Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009834

Physical Location & Seq

Genomic Coordinates Forward (+)

9100726 .. 9107266

Gene Structure 6541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG049200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTGGAGCGAATCGGAAATCTGGGCGAGGCACTCGTCGACGTTGCCGCCAAACGCTATGGAAGCGATGGCGAGACCATGTTGACCATGATGGTTTATGATCAAACGTCAGTCTTGAGGTGGCATGCTGTTGCTGCATGGACATGGGATGCTCAGGACGAAACATGTGGCATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAGCTCCCTGGGGATGATTGCCCACTAATTTGGGGTGCATGCAACCATGCATTTCATCTTCATTGCATCCTAAAATGGGTAAAATTCAGAGACTTCTCAAGCACATTGCCTCATGTGCCGGAGGGAGTGGCAGTTCAAAGGATGAGAGAAAAATTGGGATCCCTTTTAAGGAATTCCTGCCCCCTTCTCTCTCTCTGTCATAATGTGCAGGGATTGCCGGTGCAGACTCGCAAATGTTCGGTTGATATTAGACTGAGGCAATGTACATTTTGTGTATCTGGTTATCTATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0006464 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0009896 GO:0009987 GO:0010564 GO:0010638 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030071 GO:0031331 GO:0031461 GO:0032270 GO:0032436 GO:0032446 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045732 GO:0045787 GO:0045840 GO:0045842 GO:0045862 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051247 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0051983 GO:0051984 GO:0061630 GO:0061659 GO:0062033 GO:0065007 GO:0070647 GO:0071704 GO:0090068 GO:0097602 GO:0140096 GO:1901564 GO:1901800 GO:1901970 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902099 GO:1902101 GO:1902494 GO:1903052 GO:1903364 GO:1905818 GO:1905820 GO:1990234 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

zf-ANAPC11

Protein Analysis

167

Amino Acids

18.71

Weight (kDa)

6.96

Isoelectric Point (pI)

