Rw3G012660

UNC93-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006088
Physical Location & Seq
Reverse (-)
12473206 .. 12476831
3626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G012660.1

Sequence Viewer

Length: 978 bp
ATGGTTCCAGCTGCATTGTATCTGGGTTTTGCTGCTTCCATAATATGGGTTGGCCAGGGGACATATTTGACTTCTACTGCACGTAGTCATGCCAGAGATAATAGCTTACATGAAGGAACGGTTATTGGCCACTTCAATGGAGAATTTTGGGGAATGTTTGCCAGTCACCAGTTTGTGGGAAATCTTATAACCCTCGCCTTGCTAAGAGATGGAACAGGGGGGAGTACTAATGGCACAACCTTATTATTCAGTGTGTTTCTTGTTAGTATGACCTTAGGTACCATACTGATGTGCTTCTTGAATAAAAGGGGTATTAAAGGAGAGGAGGACCCCCAGGGATCTTCTCCCAACTTTTATGCTTCTGTGGTATCTTTGTCAAAGACAGTCATCAGACCTTTGTATGATGTACGGATGCTATTGATCATCCCCCTTATGGCGTATTCAGGATTGCAACAAGCATTTGTATGGGCTGACTATACCGAGTATATTGTTAGTCCAACACTTGGTGTGTCTGGTGTTGGAGGTGCAATGGCAGTTTATGGGGCATGTGATGCAATATGTTCATTGGCTGCTGGTCGATTTACGTCTGGTCTCAAGTCCATCACTATTATAGTTTCTGCTGGAGCTTTCATTCAGACCATTATATACCTCTGGCTTCTTCTAATATACAGCCCAGTGAGTGGAGTACTTGGAACTGTATACCCTCTTATAATGGCAGCTGCATTGGGCATTGGTGATGGAGTCTTAAATACACAGCTCAGTGCTTTGCTTGCGATATACTTCAAGCATGATACTGAAGGAGCATTTGCACAGCTCAAGGTCTGGCAGAGTTGTACGATTTCAGCCGTCTTCTTTATTAGTCCATACATCTCATTACAGGCAATGCTGGTGGTTATGCTTGTTACAGTCTCTGTCGCATATGGTGCCTTTATGTATCTATCTATTCGAGAGAAAGCACTCTCCCATTCAAGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UNC-93

Protein Analysis

325

Amino Acids

34.73

Weight (kDa)

6.99

Isoelectric Point (pI)

