Rw3G012670

UNC93-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006088
Physical Location & Seq
Reverse (-)
12487706 .. 12490450
2745 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G012670.1

Sequence Viewer

Length: 1320 bp
ATGGAGTCTCTGGATTCTCATAATGATATAGAGAAGCCACTGCTCCCCAGCGATGACTCGTTGGTGCTAACCCAGAAGAGGACTCATGCCAGAGATGTGCATATTCTGAGTTTTTCTTTCTTGCTGATATTTCTGGCTTTTGGCGCCGCCCAGAATCTGGAGAGCTCTGTCAACACTGACAAGGGTTTGGGGACAACGTCGCTTGGGATTGTGTACTTGTCTTTTGCACTCTTCTCTTTGGTGGCGTCTCCGGTGGTTCGAGCTCTTGGATCAAAGACTGCTTTGATGCTTGGGACTACTGGCTACTGGTTGTTTATAGCTGTACATTTGATCAAACATACTTGGTACATTATGTATCCAATTTCTTTATACCTCGGATTTGCCTCTTCAATAATATGGGTTGAGCAGGGGACATATCTAACTTCTGCTGCGCGTAGTCATGCAAGAGATAATAACTTACATGAAGGAACAACTATTGGCAACTTCAATGGAGAATTCTGGGGAATGTTTGCTTGTCGTCAGTTTGTCGGAAATCTCTTGTCACTTGCCATCCTAAGAGATGGAAGCGAGGGAACTCCTGGTCAAACAAAGTTCTTGTACGCCGTGTTTCTCTGCAGTATGACCTTAGGGATCATACTGATGTGCTTCTTAAACAACAGGGATTATGTAGAAAAGGATTATCAGGATTCTTCTCGCAACTTCTATGCTTCTCTGATATCTTTTTTGAAGGCTGTTATCACTCCTTTGTTCGATGTACGAATGCTATTGATCATCCCCCTTATGGCGTATACAGGGTTACAACAAGCATTTGTATGGGCTGAATTCACCAAGTATGTTGTTACTCCAACGCTCGGTATGTCTGGTGTGGGTGGTGCAATGGCAGTTTATGGCTTTTTTGATGCAATATGCTCACTCGTTGCTGGTCGACTCACATCTGGTCTCAAGTCCATCAGTCTTATAGTTTCCGGTGGAGCTCTCCTTCAGGCTATTGTATTCGTCTGGCTTCTTCTAAATTTCAGCCGATCAAGCGGAGTAATTAGCATTGTAATAATGGCAGCTTTATTGGGTATTGGTGATGGAGTCTTTAACACACAGATCAGTGCTTTGCTAGGGATATTCTTCAAGCGCGATACTGAAGGAGCCTTTGCACAGCTCAAGGTGTGGCAGAGCGGTGCTGTTGCAGTCATCTTCTTTGTTAGTCCGTACATATCATTAGAGGCAATGCTGGTGGTTATGCTAACTGGAGTTTGTATCGCATATGGCACCTTTGTCTACCTATTTCTTCAAGGAGAGGAAGCAGTGTCATCTTCAAGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UNC-93

Protein Analysis

439

Amino Acids

47.94

Weight (kDa)

6.38

Isoelectric Point (pI)

