Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021028.1

Orthogroup ID

OG0009460

Physical Location & Seq

Genomic Coordinates Reverse (-)

4108 .. 5694

Gene Structure 1587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021028.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgattgaggcttggtttattggttcactcatttgtttcctacttgttttgttttcgtttcatttgcagaagcatccagaggttgaggtggagaaggaaaaggaaagtgccaagttgaaagctgaagaatcagaagaagcttgggaacagactttggcttctttcaaagaacaagctttaaagatgcaaagtgtctcacaggaagcgtatgagatatattctaagaaagccttggttgttttgaaggaaacgtcagagcagttgaaaatacaggctgataaggcaaggtatgatatcactgagatagctaaagagatcagcgttgaaggtaaagaatatatctccacagccgcaaagaattcccctgagccagtgaaggaaattgttgaaacattcaattcatcaacagacgatctgaatgacgtcacaaaaatccgcgactttcatgttgggataccatatggtctggttctttctcttggtggcttcctttccttcatggtaacaggaagcactgctggaattaggtttggggttatccttggtggcattcttttggctttcagtgtttcaagtttgagatcatataagcaaggagaatcatttcctttggccttgaaagggcaggcagctatagccagtataatttttctgagggagacatgcctactggctcagagatcatggattccatatttgttgagaacccttgtcagtggaggtgttgtagctttctatgtctataggattgtacagaatggtaaacaccaaaaagattcgagctttgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

263

Amino Acids

29.36

Weight (kDa)

5.74

Isoelectric Point (pI)

