Rh1DG053400

Anaphase-promoting complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009834
Physical Location & Seq
Forward (+)
8560546 .. 8567086
6541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG053400.1

Sequence Viewer

Length: 477 bp
ATGGTGGAGCGAATCGGAAATCTGGGCGAGGCACTCGTCGACGTTGCCGCCAAACGCTATGGAAGCGATGGCGAGACCATGTTGACCATGATGTGGCATGCTGTTGCTGCATGGACATGGGATGCTCAGGACGAAACATGTGGCATTTGTAGGATGGCATTTGATGGTTGTTGTCCTGATTGTAAGCTCCCTGGGGATGATTGCCCACTAATTTGGGGTGCATGCAACCATGCATTTCATCTTCATTGCATCCTAAAATGGGTAAAATTCAGAGACTTCTCAAGCACATTGCCTCATGTGCCGGAGGGAGTGGCAGTTCAAAGGATGAGAGAAAAATTGGGATCCCTTTTAAGGAATTCCTGCCCCCTTCTCTCTCTCTGTCATAATGTGCAGGGATTGCCGGTGCAGACTCGCAAATGTTCGGTTGATATTAGACTGAGGCAATGTACATTTTGTGTATCTGGTTATCTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04110 ko04111 ko04113 ko04114 ko04120 ko04914 ko05166 map04110 map04111 map04113 map04114 map04120 map04914 map05166
Pfam Domains
Protein Families
zf-ANAPC11

Protein Analysis

158

Amino Acids

17.65

Weight (kDa)

6.95

Isoelectric Point (pI)

