Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0009460

Physical Location & Seq

Genomic Coordinates Reverse (-)

8370656 .. 8374157

Gene Structure 3502 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG104600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAGCGTGACGTTGCAGGCGGTCTCTCTCTTAAACCCTAACCCTAGCTCTCGCTTCCAGAAGGCGGCGGCGGCGACGACGACTCCGGTAGCCTTGTGTTCTCGGCGGTTCGATCATTTCGTCGGTGCTCGCGGTTATGGAGGAGCTCCGGTTGCCGTTCCGAAGGGGCTCGGCTGTGGCGGCTCGCTGTCTCTGAGCCGGCGGAGCTTGTGGTGCCGGCCAATTGTAGCCGTCGCTGCCTCGCAAGATGAATCGAAGCATCCAGAGGTTGAGGTGGAGAAGGAAAAGGAAAGTGCCAAGTTGAAAGCTGAAGAATCAGAAGAAGCTTGGGAACAGACTTTGGCTTCTTTCAAAGAACAAGCTTTAAAGATGCAAAGTGTCTCACAGGAAGCGTATGAGATATATTCTAAGAAAGCCTTGGTTGTTTTGAAGGAAACGTCAGAGCAGTTGAAAATACAGGCTGATAAGGCAAGGTATGATATCACTGAGATAGCTAAAGAGATCAGCGTTGAAGGTAAAGAATATATCTCCACAGCCGCAAAGAATTCCCCTGAGCCAGTGAAGGAAATTGTTGAAACATTCAATTCATCAACAGACGATCTGAATGACGTCACAAAAATCCGCGACTTTCATGTTGGGATACCATATGGTCTGGTTCTTTCTCTTGGTGGCTTCCTTTCCTTCATGGTAACAGGAAGCACTGCTGGAATTAGGTTTGGGGTTATCCTTGGTGGCATTCTTTTGGCTTTCAGTGTTTCAAGTTTGAGATCATATAAGCAAGGAGAATCATTTCCTTTGGCCTTGAAAGGGCAGGCAGCTATAGCCAGTATAATTTTTCTGAGGGAGACATGCCTACTGGCTCAGGTTAGAATTTCGTTCTTATTTTCTAAAACTAGATTTCTTTATTATTGTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tmemb_14

Protein Analysis

305

Amino Acids

33.23

Weight (kDa)

