FvH4_6g14211

UNC93-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006088
Physical Location & Seq
Reverse (-)
8725174 .. 8728289
3116 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g14211.t1

Sequence Viewer

Length: 1323 bp
ATGGCTCCCCCTCGCGACGAAGAGACCCCTCTCGTCGCCGCCGCCGCCGAAGACGACTCGCCGGCCGAGAAGGGGAGGAGTCACACCAGAGATGTCCATATTCTCAGCTCCGCGTTTCTGCTGGTCTTCCTCGCTTACGGTGCAGCTCAGAATCTGGAGAGCACTGTCAATAACGTGGGGGATTTGGGAACGACGTCGCTTGGGATATTGTATTTGTCGTTCACGTTTTTCTCTCTGGTGGCGTCTCCGGTGGTTAGGAAGCTGGGACCAAAGAATGCTTTGATTCTTGGGACGAGTGGATATTGGTTGTTTATTGCTGCTAATTTGAAGCCTACTTGGTATACTATGGTTCCAGCTGCATTGTACATGGGTTTTGCTGCTTCCATAATATGGGTTGGGCAGGGGACATATTTGACTTCTACTGCGCGTAGTCATGCCAAAGATAACAGTTTACATGAAGGAACTGTTATTGGCCAGTTCAATGGAGAATTTTGGGGGATGTTTGCTTGTCACCAGTTTGTGGGAAATCTTATATCTCTCGCCTTGCTAAGTGATGGAACAGGGGGGAGTACTAATGGCACAACCTTATTATTCAGTGTGTTTCTTGTCAGTATGACCTTAGGTACCATACTGATGTGCTTCTTGAATAAAAGGGGTATTAAAGAAGAGGAGGACTCCCAAGGTCCTTCTCTCACCTTTTATGCTTCTGTGGTATCTTTGTCGAAGACAGTCATTAGACCTTTGTATGATGTGAGGATGCTATTGATCATCCCCCTTATGGCGTATTCAGGATTGCAACAAGCATTTGTATGGGCTGATTATACTGCGTATATTGTTAGTCCAACACTTGGTGTGTCTGGTGTTGGTGGTGCTATGGCAGTTTATGGGGCATGTGATGCAATATGTTCACTGGCTGCTGGTCGATTTACATCTGGTCTCAAGTCCATCACTATTATAGTTTCTGCTGGAGTTTTGATCCAAACCATTATATTCCTCTGGCTTCTTCTAATATACAGTCCAGTGAGCGGGGTACTTGGCACTGTATACCCTCTTATAATGGCAGCTGCCTTGGGCATTGGTGATGGAGTCTTAAATACACAGCTCAGTGCTTTGCTTGCGATATACTTCAAGCATGATACTGAAGGAGCATTTGCACAGCTCAAGGTCTGGCAGAGTGGTACAATTGCAGCTGTATTCTTTTGTAGTGCTTACATCTCATTACAGGCAATGCTGGTGGTTATGCTTGTTACAATCTCCATTGCATATGGTGGCTTTATTTTTCTCTCTCTTCGAGAGAAAGCCCTCTCCCATTCAAGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UNC-93

Protein Analysis

441

Amino Acids

46.86

Weight (kDa)

6.16

Isoelectric Point (pI)

