Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0009460

Physical Location & Seq

Genomic Coordinates Forward (+)

41311559 .. 41313987

Gene Structure 2429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025012

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAGCGTGACGTTGCAGTCGGTCTCTCTCTTAAACCCTAACCCTAGCTCTCGCTTCCAGAAGGCGGCGGCGGCGGCGACGACTCCGGTAGCCTTGTGTTCTCGGCGGTTCGATCAATTCGTCGGTGCTCGCGGTTTTGGAGGAGCTCCGATTGCCGTTCAGAAAGGCCTCGGCTGTGGTGGCTCGCTGTCTCTGAGCCGGCGGAGCTTGTGGTGCCGGCCAATTGTAGCCGTCGCTGCCTCGCAAGATGAATCGAAGCATCCAGAGGTTGAGGTGGAGAAGGAAAAGGAAAATGCCAAGTTGAAAGCTGAAGAATCAGAAGAAGCTTGGGAACAGACTTTGGCTTCTTTCAAAGAACAAGCTTTAAAGATGCAAAGTGTCTCACAGGAAGCGTATGAGATATATTCTAAGAAAGCCTTGGTTATTTTGAAGGAAACTTCAGAGCAGTTGAAAATACAGGCTGATAAGGCAAGGTATGATATCACTGAGATAGCTAAAGAGATCAGCGTTGAAGGTAAAGAATATATCTCCACAGCCGCAAAGAATTCCCCTGAACCAGTGAAGGAAATTGTTGAAACATTCAATTCATCAACTGACGATCTGAATGACGTCACAAAAATCCGCGACTTTCATGTTGGGATACCATATGGTCTGGTTCTTTCTCTTGGTGGCTTCCTTTCCTTCATGGTAACAGGAAGCACTGCTGGAATTAGGTTTGGGGTTATCCTTGGTGGCATTCTTTTGGCTTTCAGTGTTTCAAGTTTGAGATCATATAAGCACGGAGAATCATTTCCTTTGGCCTTGAAAGGGCAGGCAGCTATAGCCGGTATAATTTTTCTGAGGGAGACATGCCTACTGACTCAGAGATCATGGATTCCATATTTGTTGAGAACCCTTGTCAGTGGAGAAAGTTGGAGTATGTACAAGCAAAAGAGAAGTAACCATCTTGGGATGCTCCGGGCTAGGATGTTTGCTGAACTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

328

Amino Acids

35.86

Weight (kDa)

