Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0009834

Physical Location & Seq

Genomic Coordinates Forward (+)

2396762 .. 2399205

Gene Structure 2444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0030300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCCTAGACTTGAAGTGGCATGGCATTTAATAAATTCAAATTGTAAGTTATTGATCATTGGTGTTGCACTTGTGGTGATTCTGTTGATCATTCTCATCACCAAACACCCAAAGAATTACCTACACCCAACACGCATAACATCTGGAGCAGCAGCTTTGGTGTTTTCAGCCTTCTACATCATGTACCTGTTTCTCCCTCTGCAATGGATTGGCATGAATGCTATGCTTGTCTACGTTATGGCAGCTGAAGGCATCTTTGCAAGGTTCATCAACGGGTGGTATTACAAGGACCCCCATAATACGCTAATATATTGGATCCAGAAGCACATTTTTGTTGGGATTTGGCATTCAAGGAGAGTAGGCATTCCACTCTATGTAATCTTCGCAAAGATCTTGTTTTGGGGCATTGTCGCTGGCATTTTGCATTGGGGTCTTTACCGAGCTTATTCAGCAGATGCAAGTAAAAGGTGCGCAGGACCTTTTATATACCAAGTCAGAAGCCAACTGACGCCAACCAAGTCAGGACCAAATTTTGTGATGCATTGCAGTACCTCTCTTACGACTTCAGATAAGAACGACAAGGATTTGGATCGGGCGAGTGAGAGGCAGGATCTTGAAGGAAAAGAGCTAAAGCAAGAAACTACTTTGCATGAACTGGAGCTGGTTGCCGTCCATGCTCTTCATGAACTTGTTTCTTTAGTTCACAGTCATGTCAATGCTGCAGGGCAATATGATTTTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005680 GO:0006464 GO:0006807 GO:0007088 GO:0007346 GO:0008150 GO:0008152 GO:0009896 GO:0009987 GO:0010564 GO:0010638 GO:0010965 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0030071 GO:0031331 GO:0031461 GO:0032270 GO:0032436 GO:0032446 GO:0032991 GO:0033043 GO:0033044 GO:0033045 GO:0033047 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045732 GO:0045787 GO:0045840 GO:0045842 GO:0045862 GO:0045931 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051247 GO:0051726 GO:0051781 GO:0051783 GO:0051785 GO:0051983 GO:0051984 GO:0061630 GO:0061659 GO:0062033 GO:0065007 GO:0070647 GO:0071704 GO:0090068 GO:0097602 GO:0140096 GO:1901564 GO:1901800 GO:1901970 GO:1901987 GO:1901989 GO:1901990 GO:1901992 GO:1902099 GO:1902101 GO:1902494 GO:1903052 GO:1903364 GO:1905818 GO:1905820 GO:1990234 GO:2001252

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166

Pfam Domains

Protein Families

zf-ANAPC11

Protein Analysis

247

Amino Acids

28.18

Weight (kDa)

8.89

Isoelectric Point (pI)

