Rh1AG045400

fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0009834
Physical Location & Seq
Forward (+)
7762852 .. 7764911
2060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG045400.1

Sequence Viewer

Length: 288 bp
ATGGTGAAGCGAATCGGAAATGGGAGTCGTTGCCACGTGGTCCCCTGCCGGTTTTCTTGGAGCGATTCGAAGAGTCTTGAGGATGGGACTGTGTTGAGGACTAATCTGCAAGGGTTTATGATCAATGGGGTCTCGGTGATTACGTCAGTTGATAACAGCTCCGGTGAGGATGAGAGTGCCGGGCTTGATATTCGTGCCTTTTGCTTTCACTGCGTGGTGGCATGCTGTTGCTGCATGGACATGGGATGCTCAGGACGAAACATGTGGCATTTGGAGGATGGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

95

Amino Acids

10.35

Weight (kDa)

5.42

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcvI CACGTG 1 cut(s) 37
AdeI CACNNNGTG 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 261
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Alw26I GTCTC 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 40
AsuC2I CCSGG 1 cut(s) 181
AsuHPI GGTGA 3 cut(s) 16, 148, 176
AsuII TTCGAA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 40
BbrPI CACGTG 1 cut(s) 37
BbvI GCAGC 1 cut(s) 218
BccI CCATC 2 cut(s) 77, 272
BclI TGATCA 1 cut(s) 120
BcnI CCSGG 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 136
BisI GCNGC 1 cut(s) 232
BlsI GCNGC 1 cut(s) 233
Bme1390I CCNGG 1 cut(s) 181
Bme18I GGWCC 1 cut(s) 40
BmgT120I GGNCC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 42
BmrFI CCNGG 1 cut(s) 181
BmsI GCATC 1 cut(s) 236
Bpu10I CCTNAGC 1 cut(s) 250
Bpu14I TTCGAA 1 cut(s) 68
BpuEI CTTGAG 1 cut(s) 98
BpuMI CCSGG 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 37
BsaI GGTCTC 1 cut(s) 136
BsaWI WCCGGW 1 cut(s) 161
Bse118I RCCGGY 1 cut(s) 48
BseGI GGATG 4 cut(s) 88, 175, 251, 283
BseMII CTCAG 1 cut(s) 264
BseXI GCAGC 1 cut(s) 218
BsiSI CCGG 3 cut(s) 49, 162, 180
BslFI GGGAC 2 cut(s) 26, 100
BsmAI GTCTC 1 cut(s) 136
BsmFI GGGAC 2 cut(s) 26, 100
Bso31I GGTCTC 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 68
Bsp143I GATC 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 68
BspTNI GGTCTC 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 48
BssMI GATC 1 cut(s) 120
Bst4CI ACNGT 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 65
BstBAI YACGTR 1 cut(s) 37
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 250
BstF5I GGATG 4 cut(s) 88, 175, 251, 283
BstKTI GATC 1 cut(s) 123
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 1 cut(s) 120
BstMWI GCNNNNNNNGC 2 cut(s) 210, 231
BstNSI RCATGY 2 cut(s) 225, 265
BstSCI CCNGG 1 cut(s) 179
BstV1I GCAGC 1 cut(s) 218
BtsCI GGATG 4 cut(s) 88, 175, 251, 283
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 208
Cac8I GCNNGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 40
CviAII CATG 4 cut(s) 222, 235, 241, 262
CviJI RGCY 2 cut(s) 159, 184
CviKI_1 RGCY 2 cut(s) 159, 184
