Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0009460

Physical Location & Seq

Genomic Coordinates Reverse (-)

8379262 .. 8383150

Gene Structure 3889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG100600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGCTCCACGCTATGGTACTACAGAAGAAGCCGGCTCACCAACCGAGGACCCACCGAAAGCGAATGCACCCGGCCCGCACCAGATCGAAAGCACCACGGTGGCGCTTTCCAAAGATTCAGCGGGCTCATCGACTGCCTATTGATTACGTGTCACTCAGCCATCAAATCATTTTCTCTCACTTCCCACCTGAGACGCGTGTACCTCACGCCCCTCGCCGCACTTTAGTGAACTCCACCCCGCTTCTTCTGGGTTTCATGATTTCATCTCTCTCTCTCTCTCTCTCTCTCACTCTCTCTTTATATATAAAGAGCTCCGACGCCTCTTACCTAACCTCTTCGTCAGCTCCGTCTCAATTTTTAAGCCCCCTTTGTCAAACTCTCACAATGAGCGTGACGTTGCAGTCGGTCTCTCTCATAAACCCTAACCCTAGCTCTCGCTTCCAGAAGGCGGCGGCGACGACGACTCCGGTAGCCTTGTGTTCTCGGCGGTTCGATCATTTCGTCGGTGCTCGCGGTTATGGAGGAGCTCCGGTTGCCGTTCCGAAAGGGCTCGGCTGTGGTGGCTCGCTGTCTCTGAGCCGGCGGAGCTTGTGGTGCCGGCCAATTGTAGCCGTCGCTGCCTCGCAAGATGAATCGAAGCATCCAGAGGTTGAGGTGGAGAAGGAAAAGGAAAGTGCCAAGTTGAAAGCTGAAGAATCAGAAGAAGCTTGGGAACAGACTTTGGCTTCTTTCAAAGAACAAGCTTTAAAGATGCAAAGTGTCTCACAGGAAGCGTATGAGATATATTCTAAGAAAGCCTTGGTTATTTTGAAGGAAACGTCAGAGCAGTTGAAAATACAGGCTGATAAGGCAAGGTATGATATCACTGAGATAGCTAAAGAGATCAGCGTTGAAGGTAAAGAATATATCTCCACAGCCGCAAAGAATTCCCCTGAACCAGTGAAGGAAATTGTTGAAACATTCAATTCATCAACAGACGATCTGAATGACGTCACAAAAATCCGCGACTTTCATGTTGGGATACCATATGGTATAGCTTATGAGAAAAATGACAATGATGCCTGCTTTATTTTCTTTTGTTTTTCATCAACAATTGCAATTTTGATTTTGGTGCAGGTCTGGTTCTTTCTCTTGGCGGCTTCCTTTCCTTCATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

385

Amino Acids

43.0

Weight (kDa)

9.23

Isoelectric Point (pI)

