Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0009834

Physical Location & Seq

Genomic Coordinates Reverse (-)

18824953 .. 18833437

Gene Structure 8485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG109200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCAGGACATGAGTTGCAGATCATGAATGGACAATGCCTCCTCTTCTCTCATTTGAATTTCTGCAGAAATTACTTTTTGGAGCTCTCTTGCCTTCATCTTTTACAGTTAGACGGTGATGATGCTGACTGGGATACTGAAGATGAGCTTGAGATTGAAAACCTCACTTTATCTTCTTCAGCTAATCCAGGCTCTGGGGAGGCTCTTGAAAGTAGTCCTCCGGAGCAACATTCTCTTCCAGAGCTGCATTCTCCTCCAGAACAGTGCTCTCCTCAACAACAGCAACAAATTGACTCGGATATCTTTTCTTCAGATTATGAAGGGAGCTTTCTTAATGGTTTTTCAGACAGCTCTGATAATGAGGTAACCATCGATCTTGCATCTGAGGCGGAGACAAAACTTATGTCCTTGGTTAAAATGGGGTACAATGAATTGGAGGCTTCAATGGCAATAGAAAGATGCAGTATAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003886 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006346 GO:0006355 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008213 GO:0008757 GO:0009008 GO:0009605 GO:0009607 GO:0009620 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009750 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018193 GO:0018205 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032776 GO:0034284 GO:0034285 GO:0034641 GO:0034968 GO:0036211 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051567 GO:0051704 GO:0051707 GO:0060255 GO:0061647 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090116 GO:0090304 GO:0098542 GO:0140097 GO:1901360 GO:1901564 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DNA_methylase

Protein Analysis

157

Amino Acids

17.39

Weight (kDa)

4.05

Isoelectric Point (pI)

