Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0009460

Physical Location & Seq

Genomic Coordinates Forward (+)

40948057 .. 40950964

Gene Structure 2908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00419490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGAGCGTGACGTTGCAGTCGGTCTCTCTCTTAAACCCTAACCCTAGCTCTCGCTTCCAGAAGGCGGCGGCGACGACGACTCCGGTAGCCTTGTGTTCTCGGCGGTTCGATCATTTCGTCGGTGCTCGCGGTTATGGAGGAGCTCCGGTTTCCGTTCCGAAAGGGCTCGGCTGTGGTGGCTCGCTGTCTCTGAGCCGGCGGAGCTTGTGGTGCCGGCCAATTGTAGCCGTCGCTGCCTCGCAAGATGAATCGAAGCATCCGGAGGTTGAGGTGGAGAAGGAAAAGGAAAGTGCCAAGTTGAAAGCTGAAGAATCAGAAGAAGCTTGGGAACAAACTTTGGCTTCTTTCAAAGAACAAGCTTTAAAGATGCAAAGTGTCTCCCAGGAAGCGTATGAGATATATTCTAAGAAAGCCTTGGTTATTTTGAAGGAAACGTCAGAGCAGTTGAAAATACAGGCTGATAAGGCAAGGTATGATATCACTGAGATAGCTAAAGAGATCAGCGTTGAAGGTAAAGAATATATCTCCACAGCCGCAAAGAATTCCCCTGAACCAGTGAAGGAAATTGTTGAAACATTCAATTCGTCAACTGACGATCTGAATGACGTCACAAAAATCCGCGACTTTCATGTTGGGATACCATATGGTCTGGTTCTTTCTCTTGGTGGCTTCCTTTCCTTCATGGTAACAGGAAGCACTGCTGGTATTAGGTTTGGGGTTATCCTTGGTGGCATTCTTTTGGCTTTCAGTGTTTCAAGTTTGAGATCGTATAAGCAAGGAGAATCATTTCCTTTGGCCTTGAAAGGGCAGGCAGCTATAGCCAGTATAATTTTTCTGAGGGAGACATGCCTACTGGCTCAGAGATCATGGATTCCATATTTGTTGAGAACCCTTGTCAGTGGAGGTGTTGTAGCTTTCTATGTCTATAGGATTGTACAGAATGGTAAACACCAAAAAGATTCGAGCTTTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

324

Amino Acids

35.39

Weight (kDa)

8.52

Isoelectric Point (pI)

