Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031274.1

Orthogroup ID

OG0009834

Physical Location & Seq

Genomic Coordinates Reverse (-)

716 .. 4225

Gene Structure 3510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031274.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

atgctgttgctgcatggacatgggatgctcaggatgaaacatgtggcatttgatggttgttgtcctgattgtaagctccctggggatgattgcccactaacatgggatgttctcataatatggttgccaaagccatccaagaacatggctcttgaaagtagtcctccggagcaacattctattccagagctgcattctcctccagaacagtgctgtcctcaagaacagcaactagttgactcggatctcttttcttcagattatgatgggggctttctagacagtctttcatacctctatagctctgatgatgaggtaaccatcgattgtacatctgaggcagagacaaaacttatgtcgtcggttaaaatgggaaaaatggtaggtattgactcgtcacttgttgatttgactgatttcatatcagctgctcaaatttcaaaggcagaagatggccatcttccccttgaagagatgcgtacacatctgcggagtgagtatcctgagaagaataaatggaaactttgtgaatcttcattgctgaaaaggaaaaggattacgggacatggaaaccagatcataggggaagatgctggtgcaattcatctcccaaatccaatgaatgggtttgggactccagctgaactctgtcaaatccacagaagtcttccaaaggcggccacaggacctccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

231

Amino Acids

25.47

Weight (kDa)

5.03

Isoelectric Point (pI)