31.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-ANAPC11 PF12861 44 - 92 1.1e-26 Anaphase-promoting complex subunit 11 RING-H2 finger
zf-rbx1 PF12678 45 - 90 2.2e-19 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 93
AccI GTMKAC 1 cut(s) 39
AciI CCGC 1 cut(s) 48
AclWI GGATC 2 cut(s) 336, 349
AcsI RAATTY 2 cut(s) 266, 355
AfaI GTAC 1 cut(s) 448
AfiI CCNNNNNNNGG 3 cut(s) 93, 259, 351
AflIII ACRYGT 1 cut(s) 137
AgsI TTSAA 1 cut(s) 320
AjnI CCWGG 1 cut(s) 190
AloI GAACNNNNNNTCC 2 cut(s) 300, 332
AluBI AGCT 1 cut(s) 187
AluI AGCT 1 cut(s) 187
Alw26I GTCTC 2 cut(s) 68, 267
AlwI GGATC 2 cut(s) 336, 349
ApeKI GCWGC 1 cut(s) 107
ApoI RAATTY 2 cut(s) 266, 355
BamHI GGATCC 1 cut(s) 341
BbvI GCAGC 1 cut(s) 94
BccI CCATC 3 cut(s) 62, 148, 158
BciT130I CCWGG 1 cut(s) 192
BcoDI GTCTC 2 cut(s) 68, 267
BisI GCNGC 2 cut(s) 48, 108
BlsI GCNGC 2 cut(s) 49, 109
Bme1390I CCNGG 1 cut(s) 192
BmiI GGNNCC 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 192
BmsI GCATC 2 cut(s) 112, 258
Bpu10I CCTNAGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 265
BsaI GGTCTC 1 cut(s) 68
BsaJI CCNNGG 2 cut(s) 190, 191
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
Bsc4I CCNNNNNNNGG 3 cut(s) 93, 259, 351
Bse118I RCCGGY 1 cut(s) 400
Bse3DI GCAATG 3 cut(s) 244, 287, 449
BseBI CCWGG 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 190, 191
BseGI GGATG 5 cut(s) 127, 159, 202, 249, 330
BseLI CCNNNNNNNGG 3 cut(s) 93, 259, 351
BseMI GCAATG 3 cut(s) 244, 287, 449
BseMII CTCAG 2 cut(s) 140, 428
BseXI GCAGC 1 cut(s) 94
BsgI GTGCAG 2 cut(s) 410, 425
BsiSI CCGG 2 cut(s) 302, 401
BslI CCNNNNNNNGG 3 cut(s) 93, 259, 351
BsmAI GTCTC 2 cut(s) 68, 267
Bso31I GGTCTC 1 cut(s) 68
Bsp1407I TGTACA 1 cut(s) 446
Bsp143I GATC 1 cut(s) 341
BspACI CCGC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 139, 429
BspLI GGNNCC 1 cut(s) 343
BspPI GGATC 2 cut(s) 336, 349
BspTNI GGTCTC 1 cut(s) 68
BsrDI GCAATG 3 cut(s) 244, 287, 449
BsrFI RCCGGY 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 446
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 2 cut(s) 190, 191
BssMI GATC 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 192
BstAPI GCANNNNNTGC 1 cut(s) 397
BstAUI TGTACA 1 cut(s) 446
BstC8I GCNNGC 2 cut(s) 99, 223
BstDEI CTNAG 2 cut(s) 126, 437
BstF5I GGATG 5 cut(s) 127, 159, 202, 249, 330
BstKTI GATC 1 cut(s) 344
BstMAI GTCTC 2 cut(s) 68, 267
BstMBI GATC 1 cut(s) 341
BstMWI GCNNNNNNNGC 4 cut(s) 63, 107, 298, 397
BstNI CCWGG 1 cut(s) 192
BstNSI RCATGY 3 cut(s) 101, 141, 225
BstSCI CCNGG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 341
BstXI CCANNNNNNTGG 1 cut(s) 213
BstYI RGATCY 1 cut(s) 341
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 5 cut(s) 127, 159, 202, 249, 330
Cac8I GCNNGC 2 cut(s) 99, 223
Cfr10I RCCGGY 1 cut(s) 400
Csp6I GTAC 1 cut(s) 447
CviAII CATG 9 cut(s) 79, 88, 98, 111, 117, 138, 222, 230, 296
CviJI RGCY 1 cut(s) 187
CviKI_1 RGCY 1 cut(s) 187
CviQI GTAC 1 cut(s) 447
DdeI CTNAG 2 cut(s) 126, 437
DpnI GATC 1 cut(s) 343
DpnII GATC 1 cut(s) 341
Eco31I GGTCTC 1 cut(s) 68
EcoRI GAATTC 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 190
EcoT22I ATGCAT 1 cut(s) 235
FaeI CATG 9 cut(s) 82, 91, 101, 114, 120, 141, 225, 233, 299
FatI CATG 9 cut(s) 78, 87, 97, 110, 116, 137, 221, 229, 295
FblI GTMKAC 1 cut(s) 39
Fnu4HI GCNGC 2 cut(s) 48, 108
FokI GGATG 5 cut(s) 134, 166, 209, 236, 337
Fsp4HI GCNGC 2 cut(s) 48, 108
GluI GCNGC 2 cut(s) 48, 108
HapII CCGG 2 cut(s) 302, 401
Hin1II CATG 9 cut(s) 82, 91, 101, 114, 120, 141, 225, 233, 299
HincII GTYRAC 2 cut(s) 40, 84
HindII GTYRAC 2 cut(s) 40, 84
HinfI GANTC 2 cut(s) 12, 409
HpaII CCGG 2 cut(s) 302, 401
Hpy166II GTNNAC 2 cut(s) 40, 84
Hpy188I TCNGA 2 cut(s) 17, 272
Hpy188III TCNNGA 2 cut(s) 128, 176
Hpy8I GTNNAC 2 cut(s) 40, 84
Hpy99I CGWCG 2 cut(s) 41, 44
HpyAV CCTTC 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 7 cut(s) 110, 221, 225, 233, 249, 391, 406
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 107, 298, 397
HpyF3I CTNAG 2 cut(s) 126, 437
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 9 cut(s) 82, 91, 101, 114, 120, 141, 225, 233, 299
Kzo9I GATC 1 cut(s) 341
LmnI GCTCC 2 cut(s) 7, 192
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 2 cut(s) 112, 258
MaeII ACGT 1 cut(s) 42
MalI GATC 1 cut(s) 343
MboI GATC 1 cut(s) 341
MboII GAAGA 1 cut(s) 233
MflI RGATCY 1 cut(s) 341
MluCI AATT 4 cut(s) 210, 266, 335, 355
MlyI GAGTC 1 cut(s) 403
MnlI CCTC 4 cut(s) 22, 298, 303, 432
Mph1103I ATGCAT 1 cut(s) 235
MseI TTAA 1 cut(s) 350
MslI CAYNNNNRTG 1 cut(s) 115
MspI CCGG 2 cut(s) 302, 401
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
MwoI GCNNNNNNNGC 4 cut(s) 63, 107, 298, 397
NdeII GATC 1 cut(s) 341
NlaIII CATG 9 cut(s) 82, 91, 101, 114, 120, 141, 225, 233, 299
NlaIV GGNNCC 1 cut(s) 343
NsiI ATGCAT 1 cut(s) 235
NspI RCATGY 3 cut(s) 101, 141, 225
PaeI GCATGC 2 cut(s) 101, 225
PasI CCCWGGG 1 cut(s) 191
PciI ACATGT 1 cut(s) 137
PfeI GAWTC 1 cut(s) 12
PflMI CCANNNNNTGG 1 cut(s) 93
PkrI GCNGC 2 cut(s) 49, 109
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PscI ACATGT 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 190
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 1 cut(s) 343
PsuI RGATCY 1 cut(s) 341
RsaI GTAC 1 cut(s) 448
RsaNI GTAC 1 cut(s) 447
RseI CAYNNNNRTG 1 cut(s) 115
SalI GTCGAC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 350
SatI GCNGC 2 cut(s) 48, 108
Sau3AI GATC 1 cut(s) 341
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 192
SetI ASST 2 cut(s) 45, 189
SfaNI GCATC 2 cut(s) 112, 258
SgrDI CGTCGACG 1 cut(s) 38
SmiMI CAYNNNNRTG 1 cut(s) 115
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
SphI GCATGC 2 cut(s) 101, 225
Sse9I AATT 4 cut(s) 210, 266, 335, 355
SsiI CCGC 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 190
TaiI ACGT 1 cut(s) 45
TaqI TCGA 1 cut(s) 39
TasI AATT 4 cut(s) 210, 266, 335, 355
TatI WGTACW 1 cut(s) 446
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 1 cut(s) 12
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TseI GCWGC 1 cut(s) 107
TspDTI ATGAA 2 cut(s) 227, 233
Van91I CCANNNNNTGG 1 cut(s) 93
XapI RAATTY 2 cut(s) 266, 355
XceI RCATGY 3 cut(s) 101, 141, 225
XmiI GTMKAC 1 cut(s) 39
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.