46.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_14	PF03647	211 - 307	9.3e-13	Transmembrane proteins 14C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38550
fragaria_vesca	FvH4_6g09820 FvH4_6g09820 FvH4_6g09820 FvH4_6g09820
malus_domestica	MD04G1175000.v1.1 MD12G1188700.v1.1
prunus_persica	Prupe.6G294000_v2.0.a1 Prupe.6G294000_v2.0.a1
pyrus_communis	pycom04g15440
rosa_chinensis	RchiOBHm_Chr3g0460431
rosa_laevigata	RLG00000025012
rosa_multiflora	Rmu_sc0004267.1_g000011 Rmu_sc0021028.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419490
rosa_rugosa	Rorug03G0042600 Rorug03G0042600
rosa_samantha	Rh3AG100600 Rh3BG104600 Rh3CG106400 Rh3DG105900
rosa_wichuraiana	Rw3G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	16
AatII	GACGTC	1 cut(s)	609
AccB1I	GGYRCC	1 cut(s)	210
AccII	CGCG	2 cut(s)	129, 621
AccIII	TCCGGA	1 cut(s)	259
AciI	CCGC	7 cut(s)	65, 68, 103, 129, 199, 534, 619
AcoI	YGGCCR	1 cut(s)	215
AcsI	RAATTY	1 cut(s)	541
AcuI	CTGAAG	1 cut(s)	327
AcyI	GRCGYC	1 cut(s)	606
AfaI	GTAC	1 cut(s)	936
AfiI	CCNNNNNNNGG	2 cut(s)	64, 804
AjnI	CCWGG	1 cut(s)	381
Alw21I	GWGCWC	2 cut(s)	127, 145
Alw26I	GTCTC	4 cut(s)	28, 192, 382, 836
Aor13HI	TCCGGA	1 cut(s)	259
AoxI	GGCC	2 cut(s)	215, 795
ApeKI	GCWGC	2 cut(s)	233, 812
ApoI	RAATTY	1 cut(s)	541
Asp700I	GAANNNNTTC	1 cut(s)	786
BanI	GGYRCC	1 cut(s)	210
BanII	GRGCYC	2 cut(s)	145, 168
Bbv12I	GWGCWC	2 cut(s)	127, 145
BbvI	GCAGC	2 cut(s)	220, 824
BceAI	ACGGC	1 cut(s)	212
BciT130I	CCWGG	1 cut(s)	383
BciVI	GTATCC	1 cut(s)	630
BcoDI	GTCTC	4 cut(s)	28, 192, 382, 836
BfaI	CTAG	1 cut(s)	45
BfmI	CTRYAG	2 cut(s)	816, 925
BfuI	GTATCC	1 cut(s)	630
BisI	GCNGC	5 cut(s)	66, 69, 234, 534, 813
BlsI	GCNGC	5 cut(s)	67, 70, 235, 535, 814
Bme1390I	CCNGG	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	1 cut(s)	383
BmsI	GCATC	2 cut(s)	265, 357
BsaHI	GRCGYC	1 cut(s)	606
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	3 cut(s)	381, 414, 724
BsaWI	WCCGGW	3 cut(s)	82, 145, 259
BsaXI	ACNNNNNCTCC	6 cut(s)	64, 94, 132, 162, 894, 924
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 804
Bse118I	RCCGGY	2 cut(s)	195, 213
Bse1I	ACTGG	3 cut(s)	554, 822, 858
BseAI	TCCGGA	1 cut(s)	259
BseBI	CCWGG	1 cut(s)	383
BseDI	CCNNGG	3 cut(s)	381, 414, 724
BseGI	GGATG	1 cut(s)	256
BseLI	CCNNNNNNNGG	2 cut(s)	64, 804
BseMII	CTCAG	4 cut(s)	182, 474, 827, 872
BseNI	ACTGG	3 cut(s)	554, 822, 858
BseRI	GAGGAG	1 cut(s)	153
BseXI	GCAGC	2 cut(s)	220, 824
Bsh1236I	CGCG	2 cut(s)	129, 621
BshFI	GGCC	2 cut(s)	217, 797
BshNI	GGYRCC	1 cut(s)	210
BsiHKAI	GWGCWC	2 cut(s)	127, 145
BsiSI	CCGG	5 cut(s)	83, 146, 196, 214, 260
BslI	CCNNNNNNNGG	2 cut(s)	64, 804
BsmAI	GTCTC	4 cut(s)	28, 192, 382, 836
BsmI	GAATGC	1 cut(s)	732
BsnI	GGCC	2 cut(s)	217, 797
Bso31I	GGTCTC	1 cut(s)	28
Bsp1286I	GDGCHC	3 cut(s)	127, 145, 168
Bsp13I	TCCGGA	1 cut(s)	259
Bsp1407I	TGTACA	1 cut(s)	934
Bsp143I	GATC	5 cut(s)	109, 498, 595, 764, 863
BspACI	CCGC	7 cut(s)	65, 68, 103, 129, 199, 534, 619
BspANI	GGCC	2 cut(s)	217, 797
BspCNI	CTCAG	4 cut(s)	183, 475, 828, 871
BspEI	TCCGGA	1 cut(s)	259
BspFNI	CGCG	2 cut(s)	129, 621
