Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0009460

Physical Location & Seq

Genomic Coordinates Forward (+)

26994250 .. 26997313

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G294000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAGCGTGACGTTGCAGTCGTTCTCGCTCTTAAACCCTAACCCTAGCTGTGGCTCGAAGAAGCCGGCTCCGCTGGCCTTGTGTTCATCACCTTCGTCTTCTCTGCGGTTCCATCAATTGACTGGAGCTCGCGGTTATGGAGCCCCTATTGTCCTCCCGAAAGGGCTTACCGGTGCTTATCTTTCACTGCACCGACGGAGCTTGTGGACTCGACCAATTGTCGCTGCCGCTGCTTCACAGGAGGAATCGAAGCATCCAGAGATTGAGGTGGAGAAAGAAAAGGATACTGCCAAATTGAAATCTGAAGAATCAGAAGAAGCTTGGAAACAGACTCTGGCCGCTTTCAAAGAACAAGCCTTAAAGATGCAAGGCATCTCACAGGAAGCATATGAGTTATACTCTAAGAAGGCATTAGTTATTTTGAAAGAAACTTCAGAGCAGTTAAAAATACAGGCTGATAAGGCAAGGATTGATTTGAGTGAGATAGCAAAAGAAATCAGTGAAGAAGGTAAAGAATATATCTCCACAGCTGCAAAGAATTCCCCCGAGCCAGTGAAGGAAATTGTTGAAACATTTAACTCATCAGCTGATGATCTGAATGATGTTTCAAAAGTCCGCGACTTTCATGTTGGGATACCTTATGGTCTTCTTCTTTCTCTTGGTGGCTTCCTTTCCTTTATGGTAACGGGAAGCATTTCTGCAATTAGGTTTGGGGTTATCATTGGTGGCGCTCTTTTGTTTTTAAGCGTTTCAAGTTTAAGATCATATAAGCAAGGAGAATCATCTCCTTTAACCTTGAAAGGGCAGGCAGCTATAGCCAGTATAATTTTTCTGAGGGAGGTACGCTTGCTAGCTCAGAGGTCGTCATTTCCGAATTTGACAACAACCCTTGTCAGTGGAGCAGTTGTAGCTTTCTACGTCTATAAGATTGTACAGAATCGCAAACATCAAAAGGGCTCCAACTTTGAGAAGGAGACGGAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

329

Amino Acids

35.84

Weight (kDa)