8.89

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_14	PF03647	212 - 302	2.4e-12	Transmembrane proteins 14C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38550
fragaria_vesca	FvH4_6g09820 FvH4_6g09820 FvH4_6g09820 FvH4_6g09820
malus_domestica	MD04G1175000.v1.1 MD12G1188700.v1.1
prunus_persica	Prupe.6G294000_v2.0.a1 Prupe.6G294000_v2.0.a1
pyrus_communis	pycom04g15440
rosa_chinensis	RchiOBHm_Chr3g0460431
rosa_laevigata	RLG00000025012
rosa_multiflora	Rmu_sc0004267.1_g000011 Rmu_sc0021028.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419490
rosa_rugosa	Rorug03G0042600 Rorug03G0042600
rosa_samantha	Rh3AG100600 Rh3BG104600 Rh3CG106400 Rh3DG105900
rosa_wichuraiana	Rw3G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AatII	GACGTC	1 cut(s)	612
AccB1I	GGYRCC	1 cut(s)	213
AccII	CGCG	2 cut(s)	132, 624
AciI	CCGC	9 cut(s)	65, 68, 71, 74, 106, 132, 202, 537, 622
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	544
AcuI	CTGAAG	2 cut(s)	330, 423
AcyI	GRCGYC	1 cut(s)	609
AfaI	GTAC	1 cut(s)	923
AfiI	CCNNNNNNNGG	2 cut(s)	64, 807
AgsI	TTSAA	9 cut(s)	304, 352, 430, 451, 512, 575, 583, 759, 805
AluBI	AGCT	8 cut(s)	48, 146, 207, 308, 326, 362, 494, 818
AluI	AGCT	8 cut(s)	48, 146, 207, 308, 326, 362, 494, 818
Alw21I	GWGCWC	2 cut(s)	130, 148
Alw26I	GTCTC	4 cut(s)	28, 195, 385, 839
AoxI	GGCC	3 cut(s)	166, 218, 798
ApeKI	GCWGC	2 cut(s)	236, 815
ApoI	RAATTY	1 cut(s)	544
Asp700I	GAANNNNTTC	1 cut(s)	789
AsuC2I	CCSGG	1 cut(s)	959
BanI	GGYRCC	1 cut(s)	213
BanII	GRGCYC	1 cut(s)	148
Bbv12I	GWGCWC	2 cut(s)	130, 148
BbvI	GCAGC	2 cut(s)	223, 827
BccI	CCATC	1 cut(s)	951
BceAI	ACGGC	2 cut(s)	140, 215
BciVI	GTATCC	1 cut(s)	633
BcnI	CCSGG	1 cut(s)	959
BcoDI	GTCTC	4 cut(s)	28, 195, 385, 839
BfaI	CTAG	2 cut(s)	45, 963
BfmI	CTRYAG	2 cut(s)	819, 980
BfuI	GTATCC	1 cut(s)	633
BisI	GCNGC	7 cut(s)	66, 69, 72, 75, 237, 537, 816
BlsI	GCNGC	7 cut(s)	67, 70, 73, 76, 238, 538, 817
Bme1390I	CCNGG	1 cut(s)	959
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	959
BmsI	GCATC	3 cut(s)	268, 360, 942
BpuMI	CCSGG	1 cut(s)	959
BsaHI	GRCGYC	1 cut(s)	609
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	169, 417, 727
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 807
Bse118I	RCCGGY	3 cut(s)	198, 216, 824
Bse1I	ACTGG	1 cut(s)	557
BseDI	CCNNGG	3 cut(s)	169, 417, 727
BseGI	GGATG	3 cut(s)	259, 957, 972
BseLI	CCNNNNNNNGG	2 cut(s)	64, 807
BseMII	CTCAG	4 cut(s)	185, 477, 830, 875
BseNI	ACTGG	1 cut(s)	557
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	223, 827
Bsh1236I	CGCG	2 cut(s)	132, 624
BshFI	GGCC	3 cut(s)	168, 220, 800
BshNI	GGYRCC	1 cut(s)	213
BsiHKAI	GWGCWC	2 cut(s)	130, 148
BsiSI	CCGG	5 cut(s)	86, 199, 217, 825, 958
BslI	CCNNNNNNNGG	2 cut(s)	64, 807
BsmAI	GTCTC	4 cut(s)	28, 195, 385, 839
BsmI	GAATGC	1 cut(s)	735
BsnI	GGCC	3 cut(s)	168, 220, 800
Bso31I	GGTCTC	1 cut(s)	28
Bsp1286I	GDGCHC	2 cut(s)	130, 148
Bsp1407I	TGTACA	1 cut(s)	921
Bsp143I	GATC	5 cut(s)	112, 501, 598, 767, 866
BspACI	CCGC	9 cut(s)	65, 68, 71, 74, 106, 132, 202, 537, 622
