Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0009460

Physical Location & Seq

Genomic Coordinates Reverse (-)

5854295 .. 5857358

Gene Structure 3064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g09820.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGAATCGGTACAGTCTCAAGCTTTGGATTTCTTGGATTTTTGGCTATTGGTATAGTAATTATCCAAATTGTTTGAAATTACTGAAGCATCCAGAGGTTGAGGTGGAGAAGGAAAAGGAAAATGCCAAAGTGAAAGCTGAAGAATCAGAAGAAGCTTGGAAGCAGACTCTAGCTTCTTTCAAAGAACAAGCTTTAAACCTGAAAAGTGTCTCTCAGGAAGCGTATGAGATATACTCTGAGAAAGCATTTGTAATTTTGAAGGAAACGTCAGAGCAGTTGAAAATACAGGGTGATAAGGCAATGTGTGATTTGACTGAGGTAGCTAAAGAGATCAGCGAAGAAGGTAAAGAATTTATCTCCACAGCCGCAAAGAATTCTCCCGAGCCAGTGAAGGAAATTGTTGAGACGTTCCAAACATCATCTGATGATCTCAATGACGTCACAAAAATCCGCGACTTTCATGTTGGGATACCATATGGTTTGGTTCTCTCTCTTGGTGGCATCCTTTCCTTCATGGTAACTGGAAGCACTGCTGCAATTAGATTTGGGGTTATCCTTGGTGGTACTCTTTTGGCTTTAAGTATTTCGAGTTTGAGATCATTTAAGCAAGGAGAATCATTTCCTTTGGCCTTGAAAGGGCAGGCAGCTATTGCCAGTATACTTTTTCTGAGGGAGGCACGCCTACTGACTCAGAGATCATGGATTCCATATTTGTTGACAACCTTTGTCAGTGGAGGTATTGTAGCTTTCTATGTCTATAGGATTGTACAGAGTCGTAAACACCAAAAAGATTCGAGCTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

269

Amino Acids

30.2

Weight (kDa)