27.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UNC-93 PF05978 7 - 307 1.8e-25 Ion channel regulatory protein UNC-93
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 188, 710
Acc65I GGTACC 1 cut(s) 278
AccB1I GGYRCC 2 cut(s) 278, 923
AccB7I CCANNNNNTGG 4 cut(s) 45, 175, 503, 680
AccI GTMKAC 1 cut(s) 699
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 2 cut(s) 52, 127
AcsI RAATTY 1 cut(s) 143
AcuI CTGAAG 1 cut(s) 816
AdeI CACNNNGTG 1 cut(s) 506
AfaI GTAC 5 cut(s) 226, 280, 408, 687, 835
AfiI CCNNNNNNNGG 5 cut(s) 45, 175, 433, 503, 680
AgsI TTSAA 4 cut(s) 136, 301, 784, 969
AjnI CCWGG 2 cut(s) 54, 333
AluBI AGCT 6 cut(s) 11, 105, 626, 719, 757, 814
AluI AGCT 6 cut(s) 11, 105, 626, 719, 757, 814
Alw26I GTCTC 2 cut(s) 596, 913
AlwI GGATC 1 cut(s) 346
AlwNI CAGNNNCTG 1 cut(s) 911
AoxI GGCC 2 cut(s) 52, 127
ApeKI GCWGC 5 cut(s) 11, 32, 569, 716, 719
ApoI RAATTY 1 cut(s) 143
Asp718I GGTACC 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 328
AsuHPI GGTGA 2 cut(s) 158, 746
AvaII GGWCC 1 cut(s) 328
AxyI CCTNAGG 1 cut(s) 274
BalI TGGCCA 2 cut(s) 54, 129
BanI GGYRCC 2 cut(s) 278, 923
BbsI GAAGAC 1 cut(s) 841
BbvI GCAGC 4 cut(s) 19, 556, 706, 728
BccI CCATC 3 cut(s) 203, 608, 731
BceAI ACGGC 1 cut(s) 830
BciT130I CCWGG 2 cut(s) 56, 335
BclI TGATCA 1 cut(s) 420
BcoDI GTCTC 2 cut(s) 596, 913
BisI GCNGC 5 cut(s) 12, 33, 570, 717, 720
BlsI GCNGC 5 cut(s) 13, 34, 571, 718, 721
BmcAI AGTACT 2 cut(s) 226, 687
Bme1390I CCNGG 2 cut(s) 56, 335
Bme18I GGWCC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 4 cut(s) 6, 280, 330, 925
BmrFI CCNGG 2 cut(s) 56, 335
BmrI ACTGGG 1 cut(s) 668
BmsI GCATC 2 cut(s) 402, 541
BmuI ACTGGG 1 cut(s) 668
BpiI GAAGAC 1 cut(s) 841
BpmI CTGGAG 1 cut(s) 642
BpuEI CTTGAG 2 cut(s) 578, 800
BsaAI YACGTR 1 cut(s) 83
BsaI GGTCTC 1 cut(s) 596
BsaJI CCNNGG 3 cut(s) 55, 333, 334
Bsc4I CCNNNNNNNGG 5 cut(s) 45, 175, 433, 503, 680
Bse1I ACTGG 3 cut(s) 162, 169, 674
Bse21I CCTNAGG 1 cut(s) 274
Bse3DI GCAATG 2 cut(s) 534, 888
BseBI CCWGG 2 cut(s) 56, 335
BseDI CCNNGG 3 cut(s) 55, 333, 334
BseGI GGATG 2 cut(s) 417, 423
BseLI CCNNNNNNNGG 5 cut(s) 45, 175, 433, 503, 680
BseMI GCAATG 2 cut(s) 534, 888
BseMII CTCAG 1 cut(s) 772
BseNI ACTGG 3 cut(s) 162, 169, 674
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 4 cut(s) 19, 556, 706, 728
BsgI GTGCAG 1 cut(s) 63
BshFI GGCC 2 cut(s) 54, 129
BshNI GGYRCC 2 cut(s) 278, 923
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 5 cut(s) 45, 175, 433, 503, 680
BsmAI GTCTC 2 cut(s) 596, 913
BsmFI GGGAC 1 cut(s) 73
BsnI GGCC 2 cut(s) 54, 129
Bso31I GGTCTC 1 cut(s) 596
Bsp143I GATC 2 cut(s) 338, 420
BspANI GGCC 2 cut(s) 54, 129
BspCNI CTCAG 1 cut(s) 771