31.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UNC-93 PF05978 63 - 421 1.2e-35 Ion channel regulatory protein UNC-93
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1055
AatII GACGTC 1 cut(s) 197
Acc65I GGTACC 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 623
AccB7I CCANNNNNTGG 3 cut(s) 390, 520, 848
AccBSI CCGCTC 1 cut(s) 1026
AccI GTMKAC 2 cut(s) 341, 1044
AccII CGCG 3 cut(s) 15, 113, 427
AciI CCGC 5 cut(s) 39, 42, 45, 111, 1026
AclWI GGATC 1 cut(s) 970
AcoI YGGCCR 2 cut(s) 63, 472
AcsI RAATTY 1 cut(s) 488
AcuI CTGAAG 1 cut(s) 1161
AcyI GRCGYC 2 cut(s) 194, 242
AdeI CACNNNGTG 1 cut(s) 851
AfaI GTAC 5 cut(s) 365, 571, 625, 1032, 1180
AfiI CCNNNNNNNGG 6 cut(s) 72, 390, 520, 778, 848, 1025
AgsI TTSAA 5 cut(s) 328, 481, 646, 1129, 1314
AluBI AGCT 8 cut(s) 108, 146, 262, 356, 1064, 1102, 1159, 1190
AluI AGCT 8 cut(s) 108, 146, 262, 356, 1064, 1102, 1159, 1190
Alw21I GWGCWC 1 cut(s) 164
Alw26I GTCTC 3 cut(s) 17, 249, 941
AlwI GGATC 1 cut(s) 970
AlwNI CAGNNNCTG 1 cut(s) 154
AoxI GGCC 2 cut(s) 63, 472
ApeKI GCWGC 8 cut(s) 143, 317, 356, 377, 914, 1061, 1064, 1187
ApoI RAATTY 1 cut(s) 488
Asp718I GGTACC 1 cut(s) 623
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 2 cut(s) 266, 683
AsuHPI GGTGA 3 cut(s) 503, 685, 1091
AvaII GGWCC 2 cut(s) 266, 683
AxyI CCTNAGG 1 cut(s) 619
BalI TGGCCA 1 cut(s) 474
BanI GGYRCC 1 cut(s) 623
BbsI GAAGAC 3 cut(s) 57, 118, 731
Bbv12I GWGCWC 1 cut(s) 164
BbvI GCAGC 8 cut(s) 155, 304, 343, 364, 901, 1051, 1073, 1199
BccI CCATC 3 cut(s) 548, 953, 1076
BclI TGATCA 1 cut(s) 765
BcoDI GTCTC 3 cut(s) 17, 249, 941
BmcAI AGTACT 1 cut(s) 571
Bme18I GGWCC 2 cut(s) 266, 683
BmgT120I GGNCC 2 cut(s) 266, 683
BmiI GGNNCC 4 cut(s) 6, 267, 351, 625
BmsI GCATC 2 cut(s) 747, 886
BpiI GAAGAC 3 cut(s) 57, 118, 731
BplI GAGNNNNNCTC 2 cut(s) 659, 691
BpmI CTGGAG 2 cut(s) 176, 987
BpuEI CTTGAG 2 cut(s) 923, 1145
BsaBI GATNNNNATC 1 cut(s) 928
BsaHI GRCGYC 2 cut(s) 194, 242
BsaI GGTCTC 2 cut(s) 17, 941
BsaJI CCNNGG 2 cut(s) 679, 1068
BsaWI WCCGGW 1 cut(s) 247
Bsc4I CCNNNNNNNGG 6 cut(s) 72, 390, 520, 778, 848, 1025
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 4 cut(s) 475, 514, 915, 1019
Bse21I CCTNAGG 1 cut(s) 619
Bse3DI GCAATG 2 cut(s) 1233, 1257
Bse8I GATNNNNATC 1 cut(s) 928
BseDI CCNNGG 2 cut(s) 679, 1068
BseGI GGATG 3 cut(s) 504, 762, 768
BseJI GATNNNNATC 1 cut(s) 928
BseLI CCNNNNNNNGG 6 cut(s) 72, 390, 520, 778, 848, 1025
BseMI GCAATG 2 cut(s) 1233, 1257
BseMII CTCAG 3 cut(s) 118, 161, 1117
BseNI ACTGG 4 cut(s) 475, 514, 915, 1019
BseRI GAGGAG 2 cut(s) 91, 683
BseX3I CGGCCG 1 cut(s) 63
BseXI GCAGC 8 cut(s) 155, 304, 343, 364, 901, 1051, 1073, 1199
