Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006088

Physical Location & Seq

Genomic Coordinates Forward (+)

20896996 .. 20900359

Gene Structure 3364 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1123400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGACTCTGCCGGTTTTCCCGACGAAGAGACGCCGCTGGTGGTGGATAATTCGCCGATTCAGAGTCGTAGGAGGCATACCAGAGATGTGCATATTCTCAGCTGTGCCTTCTTGCTGATTTTTCTGGCTTATGGGGCCGCGCAGAATCTAGAGACAAGTGTCAACACTGAGGATGATTTGGGGACAATTTCACTTGGGATTTTGTATTTGTCTTTCACATTTTTCTCTATGGTGGCGTCTCCGGTGGTTCGAGCATTGGGATCAAAGAATGCTTTGATTCTTGGGACTACTGGCTATTGGTTGTTCATAGCTGCAAACTTGATACCCTCTTGGTATACTATGGTTCCGGCTTCTTTGTACATGGGATTTGCTGCTTCGATAATATGGGTTGGGCAGGGGACATATCTTACTTCTACTGCACGTAGTCATGCCAAAGATTATAACTTACATGAAGGAACAGTCATTGGCCACTTCAATGGAGAATTTTGGGGAATGTTTGCCACTCACCAGTTTGTGGGAAATCTTATATCACTCGCCGTGCTAACAGATGGAACAGGGGGAAGTACTAATAGCACAACCTTATTGTTCAGCGTGTTTCTCATCAGTATGACTTTGGGTACCATACTGATGTGCTTCTTGCATAAAAGGAATGGTAAAGCAGAGGAGAACACCCAGGATTCTTCTCCCAGCTTCTATGCTTCTCTGTTGTCTTTGTCAAAGGCAATTGTCACTCCTCTGTATGATGTAAGGATGTTATTGATCATCCCCCTCATGGCGTATTCAGGATTGCAACAAGCATTTGTGTGGGCCGAATACACCAAGTATATTGTTACTCCAACACTTGGTGTGCCTGGCGTGGGTGGTGCAATGGCAGTTTATGGAGCTTTTGATGCAATCTGTTCACTGGCTGCTGGTCGACTTACCTCTGGTCTCAAGTCCATTACTATTATAATTTCTGGTGGAGTCCTCCTTCAGGCTATAATATTCCTGTGGATTCTTCTAGGATACAGCGCGGAGAGTGGTGTCCTCGGAATTGTCTACCCTCTTATAATGGCAGCTGTATTGGGTGTTGGTGATGGAGTCTTAAACACACAGCTCAGTGCTTTGCTTGGGATATTCTTCAAGAACGACACGGAAGGAGCATTTGCACAGCTCAAGGTCTGGCAGAGTGCTTCGATTGCAGTCATCTTCTTTATCAGTTCATACATCTCATTGCAGGCAATGCTGATCGTTATGCTTGCCGCTGTTGCAATCTCATATGCTGCCTTTGTTTGTCTCTCGCTTCGAGAGAAAGCATTCCAGTCTTCAACTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UNC-93

Protein Analysis

439

Amino Acids

47.02

Weight (kDa)

5.78

Isoelectric Point (pI)

32.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	37 - 377	5.5e-06	Major Facilitator Superfamily
UNC-93	PF05978	61 - 424	8e-37	Ion channel regulatory protein UNC-93