BspLI GGNNCC 4 cut(s) 6, 280, 330, 925
BspPI GGATC 1 cut(s) 346
BspT107I GGYRCC 2 cut(s) 278, 923
BspTNI GGTCTC 1 cut(s) 596
BsrDI GCAATG 2 cut(s) 534, 888
BsrI ACTGG 3 cut(s) 162, 169, 674
BssECI CCNNGG 3 cut(s) 55, 333, 334
BssMI GATC 2 cut(s) 338, 420
BssNAI GTATAC 1 cut(s) 700
Bst1107I GTATAC 1 cut(s) 700
Bst2UI CCWGG 2 cut(s) 56, 335
Bst4CI ACNGT 4 cut(s) 121, 385, 697, 907
BstAPI GCANNNNNTGC 2 cut(s) 551, 923
BstBAI YACGTR 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 771
BstDEI CTNAG 3 cut(s) 203, 274, 758
BstF5I GGATG 2 cut(s) 417, 423
BstKTI GATC 2 cut(s) 341, 423
BstMAI GTCTC 2 cut(s) 596, 913
BstMBI GATC 2 cut(s) 338, 420
BstMWI GCNNNNNNNGC 3 cut(s) 551, 770, 923
BstNI CCWGG 2 cut(s) 56, 335
BstNSI RCATGY 1 cut(s) 549
BstSCI CCNGG 2 cut(s) 54, 333
BstV1I GCAGC 4 cut(s) 19, 556, 706, 728
BstV2I GAAGAC 1 cut(s) 841
BstX2I RGATCY 1 cut(s) 338
BstXI CCANNNNNNTGG 1 cut(s) 137
BstYI RGATCY 1 cut(s) 338
BstZ17I GTATAC 1 cut(s) 700
Bsu36I CCTNAGG 1 cut(s) 274
BsuRI GGCC 2 cut(s) 54, 129
BtsCI GGATG 2 cut(s) 417, 423
BtsIMutI CAGTG 3 cut(s) 256, 681, 766
Cac8I GCNNGC 1 cut(s) 771
CaiI CAGNNNCTG 1 cut(s) 911
Cfr13I GGNCC 1 cut(s) 328
Csp6I GTAC 5 cut(s) 225, 279, 407, 686, 834
CspCI CAANNNNNGTGG 2 cut(s) 870, 905
CviAII CATG 4 cut(s) 89, 110, 546, 788
CviQI GTAC 5 cut(s) 225, 279, 407, 686, 834
DdeI CTNAG 3 cut(s) 203, 274, 758
DpnI GATC 2 cut(s) 340, 422
DpnII GATC 2 cut(s) 338, 420
DraIII CACNNNGTG 1 cut(s) 506
EaeI YGGCCR 2 cut(s) 52, 127
Eco31I GGTCTC 1 cut(s) 596
Eco47I GGWCC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 816
Eco81I CCTNAGG 1 cut(s) 274
EcoO109I RGGNCCY 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 54, 333
FaeI CATG 4 cut(s) 92, 113, 549, 791
FaqI GGGAC 1 cut(s) 73
FatI CATG 4 cut(s) 88, 109, 545, 787
FauNDI CATATG 1 cut(s) 919
FbaI TGATCA 1 cut(s) 420
FblI GTMKAC 1 cut(s) 699
Fnu4HI GCNGC 5 cut(s) 12, 33, 570, 717, 720
FokI GGATG 2 cut(s) 410, 424
Fsp4HI GCNGC 5 cut(s) 12, 33, 570, 717, 720
GluI GCNGC 5 cut(s) 12, 33, 570, 717, 720
GsuI CTGGAG 1 cut(s) 642
HaeIII GGCC 2 cut(s) 54, 129
Hin1II CATG 4 cut(s) 92, 113, 549, 791
HinfI GANTC 1 cut(s) 741
HphI GGTGA 2 cut(s) 158, 746
Hpy166II GTNNAC 1 cut(s) 700
Hpy188I TCNGA 2 cut(s) 392, 636
Hpy188III TCNNGA 3 cut(s) 298, 444, 947
Hpy8I GTNNAC 1 cut(s) 700
HpyAV CCTTC 2 cut(s) 107, 791
HpyCH4III ACNGT 4 cut(s) 121, 385, 697, 907
HpyCH4IV ACGT 2 cut(s) 82, 584
HpyCH4V TGCA 7 cut(s) 14, 80, 451, 527, 554, 722, 809
HpyF10VI GCNNNNNNNGC 3 cut(s) 551, 770, 923
HpyF3I CTNAG 3 cut(s) 203, 274, 758
HpySE526I ACGT 2 cut(s) 82, 584
Hsp92II CATG 4 cut(s) 92, 113, 549, 791
KpnI GGTACC 1 cut(s) 282
Ksp22I TGATCA 1 cut(s) 420