BseYI CCCAGC 1 cut(s) 262
BsgI GTGCAG 1 cut(s) 162
Bsh1236I CGCG 3 cut(s) 15, 113, 427
Bsh1285I CGRYCG 1 cut(s) 66
BshFI GGCC 2 cut(s) 65, 474
BshNI GGYRCC 1 cut(s) 623
BsiEI CGRYCG 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 164
BsiSI CCGG 2 cut(s) 62, 248
BslFI GGGAC 3 cut(s) 279, 304, 418
BslI CCNNNNNNNGG 6 cut(s) 72, 390, 520, 778, 848, 1025
BsmAI GTCTC 3 cut(s) 17, 249, 941
BsmBI CGTCTC 1 cut(s) 249
BsmFI GGGAC 3 cut(s) 279, 304, 418
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 2 cut(s) 65, 474
Bso31I GGTCTC 2 cut(s) 17, 941
Bsp1286I GDGCHC 1 cut(s) 164
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 2 cut(s) 765, 975
Bsp68I TCGCGA 1 cut(s) 15
BspACI CCGC 5 cut(s) 39, 42, 45, 111, 1026
BspANI GGCC 2 cut(s) 65, 474
BspCNI CTCAG 3 cut(s) 117, 160, 1116
BspFNI CGCG 3 cut(s) 15, 113, 427
BspLI GGNNCC 4 cut(s) 6, 267, 351, 625
BspPI GGATC 1 cut(s) 970
BspT107I GGYRCC 1 cut(s) 623
BspTNI GGTCTC 2 cut(s) 17, 941
BsrBI CCGCTC 1 cut(s) 1026
BsrDI GCAATG 2 cut(s) 1233, 1257
BsrFI RCCGGY 1 cut(s) 61
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 4 cut(s) 475, 514, 915, 1019
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 679, 1068
BssMI GATC 2 cut(s) 765, 975
BssNAI GTATAC 2 cut(s) 342, 1045
BssNI GRCGYC 2 cut(s) 194, 242
BssT1I CCWWGG 2 cut(s) 679, 1068
Bst1107I GTATAC 2 cut(s) 342, 1045
Bst4CI ACNGT 7 cut(s) 140, 166, 449, 466, 730, 1016, 1042
Bst6I CTCTTC 3 cut(s) 15, 660, 1293
BstACI GRCGYC 2 cut(s) 194, 242
BstAPI GCANNNNNTGC 1 cut(s) 896
BstAUI TGTACA 1 cut(s) 363
BstC8I GCNNGC 2 cut(s) 63, 1116
BstDEI CTNAG 5 cut(s) 104, 147, 548, 619, 1103
BstF5I GGATG 3 cut(s) 504, 762, 768
BstFNI CGCG 3 cut(s) 15, 113, 427
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 2 cut(s) 768, 978
BstMAI GTCTC 3 cut(s) 17, 249, 941
BstMBI GATC 2 cut(s) 765, 975
BstMCI CGRYCG 1 cut(s) 66
BstMWI GCNNNNNNNGC 4 cut(s) 44, 140, 896, 1115
BstNSI RCATGY 1 cut(s) 894
BstUI CGCG 3 cut(s) 15, 113, 427
BstV1I GCAGC 8 cut(s) 155, 304, 343, 364, 901, 1051, 1073, 1199
BstV2I GAAGAC 3 cut(s) 57, 118, 731
BstXI CCANNNNNNTGG 1 cut(s) 482
BstZ17I GTATAC 2 cut(s) 342, 1045
BstZI CGGCCG 1 cut(s) 63
Bsu36I CCTNAGG 1 cut(s) 619
BsuRI GGCC 2 cut(s) 65, 474
BtsCI GGATG 3 cut(s) 504, 762, 768
BtsIMutI CAGTG 6 cut(s) 162, 601, 908, 1026, 1038, 1111
BtuMI TCGCGA 1 cut(s) 15
Cac8I GCNNGC 2 cut(s) 63, 1116
CaiI CAGNNNCTG 1 cut(s) 154
CfoI GCGC 1 cut(s) 427
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 266, 683
CseI GACGC 1 cut(s) 231
Csp6I GTAC 5 cut(s) 364, 570, 624, 1031, 1179
CspCI CAANNNNNGTGG 2 cut(s) 1215, 1250
CviAII CATG 5 cut(s) 367, 434, 455, 891, 1133