36.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-ANAPC11	PF12861	53 - 101	1.2e-26	Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1	PF12678	54 - 99	2.4e-19	RING-H2 zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05870 AT3G05870 AT3G05870 AT3G05870
fragaria_vesca	FvH4_6g08560
pyrus_communis	pycom09g09480
rosa_laevigata	RLG00000030385
rosa_multiflora	Rmu_sc0031274.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108000
rosa_rugosa	Rorug03G0030300
rosa_samantha	Rh1AG045400 Rh1BG109200 Rh1CG048200 Rh1CG049200 Rh1CG050000 Rh1DG053400 Rh3AG088500 Rh3BG091500 Rh3CG091600
rosa_wichuraiana	Rw0G001050 Rw1G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AciI	CCGC	1 cut(s)	48
AclWI	GGATC	2 cut(s)	363, 376
AcsI	RAATTY	2 cut(s)	293, 382
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	2 cut(s)	286, 378
AflIII	ACRYGT	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	347
AjnI	CCWGG	1 cut(s)	217
AloI	GAACNNNNNNTCC	2 cut(s)	327, 359
AluBI	AGCT	1 cut(s)	214
AluI	AGCT	1 cut(s)	214
Alw26I	GTCTC	2 cut(s)	68, 294
AlwI	GGATC	2 cut(s)	363, 376
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	2 cut(s)	293, 382
BamHI	GGATCC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	4 cut(s)	62, 85, 175, 185
BciT130I	CCWGG	1 cut(s)	219
BclI	TGATCA	1 cut(s)	100
BcoDI	GTCTC	2 cut(s)	68, 294
BisI	GCNGC	2 cut(s)	48, 135
BlsI	GCNGC	2 cut(s)	49, 136
Bme1390I	CCNGG	1 cut(s)	219
BmiI	GGNNCC	1 cut(s)	370
BmrFI	CCNGG	1 cut(s)	219
BmsI	GCATC	2 cut(s)	139, 285
Bpu10I	CCTNAGC	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	136, 292
BsaI	GGTCTC	1 cut(s)	68
BsaJI	CCNNGG	2 cut(s)	217, 218
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	2 cut(s)	286, 378
Bse118I	RCCGGY	1 cut(s)	427
Bse3DI	GCAATG	3 cut(s)	271, 314, 476
BseBI	CCWGG	1 cut(s)	219
BseDI	CCNNGG	2 cut(s)	217, 218
BseGI	GGATG	5 cut(s)	154, 186, 229, 276, 357
BseLI	CCNNNNNNNGG	2 cut(s)	286, 378
BseMI	GCAATG	3 cut(s)	271, 314, 476
BseMII	CTCAG	2 cut(s)	167, 455
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	2 cut(s)	437, 452
BsiSI	CCGG	2 cut(s)	329, 428
BslI	CCNNNNNNNGG	2 cut(s)	286, 378
BsmAI	GTCTC	2 cut(s)	68, 294
Bso31I	GGTCTC	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	100, 368
BspACI	CCGC	1 cut(s)	48
BspCNI	CTCAG	2 cut(s)	166, 456
BspLI	GGNNCC	1 cut(s)	370
BspPI	GGATC	2 cut(s)	363, 376
BspTNI	GGTCTC	1 cut(s)	68
BsrDI	GCAATG	3 cut(s)	271, 314, 476
BsrFI	RCCGGY	1 cut(s)	427
BsrGI	TGTACA	1 cut(s)	473
BssAI	RCCGGY	1 cut(s)	427
BssECI	CCNNGG	2 cut(s)	217, 218
BssMI	GATC	2 cut(s)	100, 368
Bst2UI	CCWGG	1 cut(s)	219
BstAPI	GCANNNNNTGC	1 cut(s)	424
BstAUI	TGTACA	1 cut(s)	473
BstC8I	GCNNGC	2 cut(s)	126, 250
BstDEI	CTNAG	2 cut(s)	153, 464
BstF5I	GGATG	5 cut(s)	154, 186, 229, 276, 357
BstKTI	GATC	2 cut(s)	103, 371
BstMAI	GTCTC	2 cut(s)	68, 294
BstMBI	GATC	2 cut(s)	100, 368
BstMWI	GCNNNNNNNGC	4 cut(s)	63, 134, 325, 424
BstNI	CCWGG	1 cut(s)	219
BstNSI	RCATGY	3 cut(s)	128, 168, 252
BstSCI	CCNGG	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	368
BstXI	CCANNNNNNTGG	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	368
BtgZI	GCGATG	1 cut(s)	81
BtsCI	GGATG	5 cut(s)	154, 186, 229, 276, 357
Cac8I	GCNNGC	2 cut(s)	126, 250
Cfr10I	RCCGGY	1 cut(s)	427
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	9 cut(s)	79, 88, 125, 138, 144, 165, 249, 257, 323
CviJI	RGCY	1 cut(s)	214