8.47

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tmemb_14	PF03647	212 - 282	6.3e-11	Transmembrane proteins 14C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009460)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38550
fragaria_vesca	FvH4_6g09820 FvH4_6g09820 FvH4_6g09820 FvH4_6g09820
malus_domestica	MD04G1175000.v1.1 MD12G1188700.v1.1
prunus_persica	Prupe.6G294000_v2.0.a1 Prupe.6G294000_v2.0.a1
pyrus_communis	pycom04g15440
rosa_chinensis	RchiOBHm_Chr3g0460431
rosa_laevigata	RLG00000025012
rosa_multiflora	Rmu_sc0004267.1_g000011 Rmu_sc0021028.1_g000002
rosa_roxburghii	Rroxscaffold_6G00419490
rosa_rugosa	Rorug03G0042600 Rorug03G0042600
rosa_samantha	Rh3AG100600 Rh3BG104600 Rh3CG106400 Rh3DG105900
rosa_wichuraiana	Rw3G008560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	612
AccB1I	GGYRCC	1 cut(s)	213
AccII	CGCG	2 cut(s)	132, 624
AcoI	YGGCCR	1 cut(s)	218
AcsI	RAATTY	2 cut(s)	544, 870
AcuI	CTGAAG	1 cut(s)	330
AcyI	GRCGYC	1 cut(s)	609
AfiI	CCNNNNNNNGG	2 cut(s)	64, 807
AgsI	TTSAA	9 cut(s)	304, 352, 430, 451, 512, 575, 583, 759, 805
AluBI	AGCT	8 cut(s)	48, 146, 207, 308, 326, 362, 494, 818
AluI	AGCT	8 cut(s)	48, 146, 207, 308, 326, 362, 494, 818
Alw21I	GWGCWC	2 cut(s)	130, 148
Alw26I	GTCTC	4 cut(s)	28, 195, 385, 839
AoxI	GGCC	2 cut(s)	218, 798
ApeKI	GCWGC	2 cut(s)	236, 815
ApoI	RAATTY	2 cut(s)	544, 870
Asp700I	GAANNNNTTC	1 cut(s)	789
BanI	GGYRCC	1 cut(s)	213
BanII	GRGCYC	2 cut(s)	148, 171
Bbv12I	GWGCWC	2 cut(s)	130, 148
BbvI	GCAGC	2 cut(s)	223, 827
BceAI	ACGGC	2 cut(s)	140, 215
BciVI	GTATCC	1 cut(s)	633
BcoDI	GTCTC	4 cut(s)	28, 195, 385, 839
BfaI	CTAG	2 cut(s)	45, 894
BfmI	CTRYAG	1 cut(s)	819
BfuI	GTATCC	1 cut(s)	633
BisI	GCNGC	7 cut(s)	66, 69, 72, 181, 237, 537, 816
BlsI	GCNGC	7 cut(s)	67, 70, 73, 182, 238, 538, 817
BmiI	GGNNCC	1 cut(s)	215
BmsI	GCATC	2 cut(s)	268, 360
Bpu10I	CCTNAGC	2 cut(s)	552, 861
BsaHI	GRCGYC	1 cut(s)	609
BsaI	GGTCTC	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	417, 727
BsaWI	WCCGGW	2 cut(s)	85, 148
BsaXI	ACNNNNNCTCC	4 cut(s)	67, 97, 135, 165
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 807
Bse118I	RCCGGY	2 cut(s)	198, 216
Bse1I	ACTGG	3 cut(s)	557, 825, 861
BseDI	CCNNGG	2 cut(s)	417, 727
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	64, 807
BseMII	CTCAG	5 cut(s)	185, 477, 543, 830, 875
BseNI	ACTGG	3 cut(s)	557, 825, 861
BseRI	GAGGAG	1 cut(s)	156
BseXI	GCAGC	2 cut(s)	223, 827
Bsh1236I	CGCG	2 cut(s)	132, 624
BshFI	GGCC	2 cut(s)	220, 800
BshNI	GGYRCC	1 cut(s)	213
BsiHKAI	GWGCWC	2 cut(s)	130, 148
BsiSI	CCGG	4 cut(s)	86, 149, 199, 217
BslI	CCNNNNNNNGG	2 cut(s)	64, 807
BsmAI	GTCTC	4 cut(s)	28, 195, 385, 839
BsmI	GAATGC	1 cut(s)	735
BsnI	GGCC	2 cut(s)	220, 800
Bso31I	GGTCTC	1 cut(s)	28
Bsp1286I	GDGCHC	3 cut(s)	130, 148, 171