CviQI GTAC 5 cut(s) 364, 570, 624, 1031, 1179
DdeI CTNAG 5 cut(s) 104, 147, 548, 619, 1103
DpnI GATC 2 cut(s) 767, 977
DpnII GATC 2 cut(s) 765, 975
DraIII CACNNNGTG 1 cut(s) 851
EaeI YGGCCR 2 cut(s) 63, 472
EagI CGGCCG 1 cut(s) 63
Eam1104I CTCTTC 3 cut(s) 15, 660, 1293
EarI CTCTTC 3 cut(s) 15, 660, 1293
EclXI CGGCCG 1 cut(s) 63
Eco130I CCWWGG 2 cut(s) 679, 1068
Eco31I GGTCTC 2 cut(s) 17, 941
Eco47I GGWCC 2 cut(s) 266, 683
Eco52I CGGCCG 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 1161
Eco81I CCTNAGG 1 cut(s) 619
EcoO109I RGGNCCY 1 cut(s) 683
EcoT14I CCWWGG 2 cut(s) 679, 1068
ErhI CCWWGG 2 cut(s) 679, 1068
Esp3I CGTCTC 1 cut(s) 249
FaeI CATG 5 cut(s) 370, 437, 458, 894, 1136
FaqI GGGAC 3 cut(s) 279, 304, 418
FatI CATG 5 cut(s) 366, 433, 454, 890, 1132
FauI CCCGC 1 cut(s) 1019
FauNDI CATATG 1 cut(s) 1264
FbaI TGATCA 1 cut(s) 765
FblI GTMKAC 2 cut(s) 341, 1044
FokI GGATG 3 cut(s) 511, 755, 769
GlaI GCGC 1 cut(s) 426
GsaI CCCAGC 1 cut(s) 266
GsuI CTGGAG 2 cut(s) 176, 987
HaeIII GGCC 2 cut(s) 65, 474
HapII CCGG 2 cut(s) 62, 248
HgaI GACGC 1 cut(s) 231
HhaI GCGC 1 cut(s) 427
Hin1I GRCGYC 2 cut(s) 194, 242
Hin1II CATG 5 cut(s) 370, 437, 458, 894, 1136
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HinfI GANTC 6 cut(s) 56, 79, 151, 283, 674, 1086
HpaII CCGG 2 cut(s) 62, 248
HphI GGTGA 3 cut(s) 503, 685, 1091
Hpy166II GTNNAC 5 cut(s) 222, 342, 452, 908, 1045
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 5 cut(s) 14, 155, 643, 789, 1292
Hpy8I GTNNAC 5 cut(s) 222, 342, 452, 908, 1045
Hpy99I CGWCG 4 cut(s) 20, 38, 196, 199
HpyAV CCTTC 4 cut(s) 64, 452, 696, 1136
HpyCH4III ACNGT 7 cut(s) 140, 166, 449, 466, 730, 1016, 1042
HpyCH4IV ACGT 3 cut(s) 174, 194, 224
HpyCH4V TGCA 7 cut(s) 143, 359, 796, 899, 1154, 1187, 1262
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 140, 896, 1115
HpyF3I CTNAG 5 cut(s) 104, 147, 548, 619, 1103
HpySE526I ACGT 3 cut(s) 174, 194, 224
Hsp92I GRCGYC 2 cut(s) 194, 242
Hsp92II CATG 5 cut(s) 370, 437, 458, 894, 1136
HspAI GCGC 1 cut(s) 425
KpnI GGTACC 1 cut(s) 627
KroI GCCGGC 1 cut(s) 61
KroNI GCCGGC 1 cut(s) 63
Ksp22I TGATCA 1 cut(s) 765
Kzo9I GATC 2 cut(s) 765, 975
LmnI GCTCC 3 cut(s) 10, 113, 1145
Lsp1109I GCAGC 8 cut(s) 155, 304, 343, 364, 901, 1051, 1073, 1199
LweI GCATC 2 cut(s) 747, 886
MaeII ACGT 3 cut(s) 174, 194, 224
MaeIII GTNAC 3 cut(s) 80, 509, 1246
MalI GATC 2 cut(s) 767, 977
MbiI CCGCTC 1 cut(s) 1026
MboI GATC 2 cut(s) 765, 975
MboII GAAGA 7 cut(s) 32, 62, 118, 677, 736, 995, 1280
MfeI CAATTG 1 cut(s) 1182
MhlI GDGCHC 1 cut(s) 164
MlsI TGGCCA 1 cut(s) 474
MluCI AATT 3 cut(s) 322, 488, 1182
MluNI TGGCCA 1 cut(s) 474