CviKI_1	RGCY	1 cut(s)	214
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	2 cut(s)	153, 464
DpnI	GATC	2 cut(s)	102, 370
DpnII	GATC	2 cut(s)	100, 368
Eco31I	GGTCTC	1 cut(s)	68
EcoRI	GAATTC	1 cut(s)	382
EcoRII	CCWGG	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	262
FaeI	CATG	9 cut(s)	82, 91, 128, 141, 147, 168, 252, 260, 326
FatI	CATG	9 cut(s)	78, 87, 124, 137, 143, 164, 248, 256, 322
FbaI	TGATCA	1 cut(s)	100
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	48, 135
FokI	GGATG	5 cut(s)	161, 193, 236, 263, 364
Fsp4HI	GCNGC	2 cut(s)	48, 135
GluI	GCNGC	2 cut(s)	48, 135
HapII	CCGG	2 cut(s)	329, 428
Hin1II	CATG	9 cut(s)	82, 91, 128, 141, 147, 168, 252, 260, 326
HincII	GTYRAC	2 cut(s)	40, 84
HindII	GTYRAC	2 cut(s)	40, 84
HinfI	GANTC	2 cut(s)	12, 436
HpaII	CCGG	2 cut(s)	329, 428
Hpy166II	GTNNAC	2 cut(s)	40, 84
Hpy188I	TCNGA	2 cut(s)	17, 299
Hpy188III	TCNNGA	3 cut(s)	115, 155, 203
Hpy8I	GTNNAC	2 cut(s)	40, 84
Hpy99I	CGWCG	2 cut(s)	41, 44
HpyAV	CCTTC	1 cut(s)	404
HpyCH4IV	ACGT	2 cut(s)	42, 107
HpyCH4V	TGCA	7 cut(s)	137, 248, 252, 260, 276, 418, 433
HpyF10VI	GCNNNNNNNGC	4 cut(s)	63, 134, 325, 424
HpyF3I	CTNAG	2 cut(s)	153, 464
HpySE526I	ACGT	2 cut(s)	42, 107
Hsp92II	CATG	9 cut(s)	82, 91, 128, 141, 147, 168, 252, 260, 326
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	100, 368
LmnI	GCTCC	2 cut(s)	7, 219
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	2 cut(s)	139, 285
MaeII	ACGT	2 cut(s)	42, 107
MalI	GATC	2 cut(s)	102, 370
MboI	GATC	2 cut(s)	100, 368
MboII	GAAGA	1 cut(s)	260
MflI	RGATCY	1 cut(s)	368
MluCI	AATT	4 cut(s)	237, 293, 362, 382
MlyI	GAGTC	1 cut(s)	430
MnlI	CCTC	5 cut(s)	22, 111, 325, 330, 459
Mph1103I	ATGCAT	1 cut(s)	262
MseI	TTAA	1 cut(s)	377
MslI	CAYNNNNRTG	1 cut(s)	142
MspI	CCGG	2 cut(s)	329, 428
MspR9I	CCNGG	1 cut(s)	219
MvaI	CCWGG	1 cut(s)	219
MwoI	GCNNNNNNNGC	4 cut(s)	63, 134, 325, 424
NdeII	GATC	2 cut(s)	100, 368
NlaIII	CATG	9 cut(s)	82, 91, 128, 141, 147, 168, 252, 260, 326
NlaIV	GGNNCC	1 cut(s)	370
NsiI	ATGCAT	1 cut(s)	262
NspI	RCATGY	3 cut(s)	128, 168, 252
PaeI	GCATGC	2 cut(s)	128, 252
PasI	CCCWGGG	1 cut(s)	218
PciI	ACATGT	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	12
PkrI	GCNGC	2 cut(s)	49, 136
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PscI	ACATGT	1 cut(s)	164
Psp6I	CCWGG	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	368
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
RseI	CAYNNNNRTG	1 cut(s)	142
SalI	GTCGAC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	377
SatI	GCNGC	2 cut(s)	48, 135
Sau3AI	GATC	2 cut(s)	100, 368
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	219
SetI	ASST	4 cut(s)	45, 110, 122, 216
SfaNI	GCATC	2 cut(s)	139, 285
SgrDI	CGTCGACG	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	142
SmlI	CTYRAG	2 cut(s)	115, 307
SmoI	CTYRAG	2 cut(s)	115, 307
SphI	GCATGC	2 cut(s)	128, 252
Sse9I	AATT	4 cut(s)	237, 293, 362, 382
SsiI	CCGC	1 cut(s)	48
StyD4I	CCNGG	1 cut(s)	217
TaiI	ACGT	2 cut(s)	45, 110
TaqI	TCGA	1 cut(s)	39
TasI	AATT	4 cut(s)	237, 293, 362, 382
TatI	WGTACW	1 cut(s)	473
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	12
Tru1I	TTAA	1 cut(s)	377
Tru9I	TTAA	1 cut(s)	377
TseI	GCWGC	1 cut(s)	134
TspDTI	ATGAA	2 cut(s)	254, 260
XapI	RAATTY	2 cut(s)	293, 382
XceI	RCATGY	3 cut(s)	128, 168, 252
XmiI	GTMKAC	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.