, 407, 429 |
| AluI | AGCT | 6 cut(s) | 66, 279, 309, 355, 407, 429 |
| Alw21I | GWGCWC | 1 cut(s) | 68 |
| ApeKI | GCWGC | 1 cut(s) | 463 |
| AsuHPI | GGTGA | 2 cut(s) | 73, 326 |
| AsuII | TTCGAA | 1 cut(s) | 303 |
| BanII | GRGCYC | 1 cut(s) | 68 |
| Bbv12I | GWGCWC | 1 cut(s) | 68 |
| BbvI | GCAGC | 1 cut(s) | 450 |
| BccI | CCATC | 3 cut(s) | 109, 127, 266 |
| BciT130I | CCWGG | 1 cut(s) | 30 |
| BclI | TGATCA | 2 cut(s) | 100, 369 |
| BfaI | CTAG | 2 cut(s) | 212, 502 |
| BfmI | CTRYAG | 1 cut(s) | 408 |
| BisI | GCNGC | 1 cut(s) | 464 |
| BlsI | GCNGC | 1 cut(s) | 465 |
| Bme1390I | CCNGG | 1 cut(s) | 30 |
| BmrFI | CCNGG | 1 cut(s) | 30 |
| BmsI | GCATC | 2 cut(s) | 166, 477 |
| Bpu14I | TTCGAA | 1 cut(s) | 303 |
| BsaBI | GATNNNNATC | 2 cut(s) | 249, 456 |
| BsaJI | CCNNGG | 1 cut(s) | 342 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 58 |
| Bse1I | ACTGG | 1 cut(s) | 14 |
| Bse8I | GATNNNNATC | 2 cut(s) | 249, 456 |
| BseBI | CCWGG | 1 cut(s) | 30 |
| BseDI | CCNNGG | 1 cut(s) | 342 |
| BseGI | GGATG | 3 cut(s) | 120, 292, 338 |
| BseJI | GATNNNNATC | 2 cut(s) | 249, 456 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 58 |
| BseMII | CTCAG | 1 cut(s) | 51 |
| BseNI | ACTGG | 1 cut(s) | 14 |
| BseRI | GAGGAG | 3 cut(s) | 185, 359, 407 |
| BseXI | GCAGC | 1 cut(s) | 450 |
| BsiHKAI | GWGCWC | 1 cut(s) | 68 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 58 |
| Bsp119I | TTCGAA | 1 cut(s) | 303 |
| Bsp1286I | GDGCHC | 1 cut(s) | 68 |
| Bsp143I | GATC | 3 cut(s) | 100, 250, 369 |
| BspCNI | CTCAG | 1 cut(s) | 50 |
| BspHI | TCATGA | 1 cut(s) | 327 |
| BspQI | GCTCTTC | 1 cut(s) | 436 |
| BspT104I | TTCGAA | 1 cut(s) | 303 |
| BsrI | ACTGG | 1 cut(s) | 14 |
| BssECI | CCNNGG | 1 cut(s) | 342 |
| BssMI | GATC | 3 cut(s) | 100, 250, 369 |
| Bst2UI | CCWGG | 1 cut(s) | 30 |
| Bst6I | CTCTTC | 2 cut(s) | 384, 436 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 487 |
| BstBI | TTCGAA | 1 cut(s) | 303 |
| BstDEI | CTNAG | 3 cut(s) | 37, 126, 425 |
| BstF5I | GGATG | 3 cut(s) | 120, 292, 338 |
| BstKTI | GATC | 3 cut(s) | 103, 253, 372 |
| BstMBI | GATC | 3 cut(s) | 100, 250, 369 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 404, 472, 487 |
| BstNI | CCWGG | 1 cut(s) | 30 |
| BstSCI | CCNGG | 1 cut(s) | 28 |
| BstSFI | CTRYAG | 1 cut(s) | 408 |
| BstV1I | GCAGC | 1 cut(s) | 450 |
| BtsCI | GGATG | 3 cut(s) | 120, 292, 338 |
| CciI | TCATGA | 1 cut(s) | 327 |
| Csp6I | GTAC | 1 cut(s) | 382 |
| CviAII | CATG | 4 cut(s) | 69, 158, 328, 361 |
| CviJI | RGCY | 8 cut(s) | 13, 66, 279, 309, 355, 398, 407, 429 |
| CviKI_1 | RGCY | 8 cut(s) | 13, 66, 279, 309, 355, 398, 407, 429 |
| CviQI | GTAC | 1 cut(s) | 382 |
| DdeI | CTNAG | 3 cut(s) | 37, 126, 425 |
| DpnI | GATC | 3 cut(s) | 102, 252, 371 |
| DpnII | GATC | 3 cut(s) | 100, 250, 369 |
| Eam1104I | CTCTTC | 2 cut(s) | 384, 436 |
| EarI | CTCTTC | 2 cut(s) | 384, 436 |
| Ecl136II | GAGCTC | 1 cut(s) | 66 |
| Eco24I | GRGCYC | 1 cut(s) | 68 |
| Eco53kI | GAGCTC | 1 cut(s) | 66 |
| EcoICRI | GAGCTC | 1 cut(s) | 66 |
| EcoRII | CCWGG | 1 cut(s) | 28 |
| EcoT38I | GRGCYC | 1 cut(s) | 68 |
| FaeI | CATG | 4 cut(s) | 72, 161, 331, 364 |