MlyI GAGTC 4 cut(s) 50, 88, 668, 1095
MmeI TCCRAC 1 cut(s) 866
Mox20I TGGCCA 1 cut(s) 474
MroNI GCCGGC 1 cut(s) 61
MscI TGGCCA 1 cut(s) 474
MseI TTAA 2 cut(s) 660, 1091
MslI CAYNNNNRTG 2 cut(s) 632, 808
Msp20I TGGCCA 1 cut(s) 474
MspA1I CMGCKG 3 cut(s) 356, 1064, 1190
MspI CCGG 2 cut(s) 62, 248
MunI CAATTG 1 cut(s) 1182
Mva1269I GAATGC 1 cut(s) 280
MvnI CGCG 3 cut(s) 15, 113, 427
MwoI GCNNNNNNNGC 4 cut(s) 44, 140, 896, 1115
NaeI GCCGGC 1 cut(s) 63
NdeI CATATG 1 cut(s) 1264
NdeII GATC 2 cut(s) 765, 975
NgoMIV GCCGGC 1 cut(s) 61
NlaIII CATG 5 cut(s) 370, 437, 458, 894, 1136
NlaIV GGNNCC 4 cut(s) 6, 267, 351, 625
NmeAIII GCCGAG 1 cut(s) 91
NmuCI GTSAC 2 cut(s) 80, 509
NruI TCGCGA 1 cut(s) 15
NspI RCATGY 1 cut(s) 894
PctI GAATGC 1 cut(s) 280
PdiI GCCGGC 1 cut(s) 63
PfeI GAWTC 2 cut(s) 151, 283
PflMI CCANNNNNTGG 3 cut(s) 390, 520, 848
PleI GAGTC 4 cut(s) 50, 87, 668, 1094
PpsI GAGTC 4 cut(s) 50, 87, 668, 1094
PpuMI RGGWCCY 1 cut(s) 683
PsiI TTATAA 1 cut(s) 1055
Psp5II RGGWCCY 1 cut(s) 683
PspFI CCCAGC 1 cut(s) 262
PspN4I GGNNCC 4 cut(s) 6, 267, 351, 625
PspPI GGNCC 2 cut(s) 266, 683
PspPPI RGGWCCY 1 cut(s) 683
PsrI GAACNNNNNNTAC 2 cut(s) 203, 235
PstNI CAGNNNCTG 1 cut(s) 154
PvuII CAGCTG 3 cut(s) 356, 1064, 1190
RruI TCGCGA 1 cut(s) 15
RsaI GTAC 5 cut(s) 365, 571, 625, 1032, 1180
RsaNI GTAC 5 cut(s) 364, 570, 624, 1031, 1179
RseI CAYNNNNRTG 2 cut(s) 632, 808
SaqAI TTAA 2 cut(s) 660, 1091
Sau3AI GATC 2 cut(s) 765, 975
Sau96I GGNCC 2 cut(s) 266, 683
ScaI AGTACT 1 cut(s) 571
SchI GAGTC 4 cut(s) 50, 88, 668, 1095
SduI GDGCHC 1 cut(s) 164
SfaNI GCATC 2 cut(s) 747, 886
SinI GGWCC 2 cut(s) 266, 683
SmiMI CAYNNNNRTG 2 cut(s) 632, 808
SmlI CTYRAG 2 cut(s) 938, 1160
SmoI CTYRAG 2 cut(s) 938, 1160
Sse9I AATT 3 cut(s) 322, 488, 1182
SsiI CCGC 5 cut(s) 39, 42, 45, 111, 1026
StyI CCWWGG 2 cut(s) 679, 1068
TaaI ACNGT 7 cut(s) 140, 166, 449, 466, 730, 1016, 1042
TaiI ACGT 3 cut(s) 177, 197, 227
TaqI TCGA 3 cut(s) 722, 922, 1291
TasI AATT 3 cut(s) 322, 488, 1182
TatI WGTACW 2 cut(s) 363, 569
TauI GCSGC 3 cut(s) 41, 44, 47
TfiI GAWTC 2 cut(s) 151, 283
Tru1I TTAA 2 cut(s) 660, 1091
Tru9I TTAA 2 cut(s) 660, 1091
TscAI CASTG 6 cut(s) 169, 601, 915, 1026, 1045, 1111
TseFI GTSAC 2 cut(s) 80, 509
TseI GCWGC 8 cut(s) 143, 317, 356, 377, 914, 1061, 1064, 1187
Tsp45I GTSAC 2 cut(s) 80, 509
TspDTI ATGAA 2 cut(s) 471, 1308
TspRI CASTG 6 cut(s) 169, 601, 915, 1026, 1045, 1111
Van91I CCANNNNNTGG 3 cut(s) 390, 520, 848
VpaK11BI GGWCC 2 cut(s) 266, 683
XapI RAATTY 1 cut(s) 488
XceI RCATGY 1 cut(s) 894
XmiI GTMKAC 2 cut(s) 341, 1044
ZraI GACGTC 1 cut(s) 195
ZrmI AGTACT 1 cut(s) 571
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.