51.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38550
fragaria_vesca	FvH4_6g09820 FvH4_6g09820 FvH4_6g09820 FvH4_6g09820
malus_domestica	MD04G1175000.v1.1 MD12G1188700.v1.1
prunus_persica	Prupe.6G294000_v2.0.a1 Prupe.6G294000_v2.0.a1
pyrus_communis	pycom04g15440
rosa_chinensis	RchiOBHm_Chr3g0460431
rosa_laevigata	RLG00000025012
rosa_multiflora	Rmu_sc0004267.1_g000011 Rmu_sc0021028.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419490
rosa_rugosa	Rorug03G0042600 Rorug03G0042600
rosa_samantha	Rh3AG100600 Rh3BG104600 Rh3CG106400 Rh3DG105900
rosa_wichuraiana	Rw3G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	400
AatII	GACGTC	1 cut(s)	993
Acc36I	ACCTGC	1 cut(s)	1105
AccB1I	GGYRCC	1 cut(s)	594
AccB7I	CCANNNNNTGG	1 cut(s)	13
AccII	CGCG	3 cut(s)	196, 513, 1005
AcoI	YGGCCR	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	925
AcuI	CTGAAG	1 cut(s)	711
AcyI	GRCGYC	2 cut(s)	318, 990
AfaI	GTAC	2 cut(s)	18, 201
AfiI	CCNNNNNNNGG	2 cut(s)	13, 448
AflIII	ACRYGT	2 cut(s)	147, 194
AgsI	TTSAA	7 cut(s)	685, 733, 811, 832, 893, 956, 964
AleI	CACNNNNGTG	2 cut(s)	97, 224
Alw21I	GWGCWC	3 cut(s)	314, 511, 529
Alw26I	GTCTC	5 cut(s)	185, 354, 412, 576, 766
AoxI	GGCC	2 cut(s)	72, 599
ApeKI	GCWGC	1 cut(s)	617
ApoI	RAATTY	1 cut(s)	925
AspLEI	GCGC	1 cut(s)	105
AspS9I	GGNCC	2 cut(s)	48, 73
AsuC2I	CCSGG	1 cut(s)	71
AsuHPI	GGTGA	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	48
BaeI	ACNNNNGTAYC	2 cut(s)	183, 216
BanI	GGYRCC	1 cut(s)	594
BanII	GRGCYC	4 cut(s)	127, 314, 529, 552
Bbv12I	GWGCWC	3 cut(s)	314, 511, 529
BbvI	GCAGC	1 cut(s)	604
BccI	CCATC	1 cut(s)	168
BceAI	ACGGC	2 cut(s)	521, 596
BciVI	GTATCC	1 cut(s)	1014
BcnI	CCSGG	1 cut(s)	71
BcoDI	GTCTC	5 cut(s)	185, 354, 412, 576, 766
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	1 cut(s)	20
BfoI	RGCGCY	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	1105
BfuI	GTATCC	1 cut(s)	1014
BisI	GCNGC	6 cut(s)	217, 450, 453, 618, 918, 1137
BlsI	GCNGC	6 cut(s)	218, 451, 454, 619, 919, 1138
Bme1390I	CCNGG	1 cut(s)	71
Bme18I	GGWCC	1 cut(s)	48
BmgT120I	GGNCC	2 cut(s)	48, 73
BmiI	GGNNCC	2 cut(s)	50, 596
BmrFI	CCNGG	1 cut(s)	71
BmsI	GCATC	3 cut(s)	649, 741, 1048
BpuMI	CCSGG	1 cut(s)	71
BsaAI	YACGTR	1 cut(s)	148
BsaHI	GRCGYC	2 cut(s)	318, 990
BsaI	GGTCTC	1 cut(s)	412
BsaJI	CCNNGG	3 cut(s)	44, 95, 798
BsaWI	WCCGGW	2 cut(s)	466, 529
BsaXI	ACNNNNNCTCC	4 cut(s)	448, 478, 516, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	13, 448
Bse118I	RCCGGY	3 cut(s)	31, 579, 597
Bse1I	ACTGG	1 cut(s)	938
BseDI	CCNNGG	3 cut(s)	44, 95, 798
BseGI	GGATG	1 cut(s)	640
BseLI	CCNNNNNNNGG	2 cut(s)	13, 448
BseMII	CTCAG	4 cut(s)	169, 180, 566, 858