6.38

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_14	PF03647	207 - 294	3e-13	Transmembrane proteins 14C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38550
fragaria_vesca	FvH4_6g09820 FvH4_6g09820 FvH4_6g09820 FvH4_6g09820
malus_domestica	MD04G1175000.v1.1 MD12G1188700.v1.1
prunus_persica	Prupe.6G294000_v2.0.a1 Prupe.6G294000_v2.0.a1
pyrus_communis	pycom04g15440
rosa_chinensis	RchiOBHm_Chr3g0460431
rosa_laevigata	RLG00000025012
rosa_multiflora	Rmu_sc0004267.1_g000011 Rmu_sc0021028.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419490
rosa_rugosa	Rorug03G0042600 Rorug03G0042600
rosa_samantha	Rh3AG100600 Rh3BG104600 Rh3CG106400 Rh3DG105900
rosa_wichuraiana	Rw3G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	441
AccI	GTMKAC	1 cut(s)	658
AccII	CGCG	1 cut(s)	453
AciI	CCGC	2 cut(s)	366, 451
AcsI	RAATTY	2 cut(s)	350, 373
AcuI	CTGAAG	2 cut(s)	104, 159
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	3 cut(s)	11, 565, 768
AfiI	CCNNNNNNNGG	1 cut(s)	636
AgsI	TTSAA	6 cut(s)	76, 181, 259, 280, 634, 803
AluBI	AGCT	9 cut(s)	22, 137, 155, 173, 191, 323, 647, 746, 798
AluI	AGCT	9 cut(s)	22, 137, 155, 173, 191, 323, 647, 746, 798
Alw26I	GTCTC	3 cut(s)	20, 214, 398
Ama87I	CYCGRG	1 cut(s)	380
AoxI	GGCC	1 cut(s)	627
ApeKI	GCWGC	2 cut(s)	533, 644
ApoI	RAATTY	2 cut(s)	350, 373
Asp700I	GAANNNNTTC	1 cut(s)	618
AsuHPI	GGTGA	1 cut(s)	302
AvaI	CYCGRG	1 cut(s)	380
BbvI	GCAGC	2 cut(s)	520, 656
BciVI	GTATCC	1 cut(s)	462
BcoDI	GTCTC	3 cut(s)	20, 214, 398
BfaI	CTAG	1 cut(s)	170
BfmI	CTRYAG	1 cut(s)	757
BfuI	GTATCC	1 cut(s)	462
BisI	GCNGC	3 cut(s)	366, 534, 645
BlsI	GCNGC	3 cut(s)	367, 535, 646
BmeT110I	CYCGRG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	97, 510
BplI	GAGNNNNNCTC	2 cut(s)	218, 250
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	1 cut(s)	556
BsaXI	ACNNNNNCTCC	2 cut(s)	726, 756
Bsc4I	CCNNNNNNNGG	1 cut(s)	636
Bse1I	ACTGG	3 cut(s)	386, 526, 654
Bse3DI	GCAATG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	556
BseGI	GGATG	2 cut(s)	88, 501
BseLI	CCNNNNNNNGG	1 cut(s)	636
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	5 cut(s)	227, 228, 306, 659, 704
BseNI	ACTGG	3 cut(s)	386, 526, 654
BseXI	GCAGC	2 cut(s)	520, 656
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	1 cut(s)	629
BsiHKCI	CYCGRG	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	636
BsmAI	GTCTC	3 cut(s)	20, 214, 398
BsmBI	CGTCTC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	629
BsoBI	CYCGRG	1 cut(s)	380
Bsp1407I	TGTACA	1 cut(s)	766
Bsp143I	GATC	4 cut(s)	330, 427, 596, 695
BspACI	CCGC	2 cut(s)	366, 451
BspANI	GGCC	1 cut(s)	629
BspCNI	CTCAG	5 cut(s)	226, 229, 307, 660, 703
BspFNI	CGCG	1 cut(s)	453
BsrDI	GCAATG	1 cut(s)	306
BsrGI	TGTACA	1 cut(s)	766
BsrI	ACTGG	3 cut(s)	386, 526, 654
BssECI	CCNNGG	1 cut(s)	556
BssMI	GATC	4 cut(s)	330, 427, 596, 695
BssNAI	GTATAC	1 cut(s)	659
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	1 cut(s)	556
Bst1107I	GTATAC	1 cut(s)	659
Bst4CI	ACNGT	1 cut(s)	14
BstACI	GRCGYC	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstAUI	TGTACA	1 cut(s)	766
BstC8I	GCNNGC	2 cut(s)	642, 679
BstDEI	CTNAG	5 cut(s)	213, 237, 315, 668, 690
BstF5I	GGATG	2 cut(s)	88, 501
BstFNI	CGCG	1 cut(s)	453
BstKTI	GATC	4 cut(s)	333, 430, 599, 698
BstMAI	GTCTC	3 cut(s)	20, 214, 398
BstMBI	GATC	4 cut(s)	330, 427, 596, 695
BstMWI	GCNNNNNNNGC	1 cut(s)	650
BstSFI	CTRYAG	1 cut(s)	757
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	2 cut(s)	520, 656
BstZ17I	GTATAC	1 cut(s)	659
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	1 cut(s)	629
BtsCI	GGATG	2 cut(s)	88, 501
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	3 cut(s)	393, 528, 736
Cac8I	GCNNGC	2 cut(s)	642, 679
