Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0009834

Physical Location & Seq

Genomic Coordinates Forward (+)

9005519 .. 9007868

Gene Structure 2350 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG048200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGTATGGAAGCGATGGGGAGACCATGTTGTAGACCAAGTAATGGTGAAGCGAATCGGAAATCGGAGTCGTTGCCACGTGGTCCCCTGCCGGTTTTCTTGGAGCGATTTGAAGAGTCTTGAGGATGGGACTGTGTTGAGGACTAATCTGCAAGGGTTTATGATCAATGGGGTCTCGGTGATTACGTCAGTTGATAACAGCTCCGGTGAGGATGAGAGTGCCGGGCTTGATATTCGTGCCTTTTGCTTTCACTGCGTGGTAATGCTTGTCTTTATTTTTGGTGGCATGCTGTTGCTGCATGGACATGGGATGCTCAGGACGAAACATGTGGCATTTGGAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAGCTCCCTGGGGATGATTGCCCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

132

Amino Acids

14.71

Weight (kDa)

8.49

Isoelectric Point (pI)

32.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05870 AT3G05870 AT3G05870 AT3G05870
fragaria_vesca	FvH4_6g08560
pyrus_communis	pycom09g09480
rosa_laevigata	RLG00000030385
rosa_multiflora	Rmu_sc0031274.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108000
rosa_rugosa	Rorug03G0030300
rosa_samantha	Rh1AG045400 Rh1BG109200 Rh1CG048200 Rh1CG049200 Rh1CG050000 Rh1DG053400 Rh3AG088500 Rh3BG091500 Rh3CG091600
rosa_wichuraiana	Rw0G001050 Rw1G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	43
AccI	GTMKAC	1 cut(s)	33
AcvI	CACGTG	1 cut(s)	79
AdeI	CACNNNGTG	1 cut(s)	256
AfiI	CCNNNNNNNGG	1 cut(s)	43
AflIII	ACRYGT	1 cut(s)	325
AgsI	TTSAA	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	2 cut(s)	201, 375
AluI	AGCT	2 cut(s)	201, 375
Alw26I	GTCTC	2 cut(s)	15, 178
ApeKI	GCWGC	1 cut(s)	295
AspS9I	GGNCC	1 cut(s)	82
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	3 cut(s)	58, 190, 218
AvaII	GGWCC	1 cut(s)	82
BbrPI	CACGTG	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	4 cut(s)	9, 119, 336, 346
BciT130I	CCWGG	1 cut(s)	380
BclI	TGATCA	1 cut(s)	162
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	15, 178
BisI	GCNGC	1 cut(s)	296
BlsI	GCNGC	1 cut(s)	297
Bme1390I	CCNGG	2 cut(s)	223, 380
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	223, 380
BmsI	GCATC	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	314
BpuEI	CTTGAG	1 cut(s)	140
BpuMI	CCSGG	1 cut(s)	223
BsaAI	YACGTR	1 cut(s)	79
BsaI	GGTCTC	2 cut(s)	15, 178
BsaJI	CCNNGG	2 cut(s)	378, 379
BsaWI	WCCGGW	1 cut(s)	203
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	1 cut(s)	43
Bse118I	RCCGGY	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	380
BseDI	CCNNGG	2 cut(s)	378, 379
BseGI	GGATG	5 cut(s)	130, 217, 315, 347, 390
BseLI	CCNNNNNNNGG	1 cut(s)	43
BseMII	CTCAG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	282
BsiSI	CCGG	3 cut(s)	91, 204, 222
BslFI	GGGAC	2 cut(s)	68, 142
BslI	CCNNNNNNNGG	1 cut(s)	43
BsmAI	GTCTC	2 cut(s)	15, 178
BsmFI	GGGAC	2 cut(s)	68, 142
Bso31I	GGTCTC	2 cut(s)	15, 178
Bsp143I	GATC	1 cut(s)	162
BspCNI	CTCAG	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	84
BspTNI	GGTCTC	2 cut(s)	15, 178
BsrFI	RCCGGY	1 cut(s)	90
BssAI	RCCGGY	1 cut(s)	90
BssECI	CCNNGG	2 cut(s)	378, 379
BssMI	GATC	1 cut(s)	162
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	107
BstBAI	YACGTR	1 cut(s)	79
BstC8I	GCNNGC	1 cut(s)	287
BstDEI	CTNAG	1 cut(s)	314
BstF5I	GGATG	5 cut(s)	130, 217, 315, 347, 390
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	2 cut(s)	15, 178
BstMBI	GATC	1 cut(s)	162
BstMWI	GCNNNNNNNGC	2 cut(s)	252, 295
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	2 cut(s)	289, 329