8.97

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38550
fragaria_vesca	FvH4_6g09820 FvH4_6g09820 FvH4_6g09820 FvH4_6g09820
malus_domestica	MD04G1175000.v1.1 MD12G1188700.v1.1
prunus_persica	Prupe.6G294000_v2.0.a1 Prupe.6G294000_v2.0.a1
pyrus_communis	pycom04g15440
rosa_chinensis	RchiOBHm_Chr3g0460431
rosa_laevigata	RLG00000025012
rosa_multiflora	Rmu_sc0004267.1_g000011 Rmu_sc0021028.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419490
rosa_rugosa	Rorug03G0042600 Rorug03G0042600
rosa_samantha	Rh3AG100600 Rh3BG104600 Rh3CG106400 Rh3DG105900
rosa_wichuraiana	Rw3G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AccII	CGCG	2 cut(s)	132, 618
AciI	CCGC	6 cut(s)	71, 106, 132, 228, 339, 616
AcoI	YGGCCR	1 cut(s)	336
AcsI	RAATTY	3 cut(s)	538, 874, 981
AcuI	CTGAAG	2 cut(s)	324, 417
AfaI	GTAC	2 cut(s)	843, 933
AfiI	CCNNNNNNNGG	2 cut(s)	50, 801
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	7 cut(s)	298, 346, 424, 569, 609, 753, 799
AhdI	GACNNNNNGTC	1 cut(s)	218
AluBI	AGCT	9 cut(s)	48, 128, 201, 320, 530, 587, 812, 854, 911
AluI	AGCT	9 cut(s)	48, 128, 201, 320, 530, 587, 812, 854, 911
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	968
AlwNI	CAGNNNCTG	1 cut(s)	334
Ama87I	CYCGRG	1 cut(s)	545
AoxI	GGCC	2 cut(s)	75, 336
ApeKI	GCWGC	4 cut(s)	224, 230, 530, 809
ApoI	RAATTY	3 cut(s)	538, 874, 981
AsiGI	ACCGGT	1 cut(s)	170
Asp700I	GAANNNNTTC	1 cut(s)	694
AspLEI	GCGC	1 cut(s)	731
AsuHPI	GGTGA	1 cut(s)	81
AsuNHI	GCTAGC	1 cut(s)	850
AvaI	CYCGRG	1 cut(s)	545
BanII	GRGCYC	3 cut(s)	130, 145, 959
BbsI	GAAGAC	2 cut(s)	90, 638
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	4 cut(s)	211, 217, 517, 821
BccI	CCATC	1 cut(s)	120
BciVI	GTATCC	2 cut(s)	277, 627
BcoDI	GTCTC	1 cut(s)	968
BfaI	CTAG	2 cut(s)	45, 851
BfmI	CTRYAG	1 cut(s)	813
BfoI	RGCGCY	1 cut(s)	732
BfuI	GTATCC	2 cut(s)	277, 627
BisI	GCNGC	6 cut(s)	225, 228, 231, 339, 531, 810
BlsI	GCNGC	6 cut(s)	226, 229, 232, 340, 532, 811
BmeRI	GACNNNNNGTC	1 cut(s)	218
BmeT110I	CYCGRG	1 cut(s)	545
BmiI	GGNNCC	4 cut(s)	69, 110, 142, 958
BmsI	GCATC	3 cut(s)	262, 354, 381
BmtI	GCTAGC	1 cut(s)	854
BpiI	GAAGAC	2 cut(s)	90, 638
BplI	GAGNNNNNCTC	2 cut(s)	383, 415
BpmI	CTGGAG	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	891, 921
Bsc4I	CCNNNNNNNGG	2 cut(s)	50, 801
Bse118I	RCCGGY	2 cut(s)	64, 170
Bse1I	ACTGG	3 cut(s)	127, 551, 819
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	2 cut(s)	50, 801
BseMII	CTCAG	2 cut(s)	824, 869
BseNI	ACTGG	3 cut(s)	127, 551, 819
BseXI	GCAGC	4 cut(s)	211, 217, 517, 821
BsgI	GTGCAG	1 cut(s)	173
Bsh1236I	CGCG	2 cut(s)	132, 618
BshFI	GGCC	2 cut(s)	77, 338
BshTI	ACCGGT	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	130
BsiHKCI	CYCGRG	1 cut(s)	545
BsiSI	CCGG	2 cut(s)	65, 171
BslI	CCNNNNNNNGG	2 cut(s)	50, 801
BsmAI	GTCTC	1 cut(s)	968
BsmBI	CGTCTC	1 cut(s)	968
BsnI	GGCC	2 cut(s)	77, 338
BsoBI	CYCGRG	1 cut(s)	545
Bsp1286I	GDGCHC	3 cut(s)	130, 145, 959