BseNI	ACTGG	1 cut(s)	938
BseRI	GAGGAG	1 cut(s)	537
BseXI	GCAGC	1 cut(s)	604
BsgI	GTGCAG	1 cut(s)	1133
Bsh1236I	CGCG	3 cut(s)	196, 513, 1005
BshFI	GGCC	2 cut(s)	74, 601
BshNI	GGYRCC	1 cut(s)	594
BsiHKAI	GWGCWC	3 cut(s)	314, 511, 529
BsiSI	CCGG	6 cut(s)	32, 71, 467, 530, 580, 598
BslI	CCNNNNNNNGG	2 cut(s)	13, 448
BsmAI	GTCTC	5 cut(s)	185, 354, 412, 576, 766
BsmBI	CGTCTC	2 cut(s)	185, 354
BsmI	GAATGC	1 cut(s)	69
BsnI	GGCC	2 cut(s)	74, 601
Bso31I	GGTCTC	1 cut(s)	412
Bsp1286I	GDGCHC	5 cut(s)	127, 314, 511, 529, 552
Bsp143I	GATC	4 cut(s)	83, 493, 882, 979
BspANI	GGCC	2 cut(s)	74, 601
BspCNI	CTCAG	4 cut(s)	168, 181, 567, 859
BspFNI	CGCG	3 cut(s)	196, 513, 1005
BspHI	TCATGA	1 cut(s)	255
BspLI	GGNNCC	2 cut(s)	50, 596
BspMI	ACCTGC	1 cut(s)	1105
BspT107I	GGYRCC	1 cut(s)	594
BspTNI	GGTCTC	1 cut(s)	412
BsrFI	RCCGGY	3 cut(s)	31, 579, 597
BsrI	ACTGG	1 cut(s)	938
BssAI	RCCGGY	3 cut(s)	31, 579, 597
BssECI	CCNNGG	3 cut(s)	44, 95, 798
BssMI	GATC	4 cut(s)	83, 493, 882, 979
BssNI	GRCGYC	2 cut(s)	318, 990
BssT1I	CCWWGG	1 cut(s)	798
Bst4CI	ACNGT	1 cut(s)	99
Bst6I	CTCTTC	1 cut(s)	340
BstACI	GRCGYC	2 cut(s)	318, 990
BstBAI	YACGTR	1 cut(s)	148
BstC8I	GCNNGC	8 cut(s)	33, 76, 123, 511, 566, 581, 599, 1063
BstDEI	CTNAG	5 cut(s)	155, 189, 575, 789, 867
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	640
BstFNI	CGCG	3 cut(s)	196, 513, 1005
BstH2I	RGCGCY	1 cut(s)	106
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	4 cut(s)	86, 496, 885, 982
BstMAI	GTCTC	5 cut(s)	185, 354, 412, 576, 766
BstMBI	GATC	4 cut(s)	83, 493, 882, 979
BstMWI	GCNNNNNNNGC	6 cut(s)	533, 561, 585, 594, 617, 848
BstSCI	CCNGG	1 cut(s)	69
BstSFI	CTRYAG	1 cut(s)	20
BstUI	CGCG	3 cut(s)	196, 513, 1005
BstV1I	GCAGC	1 cut(s)	604
BsuI	GTATCC	1 cut(s)	1014
BsuRI	GGCC	2 cut(s)	74, 601
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	640
BtsIMutI	CAGTG	2 cut(s)	864, 945
BveI	ACCTGC	1 cut(s)	1105
Cac8I	GCNNGC	8 cut(s)	33, 76, 123, 511, 566, 581, 599, 1063
CciI	TCATGA	1 cut(s)	255
CfoI	GCGC	1 cut(s)	105
Cfr10I	RCCGGY	3 cut(s)	31, 579, 597
Cfr13I	GGNCC	2 cut(s)	48, 73
CseI	GACGC	2 cut(s)	202, 326
Csp6I	GTAC	2 cut(s)	17, 200
CviAII	CATG	3 cut(s)	256, 1013, 1152
CviQI	GTAC	2 cut(s)	17, 200
DdeI	CTNAG	5 cut(s)	155, 189, 575, 789, 867
DpnI	GATC	4 cut(s)	85, 495, 884, 981
DpnII	GATC	4 cut(s)	83, 493, 882, 979
DraI	TTTAAA	1 cut(s)	747
DrdI	GACNNNNNNGTC	1 cut(s)	400
DseDI	GACNNNNNNGTC	1 cut(s)	400
EaeI	YGGCCR	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	340
EarI	CTCTTC	1 cut(s)	340
EciI	GGCGGA	1 cut(s)	598
Ecl136II	GAGCTC	2 cut(s)	312, 527
Eco130I	CCWWGG	1 cut(s)	798
Eco24I	GRGCYC	4 cut(s)	127, 314, 529, 552
Eco31I	GGTCTC	1 cut(s)	412