BspANI	GGCC	3 cut(s)	168, 220, 800
BspCNI	CTCAG	4 cut(s)	186, 478, 831, 874
BspFNI	CGCG	2 cut(s)	132, 624
BspLI	GGNNCC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	213
BspTNI	GGTCTC	1 cut(s)	28
BsrFI	RCCGGY	3 cut(s)	198, 216, 824
BsrGI	TGTACA	1 cut(s)	921
BsrI	ACTGG	1 cut(s)	557
BssAI	RCCGGY	3 cut(s)	198, 216, 824
BssECI	CCNNGG	3 cut(s)	169, 417, 727
BssMI	GATC	5 cut(s)	112, 501, 598, 767, 866
BssNI	GRCGYC	1 cut(s)	609
BssT1I	CCWWGG	2 cut(s)	417, 727
BstACI	GRCGYC	1 cut(s)	609
BstAUI	TGTACA	1 cut(s)	921
BstC8I	GCNNGC	5 cut(s)	130, 185, 200, 218, 813
BstDEI	CTNAG	5 cut(s)	194, 408, 486, 839, 861
BstF5I	GGATG	3 cut(s)	259, 957, 972
BstFNI	CGCG	2 cut(s)	132, 624
BstKTI	GATC	5 cut(s)	115, 504, 601, 770, 869
BstMAI	GTCTC	4 cut(s)	28, 195, 385, 839
BstMBI	GATC	5 cut(s)	112, 501, 598, 767, 866
BstMWI	GCNNNNNNNGC	9 cut(s)	71, 74, 152, 180, 204, 213, 236, 467, 821
BstNSI	RCATGY	1 cut(s)	852
BstSCI	CCNGG	1 cut(s)	957
BstSFI	CTRYAG	2 cut(s)	819, 980
BstUI	CGCG	2 cut(s)	132, 624
BstV1I	GCAGC	2 cut(s)	223, 827
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	3 cut(s)	168, 220, 800
BtsCI	GGATG	3 cut(s)	259, 957, 972
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	5 cut(s)	483, 564, 699, 757, 907
Cac8I	GCNNGC	5 cut(s)	130, 185, 200, 218, 813
Cfr10I	RCCGGY	3 cut(s)	198, 216, 824
Csp6I	GTAC	1 cut(s)	922
CviAII	CATG	4 cut(s)	632, 685, 849, 870
CviQI	GTAC	1 cut(s)	922
DdeI	CTNAG	5 cut(s)	194, 408, 486, 839, 861
DpnI	GATC	5 cut(s)	114, 503, 600, 769, 868
DpnII	GATC	5 cut(s)	112, 501, 598, 767, 866
DraI	TTTAAA	1 cut(s)	366
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	417, 727
Eco147I	AGGCCT	1 cut(s)	168
Eco24I	GRGCYC	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	2 cut(s)	330, 423
EcoICRI	GAGCTC	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	417, 727
EcoT38I	GRGCYC	1 cut(s)	148
ErhI	CCWWGG	2 cut(s)	417, 727
FaeI	CATG	4 cut(s)	635, 688, 852, 873
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	4 cut(s)	631, 684, 848, 869
FauNDI	CATATG	1 cut(s)	646
Fnu4HI	GCNGC	7 cut(s)	66, 69, 72, 75, 237, 537, 816
FokI	GGATG	3 cut(s)	246, 964, 979
FriOI	GRGCYC	1 cut(s)	148
Fsp4HI	GCNGC	7 cut(s)	66, 69, 72, 75, 237, 537, 816
FspBI	CTAG	2 cut(s)	45, 963
GluI	GCNGC	7 cut(s)	66, 69, 72, 75, 237, 537, 816
HaeIII	GGCC	3 cut(s)	168, 220, 800
HapII	CCGG	5 cut(s)	86, 199, 217, 825, 958
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	4 cut(s)	635, 688, 852, 873
HindIII	AAGCTT	2 cut(s)	324, 360
HinfI	GANTC	6 cut(s)	82, 251, 314, 785, 859, 874
HpaII	CCGG	5 cut(s)	86, 199, 217, 825, 958
Hpy188I	TCNGA	8 cut(s)	150, 162, 195, 319, 442, 603, 840, 864
Hpy188III	TCNNGA	2 cut(s)	58, 263
Hpy99I	CGWCG	3 cut(s)	82, 125, 236
HpyAV	CCTTC	6 cut(s)	55, 274, 424, 506, 556, 691
HpyCH4IV	ACGT	2 cut(s)	11, 609
HpyCH4V	TGCA	2 cut(s)	16, 373
HpyF10VI	GCNNNNNNNGC	9 cut(s)	71, 74, 152, 180, 204, 213, 236, 467, 821
HpyF3I	CTNAG	5 cut(s)	194, 408, 486, 839, 861
HpySE526I	ACGT	2 cut(s)	11, 609
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	4 cut(s)	635, 688, 852, 873