28.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 38 - 377 1.6e-07 Major Facilitator Superfamily
UNC-93 PF05978 63 - 420 2.3e-40 Ion channel regulatory protein UNC-93
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 143, 1262
AccB7I CCANNNNNTGG 1 cut(s) 157
AccBSI CCGCTC 1 cut(s) 1170
AccI GTMKAC 3 cut(s) 788, 925, 1272
AccII CGCG 2 cut(s) 433, 1128
AciI CCGC 3 cut(s) 147, 1029, 1170
AclWI GGATC 2 cut(s) 277, 638
AcsI RAATTY 3 cut(s) 494, 821, 1012
AcuI CTGAAG 2 cut(s) 965, 1155
AcyI GRCGYC 2 cut(s) 144, 245
AfaI GTAC 6 cut(s) 215, 324, 347, 599, 756, 1205
AfiI CCNNNNNNNGG 4 cut(s) 78, 157, 781, 851
AgsI TTSAA 6 cut(s) 390, 487, 727, 1123, 1286, 1311
AjnI CCWGG 1 cut(s) 577
AluBI AGCT 6 cut(s) 165, 263, 320, 974, 1058, 1153
AluI AGCT 6 cut(s) 165, 263, 320, 974, 1058, 1153
Alw21I GWGCWC 3 cut(s) 167, 265, 976
Alw26I GTCTC 3 cut(s) 12, 252, 944
AlwI GGATC 2 cut(s) 277, 638
AlwNI CAGNNNCTG 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 428, 1055
ApoI RAATTY 3 cut(s) 494, 821, 1012
AspLEI GCGC 3 cut(s) 146, 433, 1128
AsuHPI GGTGA 2 cut(s) 817, 1085
AxyI CCTNAGG 1 cut(s) 625
BanI GGYRCC 2 cut(s) 143, 1262
BanII GRGCYC 3 cut(s) 167, 265, 976
Bbv12I GWGCWC 3 cut(s) 167, 265, 976
BbvI GCAGC 2 cut(s) 415, 1067
BccI CCATC 4 cut(s) 554, 557, 956, 1070
BceAI ACGGC 1 cut(s) 587
BciT130I CCWGG 1 cut(s) 579
BciVI GTATCC 1 cut(s) 366
BclI TGATCA 2 cut(s) 330, 768
BcoDI GTCTC 3 cut(s) 12, 252, 944
BfaI CTAG 1 cut(s) 1109
BfmI CTRYAG 1 cut(s) 613
BfoI RGCGCY 1 cut(s) 147
BfuI GTATCC 1 cut(s) 366
BisI GCNGC 3 cut(s) 147, 429, 1056
BlsI GCNGC 3 cut(s) 148, 430, 1057
Bme1390I CCNGG 1 cut(s) 579
BmiI GGNNCC 3 cut(s) 145, 1141, 1264
BmrFI CCNGG 1 cut(s) 579
BmsI GCATC 2 cut(s) 276, 889
BpmI CTGGAG 2 cut(s) 179, 1263
BpuEI CTTGAG 2 cut(s) 926, 1139
BsaHI GRCGYC 2 cut(s) 144, 245
BsaI GGTCTC 1 cut(s) 944
BsaJI CCNNGG 1 cut(s) 373
BsaWI WCCGGW 2 cut(s) 250, 965
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 157, 781, 851
Bse1I ACTGG 3 cut(s) 304, 311, 1246
Bse21I CCTNAGG 1 cut(s) 625
Bse3DI GCAATG 2 cut(s) 882, 1227
BseBI CCWGG 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 373
BseGI GGATG 2 cut(s) 549, 771
BseLI CCNNNNNNNGG 4 cut(s) 78, 157, 781, 851
BseMI GCAATG 2 cut(s) 882, 1227
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 3 cut(s) 304, 311, 1246
BseXI GCAGC 2 cut(s) 415, 1067
BseYI CCCAGC 1 cut(s) 47
Bsh1236I CGCG 2 cut(s) 433, 1128
BshNI GGYRCC 2 cut(s) 143, 1262
BsiHKAI GWGCWC 3 cut(s) 167, 265, 976