Eco32I	GATATC	1 cut(s)	862
Eco47I	GGWCC	1 cut(s)	48
Eco53kI	GAGCTC	2 cut(s)	312, 527
Eco57I	CTGAAG	1 cut(s)	711
EcoICRI	GAGCTC	2 cut(s)	312, 527
EcoO109I	RGGNCCY	1 cut(s)	48
EcoRI	GAATTC	1 cut(s)	925
EcoRV	GATATC	1 cut(s)	862
EcoT14I	CCWWGG	1 cut(s)	798
EcoT38I	GRGCYC	4 cut(s)	127, 314, 529, 552
ErhI	CCWWGG	1 cut(s)	798
Esp3I	CGTCTC	2 cut(s)	185, 354
FaeI	CATG	3 cut(s)	259, 1016, 1155
FalI	AAGNNNNNCTT	2 cut(s)	782, 814
FatI	CATG	3 cut(s)	255, 1012, 1151
FauI	CCCGC	3 cut(s)	83, 114, 246
FauNDI	CATATG	1 cut(s)	1027
Fnu4HI	GCNGC	6 cut(s)	217, 450, 453, 618, 918, 1137
FokI	GGATG	1 cut(s)	627
FriOI	GRGCYC	4 cut(s)	127, 314, 529, 552
Fsp4HI	GCNGC	6 cut(s)	217, 450, 453, 618, 918, 1137
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	6 cut(s)	217, 450, 453, 618, 918, 1137
HaeII	RGCGCY	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	74, 601
HapII	CCGG	6 cut(s)	32, 71, 467, 530, 580, 598
HgaI	GACGC	2 cut(s)	202, 326
HhaI	GCGC	1 cut(s)	105
Hin1I	GRCGYC	2 cut(s)	318, 990
Hin1II	CATG	3 cut(s)	259, 1016, 1155
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HindIII	AAGCTT	2 cut(s)	705, 741
HinfI	GANTC	4 cut(s)	115, 463, 632, 695
HpaII	CCGG	6 cut(s)	32, 71, 467, 530, 580, 598
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	2 cut(s)	200, 229
Hpy188I	TCNGA	6 cut(s)	316, 543, 576, 700, 823, 984
Hpy188III	TCNNGA	3 cut(s)	256, 442, 644
Hpy8I	GTNNAC	2 cut(s)	200, 229
Hpy99I	CGWCG	5 cut(s)	320, 460, 463, 506, 617
HpyAV	CCTTC	6 cut(s)	439, 655, 805, 887, 937, 1158
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4IV	ACGT	4 cut(s)	147, 395, 818, 990
HpyCH4V	TGCA	5 cut(s)	67, 400, 754, 1097, 1114
HpyF10VI	GCNNNNNNNGC	6 cut(s)	533, 561, 585, 594, 617, 848
HpyF3I	CTNAG	5 cut(s)	155, 189, 575, 789, 867
HpySE526I	ACGT	4 cut(s)	147, 395, 818, 990
Hsp92I	GRCGYC	2 cut(s)	318, 990
Hsp92II	CATG	3 cut(s)	259, 1016, 1155
HspAI	GCGC	1 cut(s)	103
KroI	GCCGGC	3 cut(s)	31, 579, 597
KroNI	GCCGGC	3 cut(s)	33, 581, 599
Kzo9I	GATC	4 cut(s)	83, 493, 882, 979
LmnI	GCTCC	6 cut(s)	9, 317, 349, 524, 532, 585
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	3 cut(s)	649, 741, 1048
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	4 cut(s)	147, 395, 818, 990
MaeIII	GTNAC	3 cut(s)	150, 391, 991
MalI	GATC	4 cut(s)	85, 495, 884, 981
MboI	GATC	4 cut(s)	83, 493, 882, 979
MboII	GAAGA	5 cut(s)	37, 236, 327, 704, 713
MfeI	CAATTG	2 cut(s)	603, 1092
MhlI	GDGCHC	5 cut(s)	127, 314, 511, 529, 552
MluCI	AATT	7 cut(s)	353, 603, 925, 948, 964, 1092, 1098
MluI	ACGCGT	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	457
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	9 cut(s)	39, 213, 222, 331, 343, 515, 631, 640, 646