| FaiI | YATR | 9 cut(s) | 20, 70, 110, 159, 270, 329, 362, 404, 410 |
| FalI | AAGNNNNNCTT | 1 cut(s) | 476 |
| FatI | CATG | 4 cut(s) | 68, 157, 327, 360 |
| FbaI | TGATCA | 2 cut(s) | 100, 369 |
| Fnu4HI | GCNGC | 1 cut(s) | 464 |
| FokI | GGATG | 3 cut(s) | 127, 299, 325 |
| FriOI | GRGCYC | 1 cut(s) | 68 |
| Fsp4HI | GCNGC | 1 cut(s) | 464 |
| FspBI | CTAG | 2 cut(s) | 212, 502 |
| GluI | GCNGC | 1 cut(s) | 464 |
| Hin1II | CATG | 4 cut(s) | 72, 161, 331, 364 |
| HindIII | AAGCTT | 1 cut(s) | 277 |
| HinfI | GANTC | 3 cut(s) | 203, 245, 331 |
| HphI | GGTGA | 2 cut(s) | 73, 326 |
| Hpy166II | GTNNAC | 1 cut(s) | 384 |
| Hpy188I | TCNGA | 4 cut(s) | 250, 265, 298, 343 |
| Hpy188III | TCNNGA | 6 cut(s) | 98, 152, 185, 212, 328, 440 |
| Hpy8I | GTNNAC | 1 cut(s) | 384 |
| HpyAV | CCTTC | 1 cut(s) | 502 |
| HpyCH4V | TGCA | 2 cut(s) | 179, 235 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 404, 472, 487 |
| HpyF3I | CTNAG | 3 cut(s) | 37, 126, 425 |
| Hsp92II | CATG | 4 cut(s) | 72, 161, 331, 364 |
| Ksp22I | TGATCA | 2 cut(s) | 100, 369 |
| Kzo9I | GATC | 3 cut(s) | 100, 250, 369 |
| LguI | GCTCTTC | 1 cut(s) | 436 |
| LmnI | GCTCC | 1 cut(s) | 198 |
| LpnPI | CCDG | 6 cut(s) | 15, 42, 137, 170, 297, 425 |
| Lsp1109I | GCAGC | 1 cut(s) | 450 |
| LweI | GCATC | 2 cut(s) | 166, 477 |
| MaeI | CTAG | 2 cut(s) | 212, 502 |
| MalI | GATC | 3 cut(s) | 102, 252, 371 |
| MboI | GATC | 3 cut(s) | 100, 250, 369 |
| MboII | GAAGA | 8 cut(s) | 72, 142, 176, 213, 401, 423, 487, 496 |
| MhlI | GDGCHC | 1 cut(s) | 68 |
| MluCI | AATT | 3 cut(s) | 147, 180, 443 |
| MlyI | GAGTC | 1 cut(s) | 340 |
| MmeI | TCCRAC | 1 cut(s) | 108 |
| MnlI | CCTC | 8 cut(s) | 62, 206, 271, 313, 337, 340, 385, 388 |
| MspR9I | CCNGG | 1 cut(s) | 30 |
| MvaI | CCWGG | 1 cut(s) | 30 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 404, 472, 487 |
| NdeII | GATC | 3 cut(s) | 100, 250, 369 |
| NlaIII | CATG | 4 cut(s) | 72, 161, 331, 364 |
| NspV | TTCGAA | 1 cut(s) | 303 |
| PagI | TCATGA | 1 cut(s) | 327 |
| PciSI | GCTCTTC | 1 cut(s) | 436 |
| PfeI | GAWTC | 2 cut(s) | 203, 245 |
| PfoI | TCCNGGA | 1 cut(s) | 28 |
| PkrI | GCNGC | 1 cut(s) | 465 |
| PleI | GAGTC | 1 cut(s) | 339 |
| PpsI | GAGTC | 1 cut(s) | 339 |
| Psp124BI | GAGCTC | 1 cut(s) | 68 |
| Psp6I | CCWGG | 1 cut(s) | 28 |
| PspGI | CCWGG | 1 cut(s) | 28 |
| RsaI | GTAC | 1 cut(s) | 383 |
| RsaNI | GTAC | 1 cut(s) | 382 |
| SacI | GAGCTC | 1 cut(s) | 68 |
| SapI | GCTCTTC | 1 cut(s) | 436 |
| SatI | GCNGC | 1 cut(s) | 464 |
| Sau3AI | GATC | 3 cut(s) | 100, 250, 369 |
| SchI | GAGTC | 1 cut(s) | 340 |
| ScrFI | CCNGG | 1 cut(s) | 30 |
| SduI | GDGCHC | 1 cut(s) | 68 |
| SetI | ASST | 6 cut(s) | 68, 281, 311, 357, 409, 431 |
| SfaNI | GCATC | 2 cut(s) | 166, 477 |
| SfcI | CTRYAG | 1 cut(s) | 408 |
| SfuI | TTCGAA | 1 cut(s) | 303 |
| Sse9I | AATT | 3 cut(s) | 147, 180, 443 |
| SspMI | CTAG | 2 cut(s) | 212, 502 |
| SstI | GAGCTC | 1 cut(s) | 68 |
| StyD4I | CCNGG | 1 cut(s) | 28 |
| TaqI | TCGA | 1 cut(s) | 303 |
| TasI | AATT | 3 cut(s) | 147, 180, 443 |
| TfiI | GAWTC | 2 cut(s) | 203, 245 |
| TseI | GCWGC | 1 cut(s) | 463 |
| TspDTI | ATGAA | 1 cut(s) | 17 |
| XbaI | TCTAGA | 1 cut(s) | 211 |
| XspI | CTAG | 2 cut(s) | 212, 502 |