Bsp143I	GATC	4 cut(s)	112, 501, 598, 767
BspANI	GGCC	2 cut(s)	220, 800
BspCNI	CTCAG	5 cut(s)	186, 478, 544, 831, 874
BspFNI	CGCG	2 cut(s)	132, 624
BspLI	GGNNCC	1 cut(s)	215
BspT107I	GGYRCC	1 cut(s)	213
BspTNI	GGTCTC	1 cut(s)	28
BsrFI	RCCGGY	2 cut(s)	198, 216
BsrI	ACTGG	3 cut(s)	557, 825, 861
BssAI	RCCGGY	2 cut(s)	198, 216
BssECI	CCNNGG	2 cut(s)	417, 727
BssMI	GATC	4 cut(s)	112, 501, 598, 767
BssNI	GRCGYC	1 cut(s)	609
BssT1I	CCWWGG	2 cut(s)	417, 727
BstACI	GRCGYC	1 cut(s)	609
BstC8I	GCNNGC	6 cut(s)	18, 130, 185, 200, 218, 813
BstDEI	CTNAG	6 cut(s)	194, 408, 486, 552, 839, 861
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	2 cut(s)	132, 624
BstKTI	GATC	4 cut(s)	115, 504, 601, 770
BstMAI	GTCTC	4 cut(s)	28, 195, 385, 839
BstMBI	GATC	4 cut(s)	112, 501, 598, 767
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 152, 180, 204, 213, 236, 467, 821
BstNSI	RCATGY	1 cut(s)	852
BstSFI	CTRYAG	1 cut(s)	819
BstUI	CGCG	2 cut(s)	132, 624
BstV1I	GCAGC	2 cut(s)	223, 827
BsuI	GTATCC	1 cut(s)	633
BsuRI	GGCC	2 cut(s)	220, 800
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	699
BtsIMutI	CAGTG	4 cut(s)	483, 564, 699, 757
Cac8I	GCNNGC	6 cut(s)	18, 130, 185, 200, 218, 813
Cfr10I	RCCGGY	2 cut(s)	198, 216
CviAII	CATG	3 cut(s)	632, 685, 849
DdeI	CTNAG	6 cut(s)	194, 408, 486, 552, 839, 861
DpnI	GATC	4 cut(s)	114, 503, 600, 769
DpnII	GATC	4 cut(s)	112, 501, 598, 767
DraI	TTTAAA	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	218
EciI	GGCGGA	1 cut(s)	217
Ecl136II	GAGCTC	1 cut(s)	146
Eco130I	CCWWGG	2 cut(s)	417, 727
Eco24I	GRGCYC	2 cut(s)	148, 171
Eco31I	GGTCTC	1 cut(s)	28
Eco32I	GATATC	1 cut(s)	481
Eco53kI	GAGCTC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	146
EcoRI	GAATTC	1 cut(s)	544
EcoRV	GATATC	1 cut(s)	481
EcoT14I	CCWWGG	2 cut(s)	417, 727
EcoT38I	GRGCYC	2 cut(s)	148, 171
ErhI	CCWWGG	2 cut(s)	417, 727
FaeI	CATG	3 cut(s)	635, 688, 852
FalI	AAGNNNNNCTT	2 cut(s)	401, 433
FatI	CATG	3 cut(s)	631, 684, 848
FauNDI	CATATG	1 cut(s)	646
Fnu4HI	GCNGC	7 cut(s)	66, 69, 72, 181, 237, 537, 816
FokI	GGATG	1 cut(s)	246
FriOI	GRGCYC	2 cut(s)	148, 171
Fsp4HI	GCNGC	7 cut(s)	66, 69, 72, 181, 237, 537, 816
FspBI	CTAG	2 cut(s)	45, 894
GluI	GCNGC	7 cut(s)	66, 69, 72, 181, 237, 537, 816
HaeIII	GGCC	2 cut(s)	220, 800
HapII	CCGG	4 cut(s)	86, 149, 199, 217
Hin1I	GRCGYC	1 cut(s)	609
Hin1II	CATG	3 cut(s)	635, 688, 852
HindIII	AAGCTT	2 cut(s)	324, 360
HinfI	GANTC	4 cut(s)	82, 251, 314, 785
HpaII	CCGG	4 cut(s)	86, 149, 199, 217
Hpy188I	TCNGA	6 cut(s)	162, 195, 319, 442, 603, 840
Hpy188III	TCNNGA	2 cut(s)	58, 263
Hpy99I	CGWCG	4 cut(s)	79, 82, 125, 236
HpyAV	CCTTC	7 cut(s)	55, 157, 274, 424, 506, 556, 691
HpyCH4IV	ACGT	3 cut(s)	11, 437, 609
HpyCH4V	TGCA	2 cut(s)	16, 373