MroNI	GCCGGC	3 cut(s)	31, 579, 597
MseI	TTAA	2 cut(s)	359, 746
MslI	CAYNNNNRTG	2 cut(s)	97, 224
MspA1I	CMGCKG	1 cut(s)	121
MspI	CCGG	6 cut(s)	32, 71, 467, 530, 580, 598
MspR9I	CCNGG	1 cut(s)	71
MunI	CAATTG	2 cut(s)	603, 1092
Mva1269I	GAATGC	1 cut(s)	69
MvnI	CGCG	3 cut(s)	196, 513, 1005
MwoI	GCNNNNNNNGC	6 cut(s)	533, 561, 585, 594, 617, 848
NaeI	GCCGGC	3 cut(s)	33, 581, 599
NciI	CCSGG	1 cut(s)	71
NdeI	CATATG	1 cut(s)	1027
NdeII	GATC	4 cut(s)	83, 493, 882, 979
NgoMIV	GCCGGC	3 cut(s)	31, 579, 597
NlaIII	CATG	3 cut(s)	259, 1016, 1155
NlaIV	GGNNCC	2 cut(s)	50, 596
NmeAIII	GCCGAG	2 cut(s)	463, 531
NmuCI	GTSAC	3 cut(s)	150, 391, 991
OliI	CACNNNNGTG	2 cut(s)	97, 224
PagI	TCATGA	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	2 cut(s)	344, 498
PctI	GAATGC	1 cut(s)	69
PdiI	GCCGGC	3 cut(s)	33, 581, 599
PfeI	GAWTC	3 cut(s)	115, 632, 695
PflMI	CCANNNNNTGG	1 cut(s)	13
PkrI	GCNGC	6 cut(s)	218, 451, 454, 619, 919, 1138
PleI	GAGTC	1 cut(s)	457
PpsI	GAGTC	1 cut(s)	457
Ppu21I	YACGTR	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	48
Psp124BI	GAGCTC	2 cut(s)	314, 529
Psp5II	RGGWCCY	1 cut(s)	48
PspN4I	GGNNCC	2 cut(s)	50, 596
PspPI	GGNCC	2 cut(s)	48, 73
PspPPI	RGGWCCY	1 cut(s)	48
RsaI	GTAC	2 cut(s)	18, 201
RsaNI	GTAC	2 cut(s)	17, 200
RseI	CAYNNNNRTG	2 cut(s)	97, 224
SacI	GAGCTC	2 cut(s)	314, 529
SaqAI	TTAA	2 cut(s)	359, 746
SatI	GCNGC	6 cut(s)	217, 450, 453, 618, 918, 1137
Sau3AI	GATC	4 cut(s)	83, 493, 882, 979
Sau96I	GGNCC	2 cut(s)	48, 73
SchI	GAGTC	1 cut(s)	457
ScrFI	CCNGG	1 cut(s)	71
SduI	GDGCHC	5 cut(s)	127, 314, 511, 529, 552
SfaNI	GCATC	3 cut(s)	649, 741, 1048
SfcI	CTRYAG	1 cut(s)	20
SinI	GGWCC	1 cut(s)	48
SmiMI	CAYNNNNRTG	2 cut(s)	97, 224
Sse9I	AATT	7 cut(s)	353, 603, 925, 948, 964, 1092, 1098
SspMI	CTAG	1 cut(s)	429
SstI	GAGCTC	2 cut(s)	314, 529
StyD4I	CCNGG	1 cut(s)	69
StyI	CCWWGG	1 cut(s)	798
TaaI	ACNGT	1 cut(s)	99
TaiI	ACGT	4 cut(s)	150, 398, 821, 993
TaqI	TCGA	4 cut(s)	86, 130, 492, 635
TaqII	GACCGA	1 cut(s)	394
TasI	AATT	7 cut(s)	353, 603, 925, 948, 964, 1092, 1098
TauI	GCSGC	5 cut(s)	219, 452, 455, 920, 1139
TfiI	GAWTC	3 cut(s)	115, 632, 695
Tru1I	TTAA	2 cut(s)	359, 746
Tru9I	TTAA	2 cut(s)	359, 746
TscAI	CASTG	2 cut(s)	871, 945
TseFI	GTSAC	3 cut(s)	150, 391, 991
TseI	GCWGC	1 cut(s)	617
Tsp45I	GTSAC	3 cut(s)	150, 391, 991
TspDTI	ATGAA	7 cut(s)	244, 252, 645, 957, 1001, 1074, 1140
TspGWI	ACGGA	1 cut(s)	336
TspRI	CASTG	2 cut(s)	871, 945
Van91I	CCANNNNNTGG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	48
XapI	RAATTY	1 cut(s)	925
XspI	CTAG	1 cut(s)	429
ZraI	GACGTC	1 cut(s)	991

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.