Csp6I	GTAC	3 cut(s)	10, 564, 767
CviAII	CATG	3 cut(s)	461, 514, 699
CviQI	GTAC	3 cut(s)	10, 564, 767
DdeI	CTNAG	5 cut(s)	213, 237, 315, 668, 690
DpnI	GATC	4 cut(s)	332, 429, 598, 697
DpnII	GATC	4 cut(s)	330, 427, 596, 695
DraI	TTTAAA	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	556
Eco57I	CTGAAG	2 cut(s)	104, 159
Eco88I	CYCGRG	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	373
EcoT14I	CCWWGG	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	556
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	3 cut(s)	464, 517, 702
FatI	CATG	3 cut(s)	460, 513, 698
FauNDI	CATATG	1 cut(s)	475
FblI	GTMKAC	1 cut(s)	658
Fnu4HI	GCNGC	3 cut(s)	366, 534, 645
FokI	GGATG	2 cut(s)	75, 488
Fsp4HI	GCNGC	3 cut(s)	366, 534, 645
FspBI	CTAG	1 cut(s)	170
GluI	GCNGC	3 cut(s)	366, 534, 645
HaeIII	GGCC	1 cut(s)	629
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	3 cut(s)	464, 517, 702
HincII	GTYRAC	1 cut(s)	717
HindII	GTYRAC	1 cut(s)	717
HindIII	AAGCTT	3 cut(s)	20, 153, 189
HinfI	GANTC	8 cut(s)	4, 143, 166, 614, 688, 703, 772, 791
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	3 cut(s)	659, 717, 779
Hpy188I	TCNGA	6 cut(s)	148, 238, 271, 424, 669, 693
Hpy188III	TCNNGA	3 cut(s)	92, 215, 380
Hpy8I	GTNNAC	3 cut(s)	659, 717, 779
HpyAV	CCTTC	5 cut(s)	103, 253, 335, 385, 520
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4IV	ACGT	3 cut(s)	266, 407, 438
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	1 cut(s)	650
HpyF3I	CTNAG	5 cut(s)	213, 237, 315, 668, 690
HpySE526I	ACGT	3 cut(s)	266, 407, 438
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	3 cut(s)	464, 517, 702
Kzo9I	GATC	4 cut(s)	330, 427, 596, 695
LpnPI	CCDG	8 cut(s)	105, 200, 212, 272, 399, 507, 626, 667
Lsp1109I	GCAGC	2 cut(s)	520, 656
LweI	GCATC	2 cut(s)	97, 510
MaeI	CTAG	1 cut(s)	170
MaeII	ACGT	3 cut(s)	266, 407, 438
MaeIII	GTNAC	2 cut(s)	439, 517
MalI	GATC	4 cut(s)	332, 429, 598, 697
MboI	GATC	4 cut(s)	330, 427, 596, 695
MboII	GAAGA	3 cut(s)	152, 161, 350
MluCI	AATT	8 cut(s)	58, 67, 77, 252, 350, 373, 396, 537
MlyI	GAGTC	3 cut(s)	160, 682, 781
MnlI	CCTC	6 cut(s)	88, 94, 310, 663, 667, 728
MroXI	GAANNNNTTC	1 cut(s)	618
MseI	TTAA	3 cut(s)	194, 578, 603
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	1 cut(s)	650
NdeI	CATATG	1 cut(s)	475
NdeII	GATC	4 cut(s)	330, 427, 596, 695
NlaIII	CATG	3 cut(s)	464, 517, 702
NmuCI	GTSAC	1 cut(s)	439
PdmI	GAANNNNTTC	1 cut(s)	618
PfeI	GAWTC	5 cut(s)	4, 143, 614, 703, 791
PkrI	GCNGC	3 cut(s)	367, 535, 646
PleI	GAGTC	3 cut(s)	160, 682, 780
PpsI	GAGTC	3 cut(s)	160, 682, 780
RsaI	GTAC	3 cut(s)	11, 565, 768
RsaNI	GTAC	3 cut(s)	10, 564, 767
SaqAI	TTAA	3 cut(s)	194, 578, 603
SatI	GCNGC	3 cut(s)	366, 534, 645
Sau3AI	GATC	4 cut(s)	330, 427, 596, 695
SchI	GAGTC	3 cut(s)	160, 682, 781
SfaNI	GCATC	2 cut(s)	97, 510
SfcI	CTRYAG	1 cut(s)	757
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	8 cut(s)	58, 67, 77, 252, 350, 373, 396, 537
SsiI	CCGC	2 cut(s)	366, 451
SspMI	CTAG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	556
TaaI	ACNGT	1 cut(s)	14
TaiI	ACGT	3 cut(s)	269, 410, 441
TaqI	TCGA	2 cut(s)	587, 794
TasI	AATT	8 cut(s)	58, 67, 77, 252, 350, 373, 396, 537
TatI	WGTACW	1 cut(s)	766
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	5 cut(s)	4, 143, 614, 703, 791
Tru1I	TTAA	3 cut(s)	194, 578, 603
Tru9I	TTAA	3 cut(s)	194, 578, 603
TscAI	CASTG	3 cut(s)	393, 535, 736
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	2 cut(s)	533, 644
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	3 cut(s)	17, 449, 502
TspRI	CASTG	3 cut(s)	393, 535, 736
XapI	RAATTY	2 cut(s)	350, 373
XmiI	GTMKAC	1 cut(s)	658
XmnI	GAANNNNTTC	1 cut(s)	618
XspI	CTAG	1 cut(s)	170
ZraI	GACGTC	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.