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 152, 180, 204, 213, 236, 467, 821
HpyF3I	CTNAG	6 cut(s)	194, 408, 486, 552, 839, 861
HpySE526I	ACGT	3 cut(s)	11, 437, 609
Hsp92I	GRCGYC	1 cut(s)	609
Hsp92II	CATG	3 cut(s)	635, 688, 852
KroI	GCCGGC	2 cut(s)	198, 216
KroNI	GCCGGC	2 cut(s)	200, 218
Kzo9I	GATC	4 cut(s)	112, 501, 598, 767
LmnI	GCTCC	3 cut(s)	143, 151, 204
Lsp1109I	GCAGC	2 cut(s)	223, 827
LweI	GCATC	2 cut(s)	268, 360
MaeI	CTAG	2 cut(s)	45, 894
MaeII	ACGT	3 cut(s)	11, 437, 609
MaeIII	GTNAC	3 cut(s)	7, 610, 688
MalI	GATC	4 cut(s)	114, 503, 600, 769
MboI	GATC	4 cut(s)	112, 501, 598, 767
MboII	GAAGA	2 cut(s)	323, 332
MfeI	CAATTG	1 cut(s)	222
MhlI	GDGCHC	3 cut(s)	130, 148, 171
MluCI	AATT	7 cut(s)	222, 544, 567, 583, 708, 831, 870
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	5 cut(s)	134, 250, 259, 265, 834
MroNI	GCCGGC	2 cut(s)	198, 216
MroXI	GAANNNNTTC	1 cut(s)	789
MseI	TTAA	2 cut(s)	32, 365
MspI	CCGG	4 cut(s)	86, 149, 199, 217
MunI	CAATTG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	735
MvnI	CGCG	2 cut(s)	132, 624
MwoI	GCNNNNNNNGC	8 cut(s)	71, 152, 180, 204, 213, 236, 467, 821
NaeI	GCCGGC	2 cut(s)	200, 218
NdeI	CATATG	1 cut(s)	646
NdeII	GATC	4 cut(s)	112, 501, 598, 767
NgoMIV	GCCGGC	2 cut(s)	198, 216
NlaIII	CATG	3 cut(s)	635, 688, 852
NlaIV	GGNNCC	1 cut(s)	215
NmeAIII	GCCGAG	2 cut(s)	82, 150
NmuCI	GTSAC	2 cut(s)	7, 610
NspI	RCATGY	1 cut(s)	852
PcsI	WCGNNNNNNNCGW	1 cut(s)	117
PctI	GAATGC	1 cut(s)	735
PdiI	GCCGGC	2 cut(s)	200, 218
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	3 cut(s)	251, 314, 785
PkrI	GCNGC	7 cut(s)	67, 70, 73, 182, 238, 538, 817
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp124BI	GAGCTC	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	32, 365
SatI	GCNGC	7 cut(s)	66, 69, 72, 181, 237, 537, 816
Sau3AI	GATC	4 cut(s)	112, 501, 598, 767
SchI	GAGTC	1 cut(s)	76
SduI	GDGCHC	3 cut(s)	130, 148, 171
SfaNI	GCATC	2 cut(s)	268, 360
SfcI	CTRYAG	1 cut(s)	819
Sse9I	AATT	7 cut(s)	222, 544, 567, 583, 708, 831, 870
SspMI	CTAG	2 cut(s)	45, 894
SstI	GAGCTC	1 cut(s)	148
StyI	CCWWGG	2 cut(s)	417, 727
TaiI	ACGT	3 cut(s)	14, 440, 612
TaqI	TCGA	2 cut(s)	111, 254
TasI	AATT	7 cut(s)	222, 544, 567, 583, 708, 831, 870
TauI	GCSGC	5 cut(s)	68, 71, 74, 183, 539
TfiI	GAWTC	3 cut(s)	251, 314, 785
Tru1I	TTAA	2 cut(s)	32, 365
Tru9I	TTAA	2 cut(s)	32, 365
TscAI	CASTG	4 cut(s)	490, 564, 706, 757
TseFI	GTSAC	2 cut(s)	7, 610
TseI	GCWGC	2 cut(s)	236, 815
Tsp45I	GTSAC	2 cut(s)	7, 610
TspDTI	ATGAA	4 cut(s)	264, 576, 620, 673
TspRI	CASTG	4 cut(s)	490, 564, 706, 757
XapI	RAATTY	2 cut(s)	544, 870
XceI	RCATGY	1 cut(s)	852
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	2 cut(s)	45, 894
ZraI	GACGTC	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.