BspLI	GGNNCC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	210
BspTNI	GGTCTC	1 cut(s)	28
BsrFI	RCCGGY	2 cut(s)	195, 213
BsrGI	TGTACA	1 cut(s)	934
BsrI	ACTGG	3 cut(s)	554, 822, 858
BssAI	RCCGGY	2 cut(s)	195, 213
BssECI	CCNNGG	3 cut(s)	381, 414, 724
BssMI	GATC	5 cut(s)	109, 498, 595, 764, 863
BssNI	GRCGYC	1 cut(s)	606
BssT1I	CCWWGG	2 cut(s)	414, 724
Bst2UI	CCWGG	1 cut(s)	383
BstACI	GRCGYC	1 cut(s)	606
BstAUI	TGTACA	1 cut(s)	934
BstC8I	GCNNGC	5 cut(s)	127, 182, 197, 215, 810
BstDEI	CTNAG	5 cut(s)	191, 405, 483, 836, 858
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	2 cut(s)	129, 621
BstKTI	GATC	5 cut(s)	112, 501, 598, 767, 866
BstMAI	GTCTC	4 cut(s)	28, 192, 382, 836
BstMBI	GATC	5 cut(s)	109, 498, 595, 764, 863
BstMWI	GCNNNNNNNGC	6 cut(s)	177, 201, 210, 233, 464, 818
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	1 cut(s)	849
BstSCI	CCNGG	1 cut(s)	381
BstSFI	CTRYAG	2 cut(s)	816, 925
BstUI	CGCG	2 cut(s)	129, 621
BstV1I	GCAGC	2 cut(s)	220, 824
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	2 cut(s)	217, 797
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	5 cut(s)	480, 561, 696, 754, 904
Cac8I	GCNNGC	5 cut(s)	127, 182, 197, 215, 810
Cfr10I	RCCGGY	2 cut(s)	195, 213
Csp6I	GTAC	1 cut(s)	935
CviAII	CATG	4 cut(s)	629, 682, 846, 867
CviQI	GTAC	1 cut(s)	935
DdeI	CTNAG	5 cut(s)	191, 405, 483, 836, 858
DpnI	GATC	5 cut(s)	111, 500, 597, 766, 865
DpnII	GATC	5 cut(s)	109, 498, 595, 764, 863
DraI	TTTAAA	1 cut(s)	363
DrdI	GACNNNNNNGTC	1 cut(s)	16
DseDI	GACNNNNNNGTC	1 cut(s)	16
EaeI	YGGCCR	1 cut(s)	215
EciI	GGCGGA	1 cut(s)	214
Ecl136II	GAGCTC	1 cut(s)	143
Eco130I	CCWWGG	2 cut(s)	414, 724
Eco24I	GRGCYC	2 cut(s)	145, 168
Eco31I	GGTCTC	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	478
Eco53kI	GAGCTC	1 cut(s)	143
Eco57I	CTGAAG	1 cut(s)	327
EcoICRI	GAGCTC	1 cut(s)	143
EcoRI	GAATTC	1 cut(s)	541
EcoRII	CCWGG	1 cut(s)	381
EcoRV	GATATC	1 cut(s)	478
EcoT14I	CCWWGG	2 cut(s)	414, 724
EcoT38I	GRGCYC	2 cut(s)	145, 168
ErhI	CCWWGG	2 cut(s)	414, 724
FaeI	CATG	4 cut(s)	632, 685, 849, 870
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FatI	CATG	4 cut(s)	628, 681, 845, 866
FauNDI	CATATG	1 cut(s)	643
Fnu4HI	GCNGC	5 cut(s)	66, 69, 234, 534, 813
FokI	GGATG	1 cut(s)	243
FriOI	GRGCYC	2 cut(s)	145, 168
Fsp4HI	GCNGC	5 cut(s)	66, 69, 234, 534, 813
FspBI	CTAG	1 cut(s)	45
GluI	GCNGC	5 cut(s)	66, 69, 234, 534, 813
HaeIII	GGCC	2 cut(s)	217, 797
HapII	CCGG	5 cut(s)	83, 146, 196, 214, 260
Hin1I	GRCGYC	1 cut(s)	606
Hin1II	CATG	4 cut(s)	632, 685, 849, 870
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HindIII	AAGCTT	2 cut(s)	321, 357
HinfI	GANTC	6 cut(s)	79, 248, 311, 782, 871, 959
HpaII	CCGG	5 cut(s)	83, 146, 196, 214, 260
Hpy166II	GTNNAC	2 cut(s)	588, 947
Hpy188I	TCNGA	7 cut(s)	159, 192, 316, 439, 600, 837, 861
Hpy188III	TCNNGA	2 cut(s)	58, 260
Hpy8I	GTNNAC	2 cut(s)	588, 947
Hpy99I	CGWCG	4 cut(s)	76, 79, 122, 233
HpyAV	CCTTC	6 cut(s)	55, 271, 421, 503, 553, 688
HpyCH4IV	ACGT	3 cut(s)	11, 434, 606
HpyCH4V	TGCA	2 cut(s)	16, 370
HpyF10VI	GCNNNNNNNGC	6 cut(s)	177, 201, 210, 233, 464, 818