54.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05870 AT3G05870 AT3G05870 AT3G05870
fragaria_vesca	FvH4_6g08560
pyrus_communis	pycom09g09480
rosa_laevigata	RLG00000030385
rosa_multiflora	Rmu_sc0031274.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108000
rosa_rugosa	Rorug03G0030300
rosa_samantha	Rh1AG045400 Rh1BG109200 Rh1CG048200 Rh1CG049200 Rh1CG050000 Rh1DG053400 Rh3AG088500 Rh3BG091500 Rh3CG091600
rosa_wichuraiana	Rw0G001050 Rw1G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	623
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	2 cut(s)	490, 677
AclWI	GGATC	1 cut(s)	252
AcoI	YGGCCR	2 cut(s)	454, 678
AcsI	RAATTY	1 cut(s)	435
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	2 cut(s)	331, 481
AfiI	CCNNNNNNNGG	1 cut(s)	623
AflIII	ACRYGT	1 cut(s)	40
AgsI	TTSAA	3 cut(s)	155, 441, 470
AhlI	ACTAGT	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	5 cut(s)	76, 190, 303, 428, 641
AluI	AGCT	5 cut(s)	76, 190, 303, 428, 641
Alw26I	GTCTC	1 cut(s)	338
AlwI	GGATC	1 cut(s)	252
Aor13HI	TCCGGA	1 cut(s)	166
AoxI	GGCC	2 cut(s)	454, 678
ApeKI	GCWGC	3 cut(s)	10, 190, 428
ApoI	RAATTY	1 cut(s)	435
ArsI	GACNNNNNNTTYG	2 cut(s)	341, 373
AspS9I	GGNCC	1 cut(s)	686
AvaII	GGWCC	1 cut(s)	686
BalI	TGGCCA	1 cut(s)	456
BbsI	GAAGAC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	177, 415
BccI	CCATC	6 cut(s)	47, 142, 260, 329, 446, 465
BciT130I	CCWGG	1 cut(s)	81
BciVI	GTATCC	1 cut(s)	510
BcoDI	GTCTC	1 cut(s)	338
BcuI	ACTAGT	1 cut(s)	232
BfaI	CTAG	2 cut(s)	233, 278
BfmI	CTRYAG	1 cut(s)	298
BfuI	GTATCC	1 cut(s)	510
BisI	GCNGC	4 cut(s)	11, 191, 429, 678
BlsI	GCNGC	4 cut(s)	12, 192, 430, 679
Bme1390I	CCNGG	1 cut(s)	81
Bme18I	GGWCC	1 cut(s)	686
BmgT120I	GGNCC	1 cut(s)	686
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	3 cut(s)	15, 465, 580
BpiI	GAAGAC	1 cut(s)	659
BpmI	CTGGAG	2 cut(s)	186, 621
Bpu10I	CCTNAGC	1 cut(s)	29
BpuEI	CTTGAG	1 cut(s)	204
Bsa29I	ATCGAT	1 cut(s)	324
BsaBI	GATNNNNATC	1 cut(s)	456
BsaJI	CCNNGG	2 cut(s)	79, 80
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	1 cut(s)	673
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse3DI	GCAATG	1 cut(s)	536
Bse8I	GATNNNNATC	1 cut(s)	456
BseAI	TCCGGA	1 cut(s)	166
BseBI	CCWGG	1 cut(s)	81
BseCI	ATCGAT	1 cut(s)	324
BseDI	CCNNGG	2 cut(s)	79, 80
BseGI	GGATG	5 cut(s)	30, 39, 91, 112, 134
BseJI	GATNNNNATC	1 cut(s)	456
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMI	GCAATG	1 cut(s)	536
BseMII	CTCAG	3 cut(s)	43, 327, 495
BseRI	GAGGAG	1 cut(s)	189
BseXI	GCAGC	2 cut(s)	177, 415
BshFI	GGCC	2 cut(s)	456, 680
BshVI	ATCGAT	1 cut(s)	324
BsiSI	CCGG	1 cut(s)	167
BslFI	GGGAC	2 cut(s)	576, 646
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	1 cut(s)	338
BsmFI	GGGAC	2 cut(s)	576, 646
BsmI	GAATGC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	456, 680
Bsp13I	TCCGGA	1 cut(s)	166
Bsp1407I	TGTACA	1 cut(s)	329
Bsp143I	GATC	2 cut(s)	244, 576
BspACI	CCGC	2 cut(s)	490, 677
BspANI	GGCC	2 cut(s)	456, 680
BspCNI	CTCAG	3 cut(s)	42, 328, 496
BspDI	ATCGAT	1 cut(s)	324
BspEI	TCCGGA	1 cut(s)	166
BspPI	GGATC	1 cut(s)	252
BsrDI	GCAATG	1 cut(s)	536
BsrGI	TGTACA	1 cut(s)	329
BssECI	CCNNGG	2 cut(s)	79, 80
BssMI	GATC	2 cut(s)	244, 576
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	2 cut(s)	210, 284
Bst6I	CTCTTC	1 cut(s)	465
BstAUI	TGTACA	1 cut(s)	329
BstDEI	CTNAG	4 cut(s)	29, 336, 504, 693
BstEII	GGTNACC	1 cut(s)	316
BstF5I	GGATG	5 cut(s)	30, 39, 91, 112, 134
BstKTI	GATC	2 cut(s)	247, 579
BstMAI	GTCTC	1 cut(s)	338
BstMBI	GATC	2 cut(s)	244, 576
BstMWI	GCNNNNNNNGC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	81
BstNSI	RCATGY	1 cut(s)	44
BstPI	GGTNACC	1 cut(s)	316
BstSCI	CCNGG	1 cut(s)	79
BstSFI	CTRYAG	1 cut(s)	298
BstV1I	GCAGC	2 cut(s)	177, 415
BstV2I	GAAGAC	1 cut(s)	659
BstX2I	RGATCY	1 cut(s)	244
BstXI	CCANNNNNNTGG	2 cut(s)	102, 145
BstYI	RGATCY	1 cut(s)	244
Bsu15I	ATCGAT	1 cut(s)	324
BsuI	GTATCC	1 cut(s)	510
BsuRI	GGCC	2 cut(s)	456, 680
BsuTUI	ATCGAT	1 cut(s)	324
BtsCI	GGATG	5 cut(s)	30, 39, 91, 112, 134
BtsIMutI	CAGTG	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	686
ClaI	ATCGAT	1 cut(s)	324
Csp6I	GTAC	2 cut(s)	330, 480
CviAII	CATG	6 cut(s)	14, 20, 41, 102, 145, 566