Bsp1407I	TGTACA	1 cut(s)	931
Bsp143I	GATC	2 cut(s)	592, 761
BspACI	CCGC	6 cut(s)	71, 106, 132, 228, 339, 616
BspANI	GGCC	2 cut(s)	77, 338
BspCNI	CTCAG	2 cut(s)	825, 868
BspFNI	CGCG	2 cut(s)	132, 618
BspLI	GGNNCC	4 cut(s)	69, 110, 142, 958
BspOI	GCTAGC	1 cut(s)	854
BsrFI	RCCGGY	2 cut(s)	64, 170
BsrGI	TGTACA	1 cut(s)	931
BsrI	ACTGG	3 cut(s)	127, 551, 819
BssAI	RCCGGY	2 cut(s)	64, 170
BssMI	GATC	2 cut(s)	592, 761
BstAUI	TGTACA	1 cut(s)	931
BstC8I	GCNNGC	6 cut(s)	66, 75, 130, 807, 848, 852
BstDEI	CTNAG	3 cut(s)	402, 833, 855
BstF5I	GGATG	1 cut(s)	253
BstFNI	CGCG	2 cut(s)	132, 618
BstH2I	RGCGCY	1 cut(s)	732
BstHHI	GCGC	1 cut(s)	731
BstKTI	GATC	2 cut(s)	595, 764
BstMAI	GTCTC	1 cut(s)	968
BstMBI	GATC	2 cut(s)	592, 761
BstMWI	GCNNNNNNNGC	6 cut(s)	70, 74, 230, 461, 815, 908
BstSFI	CTRYAG	1 cut(s)	813
BstUI	CGCG	2 cut(s)	132, 618
BstV1I	GCAGC	4 cut(s)	211, 217, 517, 821
BstV2I	GAAGAC	2 cut(s)	90, 638
BsuI	GTATCC	2 cut(s)	277, 627
BsuRI	GGCC	2 cut(s)	77, 338
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	185
BtsIMutI	CAGTG	4 cut(s)	185, 505, 558, 901
Cac8I	GCNNGC	6 cut(s)	66, 75, 130, 807, 848, 852
CaiI	CAGNNNCTG	1 cut(s)	334
CfoI	GCGC	1 cut(s)	731
Cfr10I	RCCGGY	2 cut(s)	64, 170
Csp6I	GTAC	2 cut(s)	842, 932
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	1 cut(s)	626
CviQI	GTAC	2 cut(s)	842, 932
DdeI	CTNAG	3 cut(s)	402, 833, 855
DpnI	GATC	2 cut(s)	594, 763
DpnII	GATC	2 cut(s)	592, 761
DrdI	GACNNNNNNGTC	1 cut(s)	16
DriI	GACNNNNNGTC	1 cut(s)	218
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	336
Eam1105I	GACNNNNNGTC	1 cut(s)	218
Ecl136II	GAGCTC	1 cut(s)	128
Eco24I	GRGCYC	3 cut(s)	130, 145, 959
Eco53kI	GAGCTC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	324, 417
Eco88I	CYCGRG	1 cut(s)	545
EcoICRI	GAGCTC	1 cut(s)	128
EcoRI	GAATTC	1 cut(s)	538
EcoT38I	GRGCYC	3 cut(s)	130, 145, 959
Esp3I	CGTCTC	1 cut(s)	968
FaeI	CATG	1 cut(s)	629
FatI	CATG	1 cut(s)	625
FauNDI	CATATG	1 cut(s)	388
Fnu4HI	GCNGC	6 cut(s)	225, 228, 231, 339, 531, 810
FokI	GGATG	1 cut(s)	240
FriOI	GRGCYC	3 cut(s)	130, 145, 959
Fsp4HI	GCNGC	6 cut(s)	225, 228, 231, 339, 531, 810
FspBI	CTAG	2 cut(s)	45, 851
GlaI	GCGC	1 cut(s)	730
GluI	GCNGC	6 cut(s)	225, 228, 231, 339, 531, 810
GsuI	CTGGAG	1 cut(s)	144
HaeII	RGCGCY	1 cut(s)	732
HaeIII	GGCC	2 cut(s)	77, 338
HapII	CCGG	2 cut(s)	65, 171
HhaI	GCGC	1 cut(s)	731
Hin1II	CATG	1 cut(s)	629
Hin6I	GCGC	1 cut(s)	729
HinP1I	GCGC	1 cut(s)	729
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	6 cut(s)	208, 245, 308, 331, 779, 937
HpaII	CCGG	2 cut(s)	65, 171
HphI	GGTGA	1 cut(s)	81
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	7 cut(s)	304, 313, 436, 597, 834, 858, 873
Hpy188III	TCNNGA	2 cut(s)	157, 257
Hpy8I	GTNNAC	1 cut(s)	207
Hpy99I	CGWCG	1 cut(s)	198
HpyAV	CCTTC	5 cut(s)	102, 400, 500, 550, 964
HpyCH4IV	ACGT	2 cut(s)	11, 918
HpyCH4V	TGCA	5 cut(s)	16, 190, 367, 533, 701
HpyF10VI	GCNNNNNNNGC	6 cut(s)	70, 74, 230, 461, 815, 908