29.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05870 AT3G05870 AT3G05870 AT3G05870
fragaria_vesca	FvH4_6g08560
pyrus_communis	pycom09g09480
rosa_laevigata	RLG00000030385
rosa_multiflora	Rmu_sc0031274.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108000
rosa_rugosa	Rorug03G0030300
rosa_samantha	Rh1AG045400 Rh1BG109200 Rh1CG048200 Rh1CG049200 Rh1CG050000 Rh1DG053400 Rh3AG088500 Rh3BG091500 Rh3CG091600
rosa_wichuraiana	Rw0G001050 Rw1G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	472
AccI	GTMKAC	1 cut(s)	231
AclWI	GGATC	4 cut(s)	310, 323, 597, 618
AcsI	RAATTY	2 cut(s)	34, 529
AcuI	CTGAAG	2 cut(s)	267, 549
AcyI	GRCGYC	1 cut(s)	509
AfaI	GTAC	2 cut(s)	185, 550
AgsI	TTSAA	4 cut(s)	14, 39, 351, 617
AluBI	AGCT	5 cut(s)	155, 245, 443, 628, 661
AluI	AGCT	5 cut(s)	155, 245, 443, 628, 661
AlwI	GGATC	4 cut(s)	310, 323, 597, 618
ApeKI	GCWGC	4 cut(s)	149, 152, 242, 719
ApoI	RAATTY	2 cut(s)	34, 529
AspLEI	GCGC	1 cut(s)	473
AspS9I	GGNCC	3 cut(s)	289, 476, 524
AsuHPI	GGTGA	2 cut(s)	88, 91
AvaII	GGWCC	3 cut(s)	289, 476, 524
BamHI	GGATCC	1 cut(s)	315
BbvI	GCAGC	4 cut(s)	161, 164, 254, 706
BceAI	ACGGC	1 cut(s)	653
BclI	TGATCA	2 cut(s)	54, 87
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	1 cut(s)	720
BglII	AGATCT	1 cut(s)	390
BisI	GCNGC	4 cut(s)	150, 153, 243, 720
BlsI	GCNGC	4 cut(s)	151, 154, 244, 721
Bme18I	GGWCC	3 cut(s)	289, 476, 524
BmgT120I	GGNCC	3 cut(s)	289, 476, 524
BmiI	GGNNCC	2 cut(s)	291, 317
BmsI	GCATC	3 cut(s)	261, 445, 528
BpmI	CTGGAG	2 cut(s)	165, 677
BsaBI	GATNNNNATC	1 cut(s)	588
BsaHI	GRCGYC	1 cut(s)	509
Bse1I	ACTGG	1 cut(s)	660
Bse3DI	GCAATG	2 cut(s)	209, 541
Bse8I	GATNNNNATC	1 cut(s)	588
BseJI	GATNNNNATC	1 cut(s)	588
BseMI	GCAATG	2 cut(s)	209, 541
BseNI	ACTGG	1 cut(s)	660
BseXI	GCAGC	4 cut(s)	161, 164, 254, 706
BsmI	GAATGC	3 cut(s)	223, 346, 363
Bsp143I	GATC	6 cut(s)	54, 87, 315, 390, 589, 610
BspHI	TCATGA	1 cut(s)	682
BspLI	GGNNCC	2 cut(s)	291, 317
BspMAI	CTGCAG	1 cut(s)	724
BspPI	GGATC	4 cut(s)	310, 323, 597, 618
BspQI	GCTCTTC	1 cut(s)	684
BsrDI	GCAATG	2 cut(s)	209, 541
BsrI	ACTGG	1 cut(s)	660
BssMI	GATC	6 cut(s)	54, 87, 315, 390, 589, 610
BssNI	GRCGYC	1 cut(s)	509
Bst4CI	ACNGT	1 cut(s)	707
Bst6I	CTCTTC	1 cut(s)	684
BstACI	GRCGYC	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	473
BstKTI	GATC	6 cut(s)	57, 90, 318, 393, 592, 613
BstMBI	GATC	6 cut(s)	54, 87, 315, 390, 589, 610
BstMWI	GCNNNNNNNGC	2 cut(s)	449, 674
BstSFI	CTRYAG	1 cut(s)	720
BstV1I	GCAGC	4 cut(s)	161, 164, 254, 706
BstX2I	RGATCY	3 cut(s)	315, 390, 610
BstYI	RGATCY	3 cut(s)	315, 390, 610
Cac8I	GCNNGC	1 cut(s)	415
CciI	TCATGA	1 cut(s)	682
CfoI	GCGC	1 cut(s)	473
Cfr13I	GGNCC	3 cut(s)	289, 476, 524
CseI	GACGC	1 cut(s)	517
Csp6I	GTAC	2 cut(s)	184, 549
CviAII	CATG	7 cut(s)	21, 181, 214, 650, 674, 683, 710
CviJI	RGCY	7 cut(s)	155, 170, 245, 443, 501, 628, 661
CviKI_1	RGCY	7 cut(s)	155, 170, 245, 443, 501, 628, 661
CviQI	GTAC	2 cut(s)	184, 549
DpnI	GATC	6 cut(s)	56, 89, 317, 392, 591, 612
DpnII	GATC	6 cut(s)	54, 87, 315, 390, 589, 610
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
Eco47I	GGWCC	3 cut(s)	289, 476, 524
Eco57I	CTGAAG	2 cut(s)	267, 549
EcoO109I	RGGNCCY	2 cut(s)	289, 476
EcoT22I	ATGCAT	1 cut(s)	543
FaeI	CATG	7 cut(s)	24, 184, 217, 653, 677, 686, 713