BstSCI	CCNGG	2 cut(s)	221, 378
BstV1I	GCAGC	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	5 cut(s)	130, 217, 315, 347, 390
BtsI	GCAGTG	1 cut(s)	250
BtsIMutI	CAGTG	1 cut(s)	250
Cac8I	GCNNGC	1 cut(s)	287
Cfr10I	RCCGGY	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	82
CviAII	CATG	5 cut(s)	26, 286, 299, 305, 326
CviJI	RGCY	3 cut(s)	201, 226, 375
CviKI_1	RGCY	3 cut(s)	201, 226, 375
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
DraIII	CACNNNGTG	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	107
EarI	CTCTTC	1 cut(s)	107
Eco31I	GGTCTC	2 cut(s)	15, 178
Eco47I	GGWCC	1 cut(s)	82
Eco72I	CACGTG	1 cut(s)	79
EcoRII	CCWGG	1 cut(s)	378
FaeI	CATG	5 cut(s)	29, 289, 302, 308, 329
FaiI	YATR	7 cut(s)	7, 27, 161, 287, 300, 306, 327
FaqI	GGGAC	2 cut(s)	68, 142
FatI	CATG	5 cut(s)	25, 285, 298, 304, 325
FbaI	TGATCA	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	296
FokI	GGATG	4 cut(s)	137, 224, 322, 354
Fsp4HI	GCNGC	1 cut(s)	296
GluI	GCNGC	1 cut(s)	296
HapII	CCGG	3 cut(s)	91, 204, 222
Hin1II	CATG	5 cut(s)	29, 289, 302, 308, 329
HinfI	GANTC	3 cut(s)	54, 67, 115
HpaII	CCGG	3 cut(s)	91, 204, 222
HphI	GGTGA	3 cut(s)	58, 190, 218
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	59, 66
Hpy188III	TCNNGA	3 cut(s)	119, 316, 364
Hpy8I	GTNNAC	1 cut(s)	34
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	2 cut(s)	78, 185
HpyCH4V	TGCA	2 cut(s)	151, 298
HpyF10VI	GCNNNNNNNGC	2 cut(s)	252, 295
HpyF3I	CTNAG	1 cut(s)	314
HpySE526I	ACGT	2 cut(s)	78, 185
Hsp92II	CATG	5 cut(s)	29, 289, 302, 308, 329
Ksp22I	TGATCA	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	162
LmnI	GCTCC	3 cut(s)	102, 206, 380
LpnPI	CCDG	8 cut(s)	100, 104, 217, 235, 301, 365, 377, 392
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	300
MaeII	ACGT	2 cut(s)	78, 185
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	1 cut(s)	124
MlyI	GAGTC	2 cut(s)	76, 124
MnlI	CCTC	4 cut(s)	115, 132, 202, 332
MslI	CAYNNNNRTG	1 cut(s)	303
MspI	CCGG	3 cut(s)	91, 204, 222
MspR9I	CCNGG	2 cut(s)	223, 380
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	2 cut(s)	252, 295
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	1 cut(s)	162
NlaIII	CATG	5 cut(s)	29, 289, 302, 308, 329
NlaIV	GGNNCC	1 cut(s)	84
NspI	RCATGY	2 cut(s)	289, 329
PaeI	GCATGC	1 cut(s)	289
PasI	CCCWGGG	1 cut(s)	379
PciI	ACATGT	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	54
PflMI	CCANNNNNTGG	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	297
PleI	GAGTC	2 cut(s)	75, 123
PmaCI	CACGTG	1 cut(s)	79
PmlI	CACGTG	1 cut(s)	79
PpsI	GAGTC	2 cut(s)	75, 123
Ppu21I	YACGTR	1 cut(s)	79
PscI	ACATGT	1 cut(s)	325
Psp6I	CCWGG	1 cut(s)	378
PspCI	CACGTG	1 cut(s)	79
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	82
RseI	CAYNNNNRTG	1 cut(s)	303
SatI	GCNGC	1 cut(s)	296
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	1 cut(s)	82
SchI	GAGTC	2 cut(s)	76, 124
ScrFI	CCNGG	2 cut(s)	223, 380
SetI	ASST	4 cut(s)	81, 188, 203, 377
SfaNI	GCATC	1 cut(s)	300
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	303
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
SphI	GCATGC	1 cut(s)	289
StyD4I	CCNGG	2 cut(s)	221, 378
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	2 cut(s)	81, 188
TfiI	GAWTC	1 cut(s)	54
TscAI	CASTG	1 cut(s)	257
TseI	GCWGC	1 cut(s)	295
TspRI	CASTG	1 cut(s)	257
Van91I	CCANNNNNTGG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	82
XceI	RCATGY	2 cut(s)	289, 329
XmiI	GTMKAC	1 cut(s)	33

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.