61.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05870 AT3G05870 AT3G05870 AT3G05870
fragaria_vesca	FvH4_6g08560
pyrus_communis	pycom09g09480
rosa_laevigata	RLG00000030385
rosa_multiflora	Rmu_sc0031274.1_g000002
rosa_roxburghii	Rroxscaffold_2G00108000
rosa_rugosa	Rorug03G0030300
rosa_samantha	Rh1AG045400 Rh1BG109200 Rh1CG048200 Rh1CG049200 Rh1CG050000 Rh1DG053400 Rh3AG088500 Rh3BG091500 Rh3CG091600
rosa_wichuraiana	Rw0G001050 Rw1G003970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	194
AccIII	TCCGGA	1 cut(s)	220
AciI	CCGC	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	58
AcuI	CTGAAG	3 cut(s)	159, 162, 294
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	58, 158, 209, 444
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	6 cut(s)	85, 148, 182, 244, 327, 351
AluI	AGCT	6 cut(s)	85, 148, 182, 244, 327, 351
Alw21I	GWGCWC	2 cut(s)	87, 269
Alw26I	GTCTC	1 cut(s)	386
AlwNI	CAGNNNCTG	1 cut(s)	194
Aor13HI	TCCGGA	1 cut(s)	220
ApeKI	GCWGC	1 cut(s)	244
ApoI	RAATTY	1 cut(s)	58
ArsI	GACNNNNNNTTYG	2 cut(s)	389, 421
AsuHPI	GGTGA	1 cut(s)	128
BanII	GRGCYC	1 cut(s)	87
Bbv12I	GWGCWC	2 cut(s)	87, 269
BbvI	GCAGC	1 cut(s)	231
BccI	CCATC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	189
BciVI	GTATCC	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	386
BfmI	CTRYAG	1 cut(s)	64
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	1 cut(s)	245
BlsI	GCNGC	1 cut(s)	246
Bme1390I	CCNGG	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	189
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	3 cut(s)	112, 389, 449
BmuI	ACTGGG	1 cut(s)	139
BpmI	CTGGAG	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	170
Bsa29I	ATCGAT	1 cut(s)	372
BsaJI	CCNNGG	1 cut(s)	408
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse1I	ACTGG	1 cut(s)	134
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	189
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	1 cut(s)	134
BseRI	GAGGAG	3 cut(s)	32, 243, 261
BseXI	GCAGC	1 cut(s)	231
BshVI	ATCGAT	1 cut(s)	372
BsiHKAI	GWGCWC	2 cut(s)	87, 269
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	247
Bsp1286I	GDGCHC	2 cut(s)	87, 269
Bsp13I	TCCGGA	1 cut(s)	220
Bsp143I	GATC	2 cut(s)	21, 373
BspACI	CCGC	1 cut(s)	389
BspCNI	CTCAG	1 cut(s)	376
BspDI	ATCGAT	1 cut(s)	372
BspEI	TCCGGA	1 cut(s)	220
BspHI	TCATGA	1 cut(s)	24
BspMAI	CTGCAG	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	134
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	2 cut(s)	21, 373
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	3 cut(s)	108, 116, 264
Bst6I	CTCTTC	2 cut(s)	50, 240
BstDEI	CTNAG	1 cut(s)	384
BstEII	GGTNACC	1 cut(s)	364
BstKTI	GATC	2 cut(s)	24, 376
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	2 cut(s)	21, 373
BstMWI	GCNNNNNNNGC	2 cut(s)	386, 446
BstNI	CCWGG	1 cut(s)	189
BstPI	GGTNACC	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	231
Bsu15I	ATCGAT	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	127
BsuTUI	ATCGAT	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	269
CaiI	CAGNNNCTG	1 cut(s)	194
CciI	TCATGA	1 cut(s)	24
ClaI	ATCGAT	1 cut(s)	372
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	2 cut(s)	11, 25
CviJI	RGCY	9 cut(s)	85, 148, 182, 192, 203, 244, 327, 351, 440
CviKI_1	RGCY	9 cut(s)	85, 148, 182, 192, 203, 244, 327, 351, 440
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	384
DpnI	GATC	2 cut(s)	23, 375
DpnII	GATC	2 cut(s)	21, 373
Eam1104I	CTCTTC	2 cut(s)	50, 240
EarI	CTCTTC	2 cut(s)	50, 240
EciI	GGCGGA	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	1 cut(s)	87
Eco32I	GATATC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	3 cut(s)	159, 162, 294
Eco91I	GGTNACC	1 cut(s)	364
EcoICRI	GAGCTC	1 cut(s)	85
EcoO65I	GGTNACC	1 cut(s)	364
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	301
EcoT14I	CCWWGG	1 cut(s)	408
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	14, 28
FaiI	YATR	5 cut(s)	12, 26, 318, 404, 467
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FatI	CATG	2 cut(s)	10, 24
Fnu4HI	GCNGC	1 cut(s)	245
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	245
GluI	GCNGC	1 cut(s)	245
GsuI	CTGGAG	1 cut(s)	240
HapII	CCGG	1 cut(s)	221
Hin1II	CATG	2 cut(s)	14, 28
HinfI	GANTC	1 cut(s)	293
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	1 cut(s)	128
Hpy188I	TCNGA	5 cut(s)	298, 313, 346, 355, 385
Hpy188III	TCNNGA	5 cut(s)	25, 206, 221, 239, 257
HpyAV	CCTTC	2 cut(s)	104, 314
HpyCH4III	ACNGT	3 cut(s)	108, 116, 264
HpyCH4V	TGCA	5 cut(s)	19, 66, 247, 380, 462
HpyF10VI	GCNNNNNNNGC	2 cut(s)	386, 446
HpyF3I	CTNAG	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	14, 28
Kpn2I	TCCGGA	1 cut(s)	220
Kzo9I	GATC	2 cut(s)	21, 373
LmnI	GCTCC	3 cut(s)	82, 223, 324
LpnPI	CCDG	7 cut(s)	115, 174, 180, 201, 234, 252, 270
Lsp1109I	GCAGC	1 cut(s)	231
LweI	GCATC	3 cut(s)	112, 389, 449
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	2 cut(s)	23, 375
MboI	GATC	2 cut(s)	21, 373
MboII	GAAGA	6 cut(s)	37, 152, 165, 168, 227, 300
MhlI	GDGCHC	2 cut(s)	87, 269
MluCI	AATT	4 cut(s)	58, 70, 288, 431
MlyI	GAGTC	1 cut(s)	287
MroI	TCCGGA	1 cut(s)	220
MseI	TTAA	2 cut(s)	333, 414
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	2 cut(s)	386, 446
NdeII	GATC	2 cut(s)	21, 373
NlaIII	CATG	2 cut(s)	14, 28
PagI	TCATGA	1 cut(s)	24
PctI	GAATGC	1 cut(s)	247
PflMI	CCANNNNNTGG	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	246
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	187
PspEI	GGTNACC	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	2 cut(s)	333, 414
SatI	GCNGC	1 cut(s)	245
Sau3AI	GATC	2 cut(s)	21, 373
SchI	GAGTC	1 cut(s)	287
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	87, 269
SetI	ASST	8 cut(s)	87, 150, 165, 184, 246, 329, 353, 366
SfaNI	GCATC	3 cut(s)	112, 389, 449
SfcI	CTRYAG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	149
SmoI	CTYRAG	1 cut(s)	149
Sse9I	AATT	4 cut(s)	58, 70, 288, 431
SsiI	CCGC	1 cut(s)	389
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	3 cut(s)	108, 116, 264
TaqI	TCGA	1 cut(s)	372
TasI	AATT	4 cut(s)	58, 70, 288, 431
Tru1I	TTAA	2 cut(s)	333, 414
Tru9I	TTAA	2 cut(s)	333, 414
TscAI	CASTG	1 cut(s)	269
TseI	GCWGC	1 cut(s)	244
TspDTI	ATGAA	4 cut(s)	41, 86, 333, 444
TspRI	CASTG	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	194
XapI	RAATTY	1 cut(s)	58

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.