FatI	CATG	7 cut(s)	20, 180, 213, 649, 673, 682, 709
FbaI	TGATCA	2 cut(s)	54, 87
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	150, 153, 243, 720
Fsp4HI	GCNGC	4 cut(s)	150, 153, 243, 720
FspBI	CTAG	1 cut(s)	6
FspI	TGCGCA	1 cut(s)	472
GlaI	GCGC	1 cut(s)	472
GluI	GCNGC	4 cut(s)	150, 153, 243, 720
GsuI	CTGGAG	2 cut(s)	165, 677
HgaI	GACGC	1 cut(s)	517
HhaI	GCGC	1 cut(s)	473
Hin1I	GRCGYC	1 cut(s)	509
Hin1II	CATG	7 cut(s)	24, 184, 217, 653, 677, 686, 713
Hin6I	GCGC	1 cut(s)	471
HinP1I	GCGC	1 cut(s)	471
HinfI	GANTC	1 cut(s)	79
HphI	GGTGA	2 cut(s)	88, 91
Hpy166II	GTNNAC	2 cut(s)	232, 703
Hpy188I	TCNGA	2 cut(s)	497, 568
Hpy188III	TCNNGA	5 cut(s)	144, 319, 522, 614, 683
Hpy8I	GTNNAC	2 cut(s)	232, 703
HpyAV	CCTTC	3 cut(s)	181, 242, 611
HpyCH4III	ACNGT	1 cut(s)	707
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	9 cut(s)	68, 202, 260, 424, 458, 541, 546, 649, 722
HpyF10VI	GCNNNNNNNGC	2 cut(s)	449, 674
HpySE526I	ACGT	1 cut(s)	234
Hsp92I	GRCGYC	1 cut(s)	509
Hsp92II	CATG	7 cut(s)	24, 184, 217, 653, 677, 686, 713
HspAI	GCGC	1 cut(s)	471
Ksp22I	TGATCA	2 cut(s)	54, 87
Kzo9I	GATC	6 cut(s)	54, 87, 315, 390, 589, 610
LguI	GCTCTTC	1 cut(s)	684
LmnI	GCTCC	2 cut(s)	146, 658
Lsp1109I	GCAGC	4 cut(s)	161, 164, 254, 706
LweI	GCATC	3 cut(s)	261, 445, 528
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	234
MalI	GATC	6 cut(s)	56, 89, 317, 392, 591, 612
MboI	GATC	6 cut(s)	54, 87, 315, 390, 589, 610
MboII	GAAGA	2 cut(s)	373, 671
MflI	RGATCY	3 cut(s)	315, 390, 610
MluCI	AATT	4 cut(s)	34, 40, 115, 529
MnlI	CCTC	3 cut(s)	207, 562, 597
Mph1103I	ATGCAT	1 cut(s)	543
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	2 cut(s)	708, 714
MspA1I	CMGCKG	1 cut(s)	245
Mva1269I	GAATGC	3 cut(s)	223, 346, 363
MwoI	GCNNNNNNNGC	2 cut(s)	449, 674
NdeII	GATC	6 cut(s)	54, 87, 315, 390, 589, 610
NlaIII	CATG	7 cut(s)	24, 184, 217, 653, 677, 686, 713
NlaIV	GGNNCC	2 cut(s)	291, 317
NsbI	TGCGCA	1 cut(s)	472
NsiI	ATGCAT	1 cut(s)	543
PagI	TCATGA	1 cut(s)	682
PciSI	GCTCTTC	1 cut(s)	684
PctI	GAATGC	3 cut(s)	223, 346, 363
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	4 cut(s)	151, 154, 244, 721
PpuMI	RGGWCCY	2 cut(s)	289, 476
Psp5II	RGGWCCY	2 cut(s)	289, 476
PspN4I	GGNNCC	2 cut(s)	291, 317
PspPI	GGNCC	3 cut(s)	289, 476, 524
PspPPI	RGGWCCY	2 cut(s)	289, 476
PstI	CTGCAG	1 cut(s)	724
PsuI	RGATCY	3 cut(s)	315, 390, 610
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	185, 550
RsaNI	GTAC	2 cut(s)	184, 549
RseI	CAYNNNNRTG	2 cut(s)	708, 714
SapI	GCTCTTC	1 cut(s)	684
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	4 cut(s)	150, 153, 243, 720
Sau3AI	GATC	6 cut(s)	54, 87, 315, 390, 589, 610
Sau96I	GGNCC	3 cut(s)	289, 476, 524
SfaNI	GCATC	3 cut(s)	261, 445, 528
SfcI	CTRYAG	1 cut(s)	720
SinI	GGWCC	3 cut(s)	289, 476, 524
SmiMI	CAYNNNNRTG	2 cut(s)	708, 714
Sse9I	AATT	4 cut(s)	34, 40, 115, 529
SspMI	CTAG	1 cut(s)	6
TaaI	ACNGT	1 cut(s)	707
TaiI	ACGT	1 cut(s)	237
TasI	AATT	4 cut(s)	34, 40, 115, 529
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TseI	GCWGC	4 cut(s)	149, 152, 242, 719
TspDTI	ATGAA	5 cut(s)	230, 256, 666, 671, 699
VpaK11BI	GGWCC	3 cut(s)	289, 476, 524
XapI	RAATTY	2 cut(s)	34, 529
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	1 cut(s)	6
Zsp2I	ATGCAT	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.