DdeI CTNAG 1 cut(s) 250
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
DraIII CACNNNGTG 1 cut(s) 214
Eam1104I CTCTTC 1 cut(s) 65
EarI CTCTTC 1 cut(s) 65
Eco31I GGTCTC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 40
Eco72I CACGTG 1 cut(s) 37
FaeI CATG 4 cut(s) 225, 238, 244, 265
FaiI YATR 5 cut(s) 119, 223, 236, 242, 263
FaqI GGGAC 2 cut(s) 26, 100
FatI CATG 4 cut(s) 221, 234, 240, 261
FbaI TGATCA 1 cut(s) 120
Fnu4HI GCNGC 1 cut(s) 232
FokI GGATG 3 cut(s) 95, 182, 258
Fsp4HI GCNGC 1 cut(s) 232
GluI GCNGC 1 cut(s) 232
HapII CCGG 3 cut(s) 49, 162, 180
Hin1II CATG 4 cut(s) 225, 238, 244, 265
HinfI GANTC 4 cut(s) 12, 25, 65, 73
HpaII CCGG 3 cut(s) 49, 162, 180
HphI GGTGA 3 cut(s) 16, 148, 176
Hpy188I TCNGA 1 cut(s) 17
Hpy188III TCNNGA 2 cut(s) 77, 252
HpyCH4III ACNGT 1 cut(s) 91
HpyCH4IV ACGT 2 cut(s) 36, 143
HpyCH4V TGCA 2 cut(s) 109, 234
HpyF10VI GCNNNNNNNGC 2 cut(s) 210, 231
HpyF3I CTNAG 1 cut(s) 250
HpySE526I ACGT 2 cut(s) 36, 143
Hsp92II CATG 4 cut(s) 225, 238, 244, 265
Ksp22I TGATCA 1 cut(s) 120
Kzo9I GATC 1 cut(s) 120
LmnI GCTCC 2 cut(s) 60, 164
LpnPI CCDG 5 cut(s) 58, 62, 175, 193, 237
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 236
MaeII ACGT 2 cut(s) 36, 143
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 1 cut(s) 82
MlyI GAGTC 2 cut(s) 34, 82
MnlI CCTC 4 cut(s) 73, 90, 160, 268
MslI CAYNNNNRTG 1 cut(s) 239
MspI CCGG 3 cut(s) 49, 162, 180
MspR9I CCNGG 1 cut(s) 181
MwoI GCNNNNNNNGC 2 cut(s) 210, 231
NciI CCSGG 1 cut(s) 181
NdeII GATC 1 cut(s) 120
NlaIII CATG 4 cut(s) 225, 238, 244, 265
NlaIV GGNNCC 1 cut(s) 42
NspI RCATGY 2 cut(s) 225, 265
NspV TTCGAA 1 cut(s) 68
PaeI GCATGC 1 cut(s) 225
PciI ACATGT 1 cut(s) 261
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PfeI GAWTC 2 cut(s) 12, 65
PkrI GCNGC 1 cut(s) 233
PleI GAGTC 2 cut(s) 33, 81
PmaCI CACGTG 1 cut(s) 37
PmlI CACGTG 1 cut(s) 37
PpsI GAGTC 2 cut(s) 33, 81
Ppu21I YACGTR 1 cut(s) 37
PscI ACATGT 1 cut(s) 261
PspCI CACGTG 1 cut(s) 37
PspN4I GGNNCC 1 cut(s) 42
PspPI GGNCC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 239
SatI GCNGC 1 cut(s) 232
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 1 cut(s) 40
SchI GAGTC 2 cut(s) 34, 82
ScrFI CCNGG 1 cut(s) 181
SetI ASST 3 cut(s) 39, 146, 161
SfaNI GCATC 1 cut(s) 236
SfuI TTCGAA 1 cut(s) 68
SinI GGWCC 1 cut(s) 40
SmiMI CAYNNNNRTG 1 cut(s) 239
SmlI CTYRAG 1 cut(s) 77
SmoI CTYRAG 1 cut(s) 77
SphI GCATGC 1 cut(s) 225
StyD4I CCNGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 91
TaiI ACGT 2 cut(s) 39, 146
TaqI TCGA 1 cut(s) 68
TfiI GAWTC 2 cut(s) 12, 65
TscAI CASTG 1 cut(s) 215
TseI GCWGC 1 cut(s) 231
TspRI CASTG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 40
XceI RCATGY 2 cut(s) 225, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.