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09470
fragaria_vesca	FvH4_6g14211 FvH4_6g14220
malus_domestica	MD04G1123300.v1.1 MD04G1123400.v1.1 MD12G1139300.v1.1
prunus_persica	Prupe.6G251000_v2.0.a1 Prupe.6G251000_v2.0.a1 Prupe.6G251100_v2.0.a1
pyrus_communis	pycom04g11130 pycom12g13360
rosa_chinensis	RchiOBHm_Chr3g0467171 RchiOBHm_Chr3g0467181
rosa_laevigata	RLG00000024521 RLG00000024522
rosa_multiflora	Rmu_sc0000962.1_g000075 Rmu_sc0000962.1_g000078
rosa_roxburghii	Rroxscaffold_6G00413840 Rroxscaffold_6G00413850
rosa_rugosa	Rorug03G0085600
rosa_samantha	Rh3AG133800 Rh3AG133900 Rh3CG154900 Rh3DG156000 Rh3DG156100
rosa_wichuraiana	Rw3G012660 Rw3G012670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	441, 950, 1049
Acc65I	GGTACC	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	617
AccB7I	CCANNNNNTGG	2 cut(s)	514, 842
AccI	GTMKAC	3 cut(s)	335, 916, 1038
AccII	CGCG	2 cut(s)	140, 1013
AciI	CCGC	4 cut(s)	35, 138, 1013, 1242
AclWI	GGATC	1 cut(s)	268
AcoI	YGGCCR	1 cut(s)	466
AcsI	RAATTY	1 cut(s)	482
AcuI	CTGAAG	1 cut(s)	956
AcyI	GRCGYC	2 cut(s)	32, 236
AdeI	CACNNNGTG	1 cut(s)	845
AfaI	GTAC	3 cut(s)	359, 565, 619
AfiI	CCNNNNNNNGG	5 cut(s)	514, 772, 842, 857, 973
AgsI	TTSAA	3 cut(s)	475, 1123, 1308
AjnI	CCWGG	2 cut(s)	672, 850
AluBI	AGCT	7 cut(s)	102, 311, 690, 884, 1058, 1096, 1153
AluI	AGCT	7 cut(s)	102, 311, 690, 884, 1058, 1096, 1153
Alw26I	GTCTC	5 cut(s)	23, 146, 243, 935, 1280
AlwI	GGATC	1 cut(s)	268
AoxI	GGCC	3 cut(s)	135, 466, 807
ApeKI	GCWGC	5 cut(s)	311, 371, 908, 1055, 1262
ApoI	RAATTY	1 cut(s)	482
Asp700I	GAANNNNTTC	1 cut(s)	1295
Asp718I	GGTACC	1 cut(s)	617
AspLEI	GCGC	2 cut(s)	142, 1013
AspS9I	GGNCC	2 cut(s)	135, 807
AsuHPI	GGTGA	2 cut(s)	497, 1085
BalI	TGGCCA	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	617
BbsI	GAAGAC	1 cut(s)	1296
BbvI	GCAGC	5 cut(s)	298, 358, 895, 1067, 1249
BccI	CCATC	2 cut(s)	542, 1070
BceAI	ACGGC	1 cut(s)	521
BciT130I	CCWGG	2 cut(s)	674, 852
BciVI	GTATCC	1 cut(s)	998
BclI	TGATCA	1 cut(s)	759
BcoDI	GTCTC	5 cut(s)	23, 146, 243, 935, 1280
BfaI	CTAG	2 cut(s)	149, 1001
BfuI	GTATCC	1 cut(s)	998
BisI	GCNGC	8 cut(s)	35, 138, 312, 372, 909, 1056, 1242, 1263
BlsI	GCNGC	8 cut(s)	36, 139, 313, 373, 910, 1057, 1243, 1264
BmcAI	AGTACT	1 cut(s)	565
Bme1390I	CCNGG	2 cut(s)	674, 852
BmgT120I	GGNCC	2 cut(s)	135, 807
BmiI	GGNNCC	3 cut(s)	136, 345, 619
BmrFI	CCNGG	2 cut(s)	674, 852
BmsI	GCATC	1 cut(s)	880
BoxI	GACNNNNGTC	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	1296
BpuEI	CTTGAG	2 cut(s)	917, 1139
BsaAI	YACGTR	1 cut(s)	422
BsaHI	GRCGYC	2 cut(s)	32, 236
BsaI	GGTCTC	1 cut(s)	935
BsaJI	CCNNGG	2 cut(s)	672, 1027
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	5 cut(s)	514, 772, 842, 857, 973
Bse118I	RCCGGY	1 cut(s)	11
Bse1I	ACTGG	4 cut(s)	295, 508, 909, 1300
Bse3DI	GCAATG	3 cut(s)	873, 1211, 1227
BseBI	CCWGG	2 cut(s)	674, 852
BseDI	CCNNGG	2 cut(s)	672, 1027
BseGI	GGATG	3 cut(s)	178, 756, 762
BseLI	CCNNNNNNNGG	5 cut(s)	514, 772, 842, 857, 973
BseMI	GCAATG	3 cut(s)	873, 1211, 1227
BseMII	CTCAG	3 cut(s)	112, 159, 1111
BseNI	ACTGG	4 cut(s)	295, 508, 909, 1300
BseRI	GAGGAG	2 cut(s)	677, 723
BseXI	GCAGC	5 cut(s)	298, 358, 895, 1067, 1249
BseYI	CCCAGC	1 cut(s)	686
BsgI	GTGCAG	1 cut(s)	402
Bsh1236I	CGCG	2 cut(s)	140, 1013
BshFI	GGCC	3 cut(s)	137, 468, 809
BshNI	GGYRCC	1 cut(s)	617
BsiSI	CCGG	3 cut(s)	12, 242, 347