BsiSI CCGG 2 cut(s) 251, 966
BslFI GGGAC 3 cut(s) 205, 307, 424
BslI CCNNNNNNNGG 4 cut(s) 78, 157, 781, 851
BsmAI GTCTC 3 cut(s) 12, 252, 944
BsmBI CGTCTC 1 cut(s) 252
BsmFI GGGAC 3 cut(s) 205, 307, 424
BsmI GAATGC 1 cut(s) 765
Bso31I GGTCTC 1 cut(s) 944
Bsp1286I GDGCHC 3 cut(s) 167, 265, 976
Bsp1407I TGTACA 1 cut(s) 322
Bsp143I GATC 6 cut(s) 269, 330, 630, 768, 1022, 1095
BspACI CCGC 3 cut(s) 147, 1029, 1170
BspCNI CTCAG 1 cut(s) 99
BspFNI CGCG 2 cut(s) 433, 1128
BspLI GGNNCC 3 cut(s) 145, 1141, 1264
BspMAI CTGCAG 1 cut(s) 617
BspPI GGATC 2 cut(s) 277, 638
BspT107I GGYRCC 2 cut(s) 143, 1262
BspTNI GGTCTC 1 cut(s) 944
BsrBI CCGCTC 1 cut(s) 1170
BsrDI GCAATG 2 cut(s) 882, 1227
BsrGI TGTACA 1 cut(s) 322
BsrI ACTGG 3 cut(s) 304, 311, 1246
BssECI CCNNGG 1 cut(s) 373
BssMI GATC 6 cut(s) 269, 330, 630, 768, 1022, 1095
BssNAI GTATAC 1 cut(s) 789
BssNI GRCGYC 2 cut(s) 144, 245
Bst1107I GTATAC 1 cut(s) 789
Bst2UI CCWGG 1 cut(s) 579
Bst6I CTCTTC 3 cut(s) 71, 236, 391
BstACI GRCGYC 2 cut(s) 144, 245
BstAUI TGTACA 1 cut(s) 322
BstDEI CTNAG 3 cut(s) 107, 554, 625
BstF5I GGATG 2 cut(s) 549, 771
BstFNI CGCG 2 cut(s) 433, 1128
BstH2I RGCGCY 1 cut(s) 147
BstHHI GCGC 3 cut(s) 146, 433, 1128
BstKTI GATC 6 cut(s) 272, 333, 633, 771, 1025, 1098
BstMAI GTCTC 3 cut(s) 12, 252, 944
BstMBI GATC 6 cut(s) 269, 330, 630, 768, 1022, 1095
BstMWI GCNNNNNNNGC 2 cut(s) 143, 1026
BstNI CCWGG 1 cut(s) 579
BstSCI CCNGG 1 cut(s) 577
BstSFI CTRYAG 1 cut(s) 613
BstUI CGCG 2 cut(s) 433, 1128
BstV1I GCAGC 2 cut(s) 415, 1067
BstZ17I GTATAC 1 cut(s) 789
Bsu36I CCTNAGG 1 cut(s) 625
BsuI GTATCC 1 cut(s) 366
BtgZI GCGATG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 549, 771
BtsI GCAGTG 2 cut(s) 38, 1305
BtsIMutI CAGTG 4 cut(s) 38, 174, 1105, 1305
CaiI CAGNNNCTG 1 cut(s) 157
CfoI GCGC 3 cut(s) 146, 433, 1128
CseI GACGC 1 cut(s) 234
Csp6I GTAC 6 cut(s) 214, 323, 346, 598, 755, 1204
CspCI CAANNNNNGTGG 2 cut(s) 1209, 1244
CviAII CATG 3 cut(s) 86, 440, 461
CviQI GTAC 6 cut(s) 214, 323, 346, 598, 755, 1204
DdeI CTNAG 3 cut(s) 107, 554, 625
DinI GGCGCC 1 cut(s) 145
DpnI GATC 6 cut(s) 271, 332, 632, 770, 1024, 1097
DpnII GATC 6 cut(s) 269, 330, 630, 768, 1022, 1095
Eam1104I CTCTTC 3 cut(s) 71, 236, 391
EarI CTCTTC 3 cut(s) 71, 236, 391
Ecl136II GAGCTC 3 cut(s) 165, 263, 974
Eco24I GRGCYC 3 cut(s) 167, 265, 976
Eco31I GGTCTC 1 cut(s) 944
Eco32I GATATC 1 cut(s) 717
Eco53kI GAGCTC 3 cut(s) 165, 263, 974
Eco57I CTGAAG 2 cut(s) 965, 1155