KroI	GCCGGC	2 cut(s)	198, 216
KroNI	GCCGGC	2 cut(s)	200, 218
Kzo9I	GATC	5 cut(s)	112, 501, 598, 767, 866
LmnI	GCTCC	4 cut(s)	143, 151, 204, 960
Lsp1109I	GCAGC	2 cut(s)	223, 827
LweI	GCATC	3 cut(s)	268, 360, 942
MaeI	CTAG	2 cut(s)	45, 963
MaeII	ACGT	2 cut(s)	11, 609
MaeIII	GTNAC	4 cut(s)	7, 610, 688, 938
MalI	GATC	5 cut(s)	114, 503, 600, 769, 868
MboI	GATC	5 cut(s)	112, 501, 598, 767, 866
MboII	GAAGA	2 cut(s)	323, 332
MfeI	CAATTG	1 cut(s)	222
MhlI	GDGCHC	2 cut(s)	130, 148
MluCI	AATT	7 cut(s)	116, 222, 544, 567, 583, 708, 831
MlyI	GAGTC	2 cut(s)	76, 853
MmeI	TCCRAC	1 cut(s)	893
MnlI	CCTC	6 cut(s)	134, 179, 250, 259, 265, 834
MroNI	GCCGGC	2 cut(s)	198, 216
MroXI	GAANNNNTTC	1 cut(s)	789
MseI	TTAA	2 cut(s)	32, 365
MspI	CCGG	5 cut(s)	86, 199, 217, 825, 958
MspR9I	CCNGG	1 cut(s)	959
MunI	CAATTG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	735
MvnI	CGCG	2 cut(s)	132, 624
MwoI	GCNNNNNNNGC	9 cut(s)	71, 74, 152, 180, 204, 213, 236, 467, 821
NaeI	GCCGGC	2 cut(s)	200, 218
NciI	CCSGG	1 cut(s)	959
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	5 cut(s)	112, 501, 598, 767, 866
NgoMIV	GCCGGC	2 cut(s)	198, 216
NlaIII	CATG	4 cut(s)	635, 688, 852, 873
NlaIV	GGNNCC	1 cut(s)	215
NmeAIII	GCCGAG	2 cut(s)	82, 150
NmuCI	GTSAC	2 cut(s)	7, 610
NspI	RCATGY	1 cut(s)	852
PceI	AGGCCT	1 cut(s)	168
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	1 cut(s)	735
PdiI	GCCGGC	2 cut(s)	200, 218
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	4 cut(s)	251, 314, 785, 874
PkrI	GCNGC	7 cut(s)	67, 70, 73, 76, 238, 538, 817
PleI	GAGTC	2 cut(s)	76, 853
PpsI	GAGTC	2 cut(s)	76, 853
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	215
RsaI	GTAC	1 cut(s)	923
RsaNI	GTAC	1 cut(s)	922
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	32, 365
SatI	GCNGC	7 cut(s)	66, 69, 72, 75, 237, 537, 816
Sau3AI	GATC	5 cut(s)	112, 501, 598, 767, 866
SchI	GAGTC	2 cut(s)	76, 853
ScrFI	CCNGG	1 cut(s)	959
SduI	GDGCHC	2 cut(s)	130, 148
SfaNI	GCATC	3 cut(s)	268, 360, 942
SfcI	CTRYAG	2 cut(s)	819, 980
Sse9I	AATT	7 cut(s)	116, 222, 544, 567, 583, 708, 831
SseBI	AGGCCT	1 cut(s)	168
SsiI	CCGC	9 cut(s)	65, 68, 71, 74, 106, 132, 202, 537, 622
SspMI	CTAG	2 cut(s)	45, 963
SstI	GAGCTC	1 cut(s)	148
StuI	AGGCCT	1 cut(s)	168
StyD4I	CCNGG	1 cut(s)	957
StyI	CCWWGG	2 cut(s)	417, 727
TaiI	ACGT	2 cut(s)	14, 612
TaqI	TCGA	2 cut(s)	111, 254
TaqII	GACCGA	1 cut(s)	10
TasI	AATT	7 cut(s)	116, 222, 544, 567, 583, 708, 831
TatI	WGTACW	1 cut(s)	921
TauI	GCSGC	5 cut(s)	68, 71, 74, 77, 539
TfiI	GAWTC	4 cut(s)	251, 314, 785, 874
Tru1I	TTAA	2 cut(s)	32, 365
Tru9I	TTAA	2 cut(s)	32, 365
TscAI	CASTG	5 cut(s)	490, 564, 706, 757, 907
TseFI	GTSAC	2 cut(s)	7, 610
TseI	GCWGC	2 cut(s)	236, 815
Tsp45I	GTSAC	2 cut(s)	7, 610
TspDTI	ATGAA	4 cut(s)	264, 576, 620, 673
TspGWI	ACGGA	1 cut(s)	795
TspRI	CASTG	5 cut(s)	490, 564, 706, 757, 907
XapI	RAATTY	1 cut(s)	544
XceI	RCATGY	1 cut(s)	852
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	2 cut(s)	45, 963
ZraI	GACGTC	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.