Rh1CG050000

Anaphase-promoting complex subunit 11 RING-H2 finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0009834
Physical Location & Seq
Forward (+)
9236109 .. 9238130
2022 bp
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UTR
Exon/CDS
Intron
Rh1CG050000.1

Sequence Viewer

Length: 189 bp
ATGATAGCAATCAAGAGTGGAACTTGCAATGAGAATACTACTCTTACGGATATTCACGAGTGGCATGCTGTTGCTGCATGGACATGGGATGCTCAGGACGAAACATGTCGCATTTGGAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAGCTCCCTGGGGATGATTGCCCACTAATCCAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
zf-ANAPC11

Protein Analysis

62

Amino Acids

6.96

Weight (kDa)

4.37

Isoelectric Point (pI)

18.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-ANAPC11 PF12861 33 - 62 1.2e-11 Anaphase-promoting complex subunit 11 RING-H2 finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 104
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 1 cut(s) 154
AluI AGCT 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 74
BauI CACGAG 1 cut(s) 56
BbvI GCAGC 1 cut(s) 61
BccI CCATC 2 cut(s) 115, 125
BcgI CGANNNNNNTGC 2 cut(s) 47, 81
BciT130I CCWGG 1 cut(s) 159
BisI GCNGC 1 cut(s) 75
BlsI GCNGC 1 cut(s) 76
Bme1390I CCNGG 1 cut(s) 159
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 79
Bpu10I CCTNAGC 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 3 cut(s) 157, 158, 181
Bse3DI GCAATG 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 3 cut(s) 157, 158, 181
BseGI GGATG 3 cut(s) 94, 126, 169
BseJI GATNNNNATC 1 cut(s) 8
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 61
BspCNI CTCAG 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 34
BssECI CCNNGG 3 cut(s) 157, 158, 181
BssSI CACGAG 1 cut(s) 56
BssT1I CCWWGG 1 cut(s) 181
Bst2BI CACGAG 1 cut(s) 56
Bst2UI CCWGG 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 66
BstDEI CTNAG 1 cut(s) 93
BstF5I GGATG 3 cut(s) 94, 126, 169
BstMWI GCNNNNNNNGC 1 cut(s) 74
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 2 cut(s) 68, 108
BstSCI CCNGG 1 cut(s) 157
BstV1I GCAGC 1 cut(s) 61
BtsCI GGATG 3 cut(s) 94, 126, 169
Cac8I GCNNGC 1 cut(s) 66
CviAII CATG 4 cut(s) 65, 78, 84, 105
CviJI RGCY 1 cut(s) 154
CviKI_1 RGCY 1 cut(s) 154
DdeI CTNAG 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 181
ErhI CCWWGG 1 cut(s) 181
FaeI CATG 4 cut(s) 68, 81, 87, 108
FaiI YATR 4 cut(s) 66, 79, 85, 106
FatI CATG 4 cut(s) 64, 77, 83, 104
Fnu4HI GCNGC 1 cut(s) 75
FokI GGATG 3 cut(s) 101, 133, 176
Fsp4HI GCNGC 1 cut(s) 75
GluI GCNGC 1 cut(s) 75
Hin1II CATG 4 cut(s) 68, 81, 87, 108
Hpy188III TCNNGA 4 cut(s) 13, 56, 95, 143
HpyCH4V TGCA 2 cut(s) 27, 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 74
HpyF3I CTNAG 1 cut(s) 93
Hsp92II CATG 4 cut(s) 68, 81, 87, 108
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 4 cut(s) 80, 144, 156, 171
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 79
MnlI CCTC 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 82
MspR9I CCNGG 1 cut(s) 159
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 74
NlaIII CATG 4 cut(s) 68, 81, 87, 108
NspI RCATGY 2 cut(s) 68, 108
PaeI GCATGC 1 cut(s) 68
PasI CCCWGGG 1 cut(s) 158
PciI ACATGT 1 cut(s) 104
PkrI GCNGC 1 cut(s) 76
PscI ACATGT 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 157
PspGI CCWGG 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 82
SatI GCNGC 1 cut(s) 75
ScrFI CCNGG 1 cut(s) 159
SetI ASST 2 cut(s) 156, 187
SfaNI GCATC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 82
SphI GCATGC 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 1 cut(s) 181
TseI GCWGC 1 cut(s) 74
TspGWI ACGGA 1 cut(s) 62
XceI RCATGY 2 cut(s) 68, 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.