Eco81I CCTNAGG 1 cut(s) 625
EcoICRI GAGCTC 3 cut(s) 165, 263, 974
EcoRI GAATTC 2 cut(s) 494, 821
EcoRII CCWGG 1 cut(s) 577
EcoRV GATATC 1 cut(s) 717
EcoT38I GRGCYC 3 cut(s) 167, 265, 976
EgeI GGCGCC 1 cut(s) 145
EheI GGCGCC 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 3 cut(s) 89, 443, 464
FaqI GGGAC 3 cut(s) 205, 307, 424
FatI CATG 3 cut(s) 85, 439, 460
FauNDI CATATG 1 cut(s) 1258
FbaI TGATCA 2 cut(s) 330, 768
FblI GTMKAC 3 cut(s) 788, 925, 1272
Fnu4HI GCNGC 3 cut(s) 147, 429, 1056
FokI GGATG 2 cut(s) 536, 758
FriOI GRGCYC 3 cut(s) 167, 265, 976
Fsp4HI GCNGC 3 cut(s) 147, 429, 1056
FspBI CTAG 1 cut(s) 1109
GlaI GCGC 3 cut(s) 145, 432, 1127
GluI GCNGC 3 cut(s) 147, 429, 1056
GsaI CCCAGC 1 cut(s) 51
GsuI CTGGAG 2 cut(s) 179, 1263
HaeII RGCGCY 1 cut(s) 147
HapII CCGG 2 cut(s) 251, 966
HgaI GACGC 1 cut(s) 234
HhaI GCGC 3 cut(s) 146, 433, 1128
Hin1I GRCGYC 2 cut(s) 144, 245
Hin1II CATG 3 cut(s) 89, 443, 464
Hin6I GCGC 3 cut(s) 144, 431, 1126
HinP1I GCGC 3 cut(s) 144, 431, 1126
HincII GTYRAC 2 cut(s) 172, 926
HindII GTYRAC 2 cut(s) 172, 926
HinfI GANTC 8 cut(s) 5, 14, 56, 82, 154, 686, 927, 1080
HpaII CCGG 2 cut(s) 251, 966
HphI GGTGA 2 cut(s) 817, 1085
Hpy166II GTNNAC 5 cut(s) 172, 214, 789, 926, 1273
Hpy188I TCNGA 4 cut(s) 108, 377, 530, 714
Hpy188III TCNNGA 3 cut(s) 11, 158, 683
Hpy8I GTNNAC 5 cut(s) 172, 214, 789, 926, 1273
Hpy99I CGWCG 1 cut(s) 202
HpyAV CCTTC 4 cut(s) 458, 721, 989, 1130
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 8 cut(s) 100, 227, 443, 615, 875, 902, 1148, 1181
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 1026
HpyF3I CTNAG 3 cut(s) 107, 554, 625
HpySE526I ACGT 1 cut(s) 197
Hsp92I GRCGYC 2 cut(s) 144, 245
Hsp92II CATG 3 cut(s) 89, 443, 464
HspAI GCGC 3 cut(s) 144, 431, 1126
KasI GGCGCC 1 cut(s) 143
Ksp22I TGATCA 2 cut(s) 330, 768
Kzo9I GATC 6 cut(s) 269, 330, 630, 768, 1022, 1095
LmnI GCTCC 3 cut(s) 48, 971, 1139
Lsp1109I GCAGC 2 cut(s) 415, 1067
LweI GCATC 2 cut(s) 276, 889
MaeI CTAG 1 cut(s) 1109
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 3 cut(s) 540, 795, 838
MalI GATC 6 cut(s) 271, 332, 632, 770, 1024, 1097
MbiI CCGCTC 1 cut(s) 1170
MboI GATC 6 cut(s) 269, 330, 630, 768, 1022, 1095
MboII GAAGA 9 cut(s) 88, 223, 378, 681, 998, 1111, 1180, 1274, 1299
MhlI GDGCHC 3 cut(s) 167, 265, 976
MluCI AATT 5 cut(s) 360, 494, 821, 1012, 1035
Mly113I GGCGCC 1 cut(s) 144
MlyI GAGTC 5 cut(s) 14, 50, 76, 921, 1089
MmeI TCCRAC 2 cut(s) 508, 869