Kzo9I GATC 2 cut(s) 338, 420
LmnI GCTCC 2 cut(s) 623, 800
Lsp1109I GCAGC 4 cut(s) 19, 556, 706, 728
LweI GCATC 2 cut(s) 402, 541
MaeII ACGT 2 cut(s) 82, 584
MaeIII GTNAC 2 cut(s) 164, 901
MalI GATC 2 cut(s) 340, 422
MboI GATC 2 cut(s) 338, 420
MboII GAAGA 3 cut(s) 333, 650, 841
MflI RGATCY 1 cut(s) 338
MlsI TGGCCA 2 cut(s) 54, 129
MluCI AATT 1 cut(s) 143
MluNI TGGCCA 2 cut(s) 54, 129
MlyI GAGTC 1 cut(s) 750
MmeI TCCRAC 2 cut(s) 499, 521
MnlI CCTC 6 cut(s) 203, 316, 319, 515, 659, 714
Mox20I TGGCCA 2 cut(s) 54, 129
MscI TGGCCA 2 cut(s) 54, 129
MseI TTAA 2 cut(s) 315, 746
MslI CAYNNNNRTG 3 cut(s) 135, 287, 463
Msp20I TGGCCA 2 cut(s) 54, 129
MspA1I CMGCKG 2 cut(s) 11, 719
MspR9I CCNGG 2 cut(s) 56, 335
MvaI CCWGG 2 cut(s) 56, 335
MwoI GCNNNNNNNGC 3 cut(s) 551, 770, 923
NdeI CATATG 1 cut(s) 919
NdeII GATC 2 cut(s) 338, 420
NlaIII CATG 4 cut(s) 92, 113, 549, 791
NlaIV GGNNCC 4 cut(s) 6, 280, 330, 925
NmuCI GTSAC 1 cut(s) 164
NspI RCATGY 1 cut(s) 549
PasI CCCWGGG 1 cut(s) 334
PflMI CCANNNNNTGG 4 cut(s) 45, 175, 503, 680
PkrI GCNGC 5 cut(s) 13, 34, 571, 718, 721
PleI GAGTC 1 cut(s) 749
PpsI GAGTC 1 cut(s) 749
Ppu21I YACGTR 1 cut(s) 83
PpuMI RGGWCCY 1 cut(s) 328
PsiI TTATAA 2 cut(s) 188, 710
Psp5II RGGWCCY 1 cut(s) 328
Psp6I CCWGG 2 cut(s) 54, 333
PspGI CCWGG 2 cut(s) 54, 333
PspN4I GGNNCC 4 cut(s) 6, 280, 330, 925
PspPI GGNCC 1 cut(s) 328
PspPPI RGGWCCY 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 1 cut(s) 338
PvuII CAGCTG 2 cut(s) 11, 719
RsaI GTAC 5 cut(s) 226, 280, 408, 687, 835
RsaNI GTAC 5 cut(s) 225, 279, 407, 686, 834
RseI CAYNNNNRTG 3 cut(s) 135, 287, 463
SaqAI TTAA 2 cut(s) 315, 746
SatI GCNGC 5 cut(s) 12, 33, 570, 717, 720
Sau3AI GATC 2 cut(s) 338, 420
Sau96I GGNCC 1 cut(s) 328
ScaI AGTACT 2 cut(s) 226, 687
SchI GAGTC 1 cut(s) 750
ScrFI CCNGG 2 cut(s) 56, 335
SfaNI GCATC 2 cut(s) 402, 541
SinI GGWCC 1 cut(s) 328
SmiMI CAYNNNNRTG 3 cut(s) 135, 287, 463
SmlI CTYRAG 2 cut(s) 593, 815
SmoI CTYRAG 2 cut(s) 593, 815
Sse9I AATT 1 cut(s) 143
StyD4I CCNGG 2 cut(s) 54, 333
TaaI ACNGT 4 cut(s) 121, 385, 697, 907
TaiI ACGT 2 cut(s) 85, 587
TaqI TCGA 2 cut(s) 577, 946
TasI AATT 1 cut(s) 143
TatI WGTACW 2 cut(s) 224, 685
Tru1I TTAA 2 cut(s) 315, 746
Tru9I TTAA 2 cut(s) 315, 746
TscAI CASTG 3 cut(s) 256, 681, 766
TseFI GTSAC 1 cut(s) 164
TseI GCWGC 5 cut(s) 11, 32, 569, 716, 719
Tsp45I GTSAC 1 cut(s) 164
TspDTI ATGAA 4 cut(s) 126, 552, 619, 963
TspGWI ACGGA 1 cut(s) 424
TspRI CASTG 3 cut(s) 256, 681, 766
Van91I CCANNNNNTGG 4 cut(s) 45, 175, 503, 680
VpaK11BI GGWCC 1 cut(s) 328
XapI RAATTY 1 cut(s) 143
XceI RCATGY 1 cut(s) 549
XmiI GTMKAC 1 cut(s) 699
ZrmI AGTACT 2 cut(s) 226, 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.