38.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38550
fragaria_vesca	FvH4_6g09820 FvH4_6g09820 FvH4_6g09820 FvH4_6g09820
malus_domestica	MD04G1175000.v1.1 MD12G1188700.v1.1
prunus_persica	Prupe.6G294000_v2.0.a1 Prupe.6G294000_v2.0.a1
pyrus_communis	pycom04g15440
rosa_chinensis	RchiOBHm_Chr3g0460431
rosa_laevigata	RLG00000025012
rosa_multiflora	Rmu_sc0004267.1_g000011 Rmu_sc0021028.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419490
rosa_rugosa	Rorug03G0042600 Rorug03G0042600
rosa_samantha	Rh3AG100600 Rh3BG104600 Rh3CG106400 Rh3DG105900
rosa_wichuraiana	Rw3G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	426
AccII	CGCG	1 cut(s)	438
AciI	CCGC	2 cut(s)	351, 436
AcsI	RAATTY	1 cut(s)	358
AcuI	CTGAAG	1 cut(s)	144
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	1 cut(s)	753
AfiI	CCNNNNNNNGG	1 cut(s)	621
AluBI	AGCT	7 cut(s)	122, 140, 176, 308, 632, 731, 783
AluI	AGCT	7 cut(s)	122, 140, 176, 308, 632, 731, 783
Alw26I	GTCTC	2 cut(s)	199, 653
AoxI	GGCC	1 cut(s)	612
ApeKI	GCWGC	1 cut(s)	629
ApoI	RAATTY	1 cut(s)	358
Asp700I	GAANNNNTTC	1 cut(s)	603
BbvI	GCAGC	1 cut(s)	641
BciVI	GTATCC	1 cut(s)	447
BcoDI	GTCTC	2 cut(s)	199, 653
BfmI	CTRYAG	2 cut(s)	633, 742
BfuI	GTATCC	1 cut(s)	447
BisI	GCNGC	2 cut(s)	351, 630
BlsI	GCNGC	2 cut(s)	352, 631
BmsI	GCATC	2 cut(s)	82, 174
Bpu10I	CCTNAGC	1 cut(s)	366
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	2 cut(s)	231, 541
BsaXI	ACNNNNNCTCC	2 cut(s)	711, 741
Bsc4I	CCNNNNNNNGG	1 cut(s)	621
Bse1I	ACTGG	3 cut(s)	371, 639, 675
BseDI	CCNNGG	2 cut(s)	231, 541
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	621
BseMII	CTCAG	4 cut(s)	291, 357, 644, 689
BseNI	ACTGG	3 cut(s)	371, 639, 675
BseXI	GCAGC	1 cut(s)	641
Bsh1236I	CGCG	1 cut(s)	438
BshFI	GGCC	1 cut(s)	614
BslI	CCNNNNNNNGG	1 cut(s)	621
BsmAI	GTCTC	2 cut(s)	199, 653
BsmI	GAATGC	1 cut(s)	549
BsnI	GGCC	1 cut(s)	614
Bsp1407I	TGTACA	1 cut(s)	751
Bsp143I	GATC	4 cut(s)	315, 412, 581, 680
BspACI	CCGC	2 cut(s)	351, 436
BspANI	GGCC	1 cut(s)	614
BspCNI	CTCAG	4 cut(s)	292, 358, 645, 688
BspFNI	CGCG	1 cut(s)	438
BsrGI	TGTACA	1 cut(s)	751
BsrI	ACTGG	3 cut(s)	371, 639, 675
BssECI	CCNNGG	2 cut(s)	231, 541
BssMI	GATC	4 cut(s)	315, 412, 581, 680
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	2 cut(s)	231, 541
BstACI	GRCGYC	1 cut(s)	423
BstAUI	TGTACA	1 cut(s)	751
BstC8I	GCNNGC	1 cut(s)	627
BstDEI	CTNAG	5 cut(s)	222, 300, 366, 653, 675
BstF5I	GGATG	1 cut(s)	73
BstFNI	CGCG	1 cut(s)	438
BstKTI	GATC	4 cut(s)	318, 415, 584, 683
BstMAI	GTCTC	2 cut(s)	199, 653
BstMBI	GATC	4 cut(s)	315, 412, 581, 680
BstMWI	GCNNNNNNNGC	2 cut(s)	281, 635
BstNSI	RCATGY	1 cut(s)	666
BstSFI	CTRYAG	2 cut(s)	633, 742
BstUI	CGCG	1 cut(s)	438
BstV1I	GCAGC	1 cut(s)	641
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	1 cut(s)	614
BtsCI	GGATG	1 cut(s)	73
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	5 cut(s)	297, 378, 513, 571, 721
Cac8I	GCNNGC	1 cut(s)	627
Csp6I	GTAC	1 cut(s)	752
CviAII	CATG	4 cut(s)	446, 499, 663, 684
CviQI	GTAC	1 cut(s)	752
DdeI	CTNAG	5 cut(s)	222, 300, 366, 653, 675
DpnI	GATC	4 cut(s)	317, 414, 583, 682
DpnII	GATC	4 cut(s)	315, 412, 581, 680
DraI	TTTAAA	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	231, 541
Eco32I	GATATC	1 cut(s)	295
Eco57I	CTGAAG	1 cut(s)	144
EcoRI	GAATTC	1 cut(s)	358
EcoRV	GATATC	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	231, 541
ErhI	CCWWGG	2 cut(s)	231, 541
FaeI	CATG	4 cut(s)	449, 502, 666, 687
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	4 cut(s)	445, 498, 662, 683
FauNDI	CATATG	1 cut(s)	460
Fnu4HI	GCNGC	2 cut(s)	351, 630
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	2 cut(s)	351, 630
GluI	GCNGC	2 cut(s)	351, 630
HaeIII	GGCC	1 cut(s)	614
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	4 cut(s)	449, 502, 666, 687
HindIII	AAGCTT	2 cut(s)	138, 174
HinfI	GANTC	4 cut(s)	128, 599, 688, 776
Hpy166II	GTNNAC	2 cut(s)	26, 764
Hpy188I	TCNGA	5 cut(s)	133, 256, 417, 654, 678
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	2 cut(s)	26, 764
HpyAV	CCTTC	5 cut(s)	88, 238, 320, 370, 505
HpyCH4IV	ACGT	2 cut(s)	251, 423
HpyCH4V	TGCA	2 cut(s)	67, 187
HpyF10VI	GCNNNNNNNGC	2 cut(s)	281, 635
HpyF3I	CTNAG	5 cut(s)	222, 300, 366, 653, 675
HpySE526I	ACGT	2 cut(s)	251, 423
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	4 cut(s)	449, 502, 666, 687
Kzo9I	GATC	4 cut(s)	315, 412, 581, 680
Lsp1109I	GCAGC	1 cut(s)	641
LweI	GCATC	2 cut(s)	82, 174
MaeII	ACGT	2 cut(s)	251, 423
MaeIII	GTNAC	2 cut(s)	424, 502
MalI	GATC	4 cut(s)	317, 414, 583, 682
MboI	GATC	4 cut(s)	315, 412, 581, 680
MboII	GAAGA	2 cut(s)	137, 146
MluCI	AATT	5 cut(s)	358, 381, 397, 522, 645
MnlI	CCTC	4 cut(s)	73, 79, 648, 713
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	549
MvnI	CGCG	1 cut(s)	438
MwoI	GCNNNNNNNGC	2 cut(s)	281, 635
NdeI	CATATG	1 cut(s)	460
NdeII	GATC	4 cut(s)	315, 412, 581, 680
NlaIII	CATG	4 cut(s)	449, 502, 666, 687
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	666
PctI	GAATGC	1 cut(s)	549
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	4 cut(s)	128, 599, 688, 776
PkrI	GCNGC	2 cut(s)	352, 631
RsaI	GTAC	1 cut(s)	753
RsaNI	GTAC	1 cut(s)	752
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	2 cut(s)	351, 630
Sau3AI	GATC	4 cut(s)	315, 412, 581, 680
SfaNI	GCATC	2 cut(s)	82, 174
SfcI	CTRYAG	2 cut(s)	633, 742
Sse9I	AATT	5 cut(s)	358, 381, 397, 522, 645
SsiI	CCGC	2 cut(s)	351, 436
StyI	CCWWGG	2 cut(s)	231, 541
TaiI	ACGT	2 cut(s)	254, 426
TaqI	TCGA	1 cut(s)	779
TasI	AATT	5 cut(s)	358, 381, 397, 522, 645
TatI	WGTACW	1 cut(s)	751
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	4 cut(s)	128, 599, 688, 776
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	5 cut(s)	304, 378, 520, 571, 721
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	1 cut(s)	629
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	4 cut(s)	50, 390, 434, 487
TspRI	CASTG	5 cut(s)	304, 378, 520, 571, 721
XapI	RAATTY	1 cut(s)	358
XceI	RCATGY	1 cut(s)	666
XmnI	GAANNNNTTC	1 cut(s)	603
ZraI	GACGTC	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.