MnlI CCTC 6 cut(s) 72, 383, 394, 562, 1210, 1285
MseI TTAA 2 cut(s) 650, 1086
MslI CAYNNNNRTG 2 cut(s) 638, 811
MspI CCGG 2 cut(s) 251, 966
MspR9I CCNGG 1 cut(s) 579
Mva1269I GAATGC 1 cut(s) 765
MvaI CCWGG 1 cut(s) 579
MvnI CGCG 2 cut(s) 433, 1128
MwoI GCNNNNNNNGC 2 cut(s) 143, 1026
NarI GGCGCC 1 cut(s) 144
NdeI CATATG 1 cut(s) 1258
NdeII GATC 6 cut(s) 269, 330, 630, 768, 1022, 1095
NlaIII CATG 3 cut(s) 89, 443, 464
NlaIV GGNNCC 3 cut(s) 145, 1141, 1264
NmuCI GTSAC 1 cut(s) 540
PctI GAATGC 1 cut(s) 765
PfeI GAWTC 3 cut(s) 14, 154, 686
PflFI GACNNNGTC 1 cut(s) 196
PflMI CCANNNNNTGG 1 cut(s) 157
PkrI GCNGC 3 cut(s) 148, 430, 1057
PleI GAGTC 5 cut(s) 13, 50, 76, 921, 1088
PluTI GGCGCC 1 cut(s) 147
PpsI GAGTC 5 cut(s) 13, 50, 76, 921, 1088
Psp124BI GAGCTC 3 cut(s) 167, 265, 976
Psp6I CCWGG 1 cut(s) 577
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 1 cut(s) 577
PspN4I GGNNCC 3 cut(s) 145, 1141, 1264
PstI CTGCAG 1 cut(s) 617
PstNI CAGNNNCTG 1 cut(s) 157
PsyI GACNNNGTC 1 cut(s) 196
RsaI GTAC 6 cut(s) 215, 324, 347, 599, 756, 1205
RsaNI GTAC 6 cut(s) 214, 323, 346, 598, 755, 1204
RseI CAYNNNNRTG 2 cut(s) 638, 811
SacI GAGCTC 3 cut(s) 167, 265, 976
SalI GTCGAC 1 cut(s) 924
SaqAI TTAA 2 cut(s) 650, 1086
SatI GCNGC 3 cut(s) 147, 429, 1056
Sau3AI GATC 6 cut(s) 269, 330, 630, 768, 1022, 1095
SchI GAGTC 5 cut(s) 14, 50, 76, 921, 1089
ScrFI CCNGG 1 cut(s) 579
SduI GDGCHC 3 cut(s) 167, 265, 976
SfaNI GCATC 2 cut(s) 276, 889
SfcI CTRYAG 1 cut(s) 613
SfoI GGCGCC 1 cut(s) 145
SmiMI CAYNNNNRTG 2 cut(s) 638, 811
SmlI CTYRAG 2 cut(s) 941, 1154
SmoI CTYRAG 2 cut(s) 941, 1154
Sse9I AATT 5 cut(s) 360, 494, 821, 1012, 1035
SsiI CCGC 3 cut(s) 147, 1029, 1170
SspDI GGCGCC 1 cut(s) 143
SspMI CTAG 1 cut(s) 1109
SstI GAGCTC 3 cut(s) 167, 265, 976
StyD4I CCNGG 1 cut(s) 577
TaiI ACGT 1 cut(s) 200
TaqI TCGA 3 cut(s) 259, 750, 925
TasI AATT 5 cut(s) 360, 494, 821, 1012, 1035
TatI WGTACW 2 cut(s) 213, 322
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 3 cut(s) 14, 154, 686
Tru1I TTAA 2 cut(s) 650, 1086
Tru9I TTAA 2 cut(s) 650, 1086
TscAI CASTG 4 cut(s) 45, 181, 1105, 1305
TseFI GTSAC 1 cut(s) 540
TseI GCWGC 2 cut(s) 428, 1055
Tsp45I GTSAC 1 cut(s) 540
TspDTI ATGAA 1 cut(s) 477
TspGWI ACGGA 1 cut(s) 1191
TspRI CASTG 4 cut(s) 45, 181, 1105, 1305
Tth111I GACNNNGTC 1 cut(s) 196
Van91I CCANNNNNTGG 1 cut(s) 157
XapI RAATTY 3 cut(s) 494, 821, 1012
XmiI GTMKAC 3 cut(s) 788, 925, 1272
XspI CTAG 1 cut(s) 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.