HpyF3I	CTNAG	3 cut(s)	402, 833, 855
HpySE526I	ACGT	2 cut(s)	11, 918
Hsp92II	CATG	1 cut(s)	629
HspAI	GCGC	1 cut(s)	729
KroI	GCCGGC	1 cut(s)	64
KroNI	GCCGGC	1 cut(s)	66
Kzo9I	GATC	2 cut(s)	592, 761
LmnI	GCTCC	6 cut(s)	73, 125, 140, 198, 899, 962
Lsp1109I	GCAGC	4 cut(s)	211, 217, 517, 821
LweI	GCATC	3 cut(s)	262, 354, 381
MaeI	CTAG	2 cut(s)	45, 851
MaeII	ACGT	2 cut(s)	11, 918
MaeIII	GTNAC	2 cut(s)	7, 682
MalI	GATC	2 cut(s)	594, 763
MboI	GATC	2 cut(s)	592, 761
MboII	GAAGA	7 cut(s)	70, 90, 317, 326, 515, 638, 641
MfeI	CAATTG	2 cut(s)	116, 216
MhlI	GDGCHC	3 cut(s)	130, 145, 959
MluCI	AATT	9 cut(s)	116, 216, 293, 538, 561, 702, 825, 874, 981
MlyI	GAGTC	2 cut(s)	202, 325
MmeI	TCCRAC	1 cut(s)	984
MnlI	CCTC	6 cut(s)	164, 235, 259, 828, 832, 852
MroNI	GCCGGC	1 cut(s)	64
MroXI	GAANNNNTTC	1 cut(s)	694
MseI	TTAA	7 cut(s)	32, 359, 443, 576, 743, 758, 791
MspA1I	CMGCKG	4 cut(s)	73, 230, 530, 587
MspI	CCGG	2 cut(s)	65, 171
MunI	CAATTG	2 cut(s)	116, 216
MvnI	CGCG	2 cut(s)	132, 618
MwoI	GCNNNNNNNGC	6 cut(s)	70, 74, 230, 461, 815, 908
NaeI	GCCGGC	1 cut(s)	66
NdeI	CATATG	1 cut(s)	388
NdeII	GATC	2 cut(s)	592, 761
NgoMIV	GCCGGC	1 cut(s)	64
NheI	GCTAGC	1 cut(s)	850
NlaIII	CATG	1 cut(s)	629
NlaIV	GGNNCC	4 cut(s)	69, 110, 142, 958
NmuCI	GTSAC	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 869
PdiI	GCCGGC	1 cut(s)	66
PdmI	GAANNNNTTC	1 cut(s)	694
PfeI	GAWTC	4 cut(s)	245, 308, 779, 937
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	6 cut(s)	226, 229, 232, 340, 532, 811
PleI	GAGTC	2 cut(s)	202, 325
PpsI	GAGTC	2 cut(s)	202, 325
Psp124BI	GAGCTC	1 cut(s)	130
PspN4I	GGNNCC	4 cut(s)	69, 110, 142, 958
PstNI	CAGNNNCTG	1 cut(s)	334
PvuII	CAGCTG	2 cut(s)	530, 587
RsaI	GTAC	2 cut(s)	843, 933
RsaNI	GTAC	2 cut(s)	842, 932
SacI	GAGCTC	1 cut(s)	130
SaqAI	TTAA	7 cut(s)	32, 359, 443, 576, 743, 758, 791
SatI	GCNGC	6 cut(s)	225, 228, 231, 339, 531, 810
Sau3AI	GATC	2 cut(s)	592, 761
SchI	GAGTC	2 cut(s)	202, 325
SduI	GDGCHC	3 cut(s)	130, 145, 959
SfaNI	GCATC	3 cut(s)	262, 354, 381
SfcI	CTRYAG	1 cut(s)	813
Sse9I	AATT	9 cut(s)	116, 216, 293, 538, 561, 702, 825, 874, 981
SsiI	CCGC	6 cut(s)	71, 106, 132, 228, 339, 616
SspMI	CTAG	2 cut(s)	45, 851
SstI	GAGCTC	1 cut(s)	130
TaiI	ACGT	2 cut(s)	14, 921
TaqI	TCGA	3 cut(s)	56, 211, 248
TasI	AATT	9 cut(s)	116, 216, 293, 538, 561, 702, 825, 874, 981
TatI	WGTACW	1 cut(s)	931
TauI	GCSGC	2 cut(s)	230, 341
TfiI	GAWTC	4 cut(s)	245, 308, 779, 937
Tru1I	TTAA	7 cut(s)	32, 359, 443, 576, 743, 758, 791
Tru9I	TTAA	7 cut(s)	32, 359, 443, 576, 743, 758, 791
TscAI	CASTG	4 cut(s)	192, 505, 558, 901
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	4 cut(s)	224, 230, 530, 809
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	2 cut(s)	75, 614
TspGWI	ACGGA	1 cut(s)	211
TspRI	CASTG	4 cut(s)	192, 505, 558, 901
XapI	RAATTY	3 cut(s)	538, 874, 981
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	694
XspI	CTAG	2 cut(s)	45, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.