CviQI	GTAC	2 cut(s)	330, 480
DdeI	CTNAG	4 cut(s)	29, 336, 504, 693
DpnI	GATC	2 cut(s)	246, 578
DpnII	GATC	2 cut(s)	244, 576
EaeI	YGGCCR	2 cut(s)	454, 678
Eam1104I	CTCTTC	1 cut(s)	465
EarI	CTCTTC	1 cut(s)	465
Eco47I	GGWCC	1 cut(s)	686
Eco57I	CTGAAG	1 cut(s)	240
Eco91I	GGTNACC	1 cut(s)	316
EcoO109I	RGGNCCY	1 cut(s)	686
EcoO65I	GGTNACC	1 cut(s)	316
EcoRII	CCWGG	1 cut(s)	79
FaeI	CATG	6 cut(s)	17, 23, 44, 105, 148, 569
FaqI	GGGAC	2 cut(s)	576, 646
FatI	CATG	6 cut(s)	13, 19, 40, 101, 144, 565
Fnu4HI	GCNGC	4 cut(s)	11, 191, 429, 678
FokI	GGATG	5 cut(s)	37, 46, 98, 119, 121
Fsp4HI	GCNGC	4 cut(s)	11, 191, 429, 678
FspBI	CTAG	2 cut(s)	233, 278
GluI	GCNGC	4 cut(s)	11, 191, 429, 678
GsuI	CTGGAG	2 cut(s)	186, 621
HaeIII	GGCC	2 cut(s)	456, 680
HapII	CCGG	1 cut(s)	167
Hin1II	CATG	6 cut(s)	17, 23, 44, 105, 148, 569
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	4 cut(s)	239, 392, 530, 634
HpaII	CCGG	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	238, 482
Hpy188I	TCNGA	4 cut(s)	244, 259, 307, 337
Hpy188III	TCNNGA	9 cut(s)	31, 65, 152, 167, 185, 203, 221, 278, 503
Hpy8I	GTNNAC	2 cut(s)	238, 482
Hpy99I	CGWCG	1 cut(s)	364
HpyCH4III	ACNGT	2 cut(s)	210, 284
HpyCH4V	TGCA	3 cut(s)	13, 193, 599
HpyF10VI	GCNNNNNNNGC	1 cut(s)	10
HpyF3I	CTNAG	4 cut(s)	29, 336, 504, 693
Hsp92II	CATG	6 cut(s)	17, 23, 44, 105, 148, 569
Kpn2I	TCCGGA	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	244, 576
LmnI	GCTCC	2 cut(s)	81, 169
Lsp1109I	GCAGC	2 cut(s)	177, 415
LweI	GCATC	3 cut(s)	15, 465, 580
MaeI	CTAG	2 cut(s)	233, 278
MaeIII	GTNAC	2 cut(s)	316, 396
MalI	GATC	2 cut(s)	246, 578
MboI	GATC	2 cut(s)	244, 576
MboII	GAAGA	8 cut(s)	246, 452, 461, 482, 520, 525, 599, 659
MflI	RGATCY	1 cut(s)	244
MlsI	TGGCCA	1 cut(s)	456
MluCI	AATT	2 cut(s)	435, 600
MluNI	TGGCCA	1 cut(s)	456
MlyI	GAGTC	3 cut(s)	233, 386, 628
MnlI	CCTC	6 cut(s)	174, 210, 228, 305, 307, 331
Mox20I	TGGCCA	1 cut(s)	456
MroI	TCCGGA	1 cut(s)	166
MscI	TGGCCA	1 cut(s)	456
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	2 cut(s)	18, 100
Msp20I	TGGCCA	1 cut(s)	456
MspA1I	CMGCKG	2 cut(s)	428, 641
MspI	CCGG	1 cut(s)	167
MspR9I	CCNGG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	193
MvaI	CCWGG	1 cut(s)	81
MwoI	GCNNNNNNNGC	1 cut(s)	10
NdeII	GATC	2 cut(s)	244, 576
NlaIII	CATG	6 cut(s)	17, 23, 44, 105, 148, 569
NmuCI	GTSAC	1 cut(s)	396
NspI	RCATGY	1 cut(s)	44
PasI	CCCWGGG	1 cut(s)	80
PciI	ACATGT	1 cut(s)	40
PctI	GAATGC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	530
PflMI	CCANNNNNTGG	1 cut(s)	623
PkrI	GCNGC	4 cut(s)	12, 192, 430, 679
PleI	GAGTC	3 cut(s)	233, 386, 628
PpsI	GAGTC	3 cut(s)	233, 386, 628
PpuMI	RGGWCCY	1 cut(s)	686
PscI	ACATGT	1 cut(s)	40
Psp5II	RGGWCCY	1 cut(s)	686
Psp6I	CCWGG	1 cut(s)	79
PspEI	GGTNACC	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	686
PspPPI	RGGWCCY	1 cut(s)	686
PsuI	RGATCY	1 cut(s)	244
PvuII	CAGCTG	2 cut(s)	428, 641
RsaI	GTAC	2 cut(s)	331, 481
RsaNI	GTAC	2 cut(s)	330, 480
RseI	CAYNNNNRTG	2 cut(s)	18, 100
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	4 cut(s)	11, 191, 429, 678
Sau3AI	GATC	2 cut(s)	244, 576
Sau96I	GGNCC	1 cut(s)	686
SchI	GAGTC	3 cut(s)	233, 386, 628
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	9 cut(s)	78, 192, 297, 305, 318, 388, 430, 643, 691
SfaNI	GCATC	3 cut(s)	15, 465, 580
SfcI	CTRYAG	1 cut(s)	298
SinI	GGWCC	1 cut(s)	686
SmiMI	CAYNNNNRTG	2 cut(s)	18, 100
SmlI	CTYRAG	1 cut(s)	219
SmoI	CTYRAG	1 cut(s)	219
SpeI	ACTAGT	1 cut(s)	232
Sse9I	AATT	2 cut(s)	435, 600
SsiI	CCGC	2 cut(s)	490, 677
SspMI	CTAG	2 cut(s)	233, 278
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	210, 284
TaqI	TCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	435, 600
TatI	WGTACW	1 cut(s)	329
TauI	GCSGC	1 cut(s)	680
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	215
TseFI	GTSAC	1 cut(s)	396
TseI	GCWGC	3 cut(s)	10, 190, 428
Tsp45I	GTSAC	1 cut(s)	396
TspDTI	ATGAA	6 cut(s)	50, 279, 409, 525, 593, 635
TspRI	CASTG	1 cut(s)	215
Van91I	CCANNNNNTGG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	686
XapI	RAATTY	1 cut(s)	435
XbaI	TCTAGA	1 cut(s)	277
XceI	RCATGY	1 cut(s)	44
XspI	CTAG	2 cut(s)	233, 278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.