HpyF3I	CTNAG	5 cut(s)	191, 405, 483, 836, 858
HpySE526I	ACGT	3 cut(s)	11, 434, 606
Hsp92I	GRCGYC	1 cut(s)	606
Hsp92II	CATG	4 cut(s)	632, 685, 849, 870
Kpn2I	TCCGGA	1 cut(s)	259
KroI	GCCGGC	2 cut(s)	195, 213
KroNI	GCCGGC	2 cut(s)	197, 215
Kzo9I	GATC	5 cut(s)	109, 498, 595, 764, 863
LmnI	GCTCC	3 cut(s)	140, 148, 201
Lsp1109I	GCAGC	2 cut(s)	220, 824
LweI	GCATC	2 cut(s)	265, 357
MaeI	CTAG	1 cut(s)	45
MaeII	ACGT	3 cut(s)	11, 434, 606
MaeIII	GTNAC	3 cut(s)	7, 607, 685
MalI	GATC	5 cut(s)	111, 500, 597, 766, 865
MboI	GATC	5 cut(s)	109, 498, 595, 764, 863
MboII	GAAGA	2 cut(s)	320, 329
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	3 cut(s)	127, 145, 168
MluCI	AATT	5 cut(s)	219, 541, 564, 580, 828
MlyI	GAGTC	1 cut(s)	73
MnlI	CCTC	6 cut(s)	131, 247, 256, 262, 831, 896
MroI	TCCGGA	1 cut(s)	259
MroNI	GCCGGC	2 cut(s)	195, 213
MroXI	GAANNNNTTC	1 cut(s)	786
MseI	TTAA	2 cut(s)	32, 362
MspI	CCGG	5 cut(s)	83, 146, 196, 214, 260
MspR9I	CCNGG	1 cut(s)	383
MunI	CAATTG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	732
MvaI	CCWGG	1 cut(s)	383
MvnI	CGCG	2 cut(s)	129, 621
MwoI	GCNNNNNNNGC	6 cut(s)	177, 201, 210, 233, 464, 818
NaeI	GCCGGC	2 cut(s)	197, 215
NdeI	CATATG	1 cut(s)	643
NdeII	GATC	5 cut(s)	109, 498, 595, 764, 863
NgoMIV	GCCGGC	2 cut(s)	195, 213
NlaIII	CATG	4 cut(s)	632, 685, 849, 870
NlaIV	GGNNCC	1 cut(s)	212
NmeAIII	GCCGAG	2 cut(s)	79, 147
NmuCI	GTSAC	2 cut(s)	7, 607
NspI	RCATGY	1 cut(s)	849
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	732
PdiI	GCCGGC	2 cut(s)	197, 215
PdmI	GAANNNNTTC	1 cut(s)	786
PfeI	GAWTC	5 cut(s)	248, 311, 782, 871, 959
PkrI	GCNGC	5 cut(s)	67, 70, 235, 535, 814
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Psp124BI	GAGCTC	1 cut(s)	145
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	212
RsaI	GTAC	1 cut(s)	936
RsaNI	GTAC	1 cut(s)	935
SacI	GAGCTC	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	32, 362
SatI	GCNGC	5 cut(s)	66, 69, 234, 534, 813
Sau3AI	GATC	5 cut(s)	109, 498, 595, 764, 863
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	1 cut(s)	383
SduI	GDGCHC	3 cut(s)	127, 145, 168
SfaNI	GCATC	2 cut(s)	265, 357
SfcI	CTRYAG	2 cut(s)	816, 925
Sse9I	AATT	5 cut(s)	219, 541, 564, 580, 828
SsiI	CCGC	7 cut(s)	65, 68, 103, 129, 199, 534, 619
SspMI	CTAG	1 cut(s)	45
SstI	GAGCTC	1 cut(s)	145
StyD4I	CCNGG	1 cut(s)	381
StyI	CCWWGG	2 cut(s)	414, 724
TaiI	ACGT	3 cut(s)	14, 437, 609
TaqI	TCGA	3 cut(s)	108, 251, 962
TaqII	GACCGA	1 cut(s)	10
TasI	AATT	5 cut(s)	219, 541, 564, 580, 828
TatI	WGTACW	1 cut(s)	934
TauI	GCSGC	3 cut(s)	68, 71, 536
TfiI	GAWTC	5 cut(s)	248, 311, 782, 871, 959
Tru1I	TTAA	2 cut(s)	32, 362
Tru9I	TTAA	2 cut(s)	32, 362
TscAI	CASTG	5 cut(s)	487, 561, 703, 754, 904
TseFI	GTSAC	2 cut(s)	7, 607
TseI	GCWGC	2 cut(s)	233, 812
Tsp45I	GTSAC	2 cut(s)	7, 607
TspDTI	ATGAA	3 cut(s)	261, 617, 670
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	5 cut(s)	487, 561, 703, 754, 904
XapI	RAATTY	1 cut(s)	541
XceI	RCATGY	1 cut(s)	849
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	1 cut(s)	45
ZraI	GACGTC	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.