BslFI	GGGAC	3 cut(s)	196, 298, 412
BslI	CCNNNNNNNGG	5 cut(s)	514, 772, 842, 857, 973
BsmAI	GTCTC	5 cut(s)	23, 146, 243, 935, 1280
BsmBI	CGTCTC	2 cut(s)	23, 243
BsmFI	GGGAC	3 cut(s)	196, 298, 412
BsmI	GAATGC	2 cut(s)	274, 1295
BsnI	GGCC	3 cut(s)	137, 468, 809
Bso31I	GGTCTC	1 cut(s)	935
Bsp1407I	TGTACA	1 cut(s)	357
Bsp143I	GATC	3 cut(s)	260, 759, 1227
BspACI	CCGC	4 cut(s)	35, 138, 1013, 1242
BspANI	GGCC	3 cut(s)	137, 468, 809
BspCNI	CTCAG	3 cut(s)	111, 160, 1110
BspFNI	CGCG	2 cut(s)	140, 1013
BspLI	GGNNCC	3 cut(s)	136, 345, 619
BspPI	GGATC	1 cut(s)	268
BspT107I	GGYRCC	1 cut(s)	617
BspTNI	GGTCTC	1 cut(s)	935
BsrDI	GCAATG	3 cut(s)	873, 1211, 1227
BsrFI	RCCGGY	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	357
BsrI	ACTGG	4 cut(s)	295, 508, 909, 1300
BssAI	RCCGGY	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	672, 1027
BssMI	GATC	3 cut(s)	260, 759, 1227
BssNAI	GTATAC	1 cut(s)	336
BssNI	GRCGYC	2 cut(s)	32, 236
Bst1107I	GTATAC	1 cut(s)	336
Bst2UI	CCWGG	2 cut(s)	674, 852
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	2 cut(s)	32, 236
BstAPI	GCANNNNNTGC	1 cut(s)	1222
BstAUI	TGTACA	1 cut(s)	357
BstBAI	YACGTR	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	1218, 1239
BstDEI	CTNAG	3 cut(s)	98, 168, 1097
BstENI	CCTNNNNNAGG	1 cut(s)	971
BstF5I	GGATG	3 cut(s)	178, 756, 762
BstFNI	CGCG	2 cut(s)	140, 1013
BstHHI	GCGC	2 cut(s)	142, 1013
BstKTI	GATC	3 cut(s)	263, 762, 1230
BstMAI	GTCTC	5 cut(s)	23, 146, 243, 935, 1280
BstMBI	GATC	3 cut(s)	260, 759, 1227
BstMWI	GCNNNNNNNGC	5 cut(s)	134, 890, 1178, 1222, 1247
BstNI	CCWGG	2 cut(s)	674, 852
BstPAI	GACNNNNGTC	1 cut(s)	158
BstSCI	CCNGG	2 cut(s)	672, 850
BstUI	CGCG	2 cut(s)	140, 1013
BstV1I	GCAGC	5 cut(s)	298, 358, 895, 1067, 1249
BstV2I	GAAGAC	1 cut(s)	1296
BstXI	CCANNNNNNTGG	1 cut(s)	476
BstZ17I	GTATAC	1 cut(s)	336
BsuI	GTATCC	1 cut(s)	998
BsuRI	GGCC	3 cut(s)	137, 468, 809
BtsCI	GGATG	3 cut(s)	178, 756, 762
BtsIMutI	CAGTG	3 cut(s)	165, 902, 1105
Cac8I	GCNNGC	2 cut(s)	1218, 1239
CfoI	GCGC	2 cut(s)	142, 1013
Cfr10I	RCCGGY	1 cut(s)	11
Cfr13I	GGNCC	2 cut(s)	135, 807
CseI	GACGC	2 cut(s)	40, 225
Csp6I	GTAC	3 cut(s)	358, 564, 618
CviAII	CATG	4 cut(s)	361, 428, 449, 772
CviQI	GTAC	3 cut(s)	358, 564, 618
DdeI	CTNAG	3 cut(s)	98, 168, 1097
DpnI	GATC	3 cut(s)	262, 761, 1229
DpnII	GATC	3 cut(s)	260, 759, 1227
DraIII	CACNNNGTG	1 cut(s)	845
EaeI	YGGCCR	1 cut(s)	466
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco31I	GGTCTC	1 cut(s)	935
Eco57I	CTGAAG	1 cut(s)	956
EcoNI	CCTNNNNNAGG	1 cut(s)	971
EcoRII	CCWGG	2 cut(s)	672, 850
Esp3I	CGTCTC	2 cut(s)	23, 243
FaeI	CATG	4 cut(s)	364, 431, 452, 775
FaqI	GGGAC	3 cut(s)	196, 298, 412
FatI	CATG	4 cut(s)	360, 427, 448, 771
FauNDI	CATATG	1 cut(s)	1258
FbaI	TGATCA	1 cut(s)	759
FblI	GTMKAC	3 cut(s)	335, 916, 1038
Fnu4HI	GCNGC	8 cut(s)	35, 138, 312, 372, 909, 1056, 1242, 1263
FokI	GGATG	3 cut(s)	185, 749, 763
Fsp4HI	GCNGC	8 cut(s)	35, 138, 312, 372, 909, 1056, 1242, 1263
FspBI	CTAG	2 cut(s)	149, 1001
GlaI	GCGC	2 cut(s)	141, 1012
GluI	GCNGC	8 cut(s)	35, 138, 312, 372, 909, 1056, 1242, 1263
GsaI	CCCAGC	1 cut(s)	690
HaeIII	GGCC	3 cut(s)	137, 468, 809
HapII	CCGG	3 cut(s)	12, 242, 347
HgaI	GACGC	2 cut(s)	40, 225
HhaI	GCGC	2 cut(s)	142, 1013
Hin1I	GRCGYC	2 cut(s)	32, 236
Hin1II	CATG	4 cut(s)	364, 431, 452, 775
Hin6I	GCGC	2 cut(s)	140, 1011
HinP1I	GCGC	2 cut(s)	140, 1011
HincII	GTYRAC	2 cut(s)	163, 917
HindII	GTYRAC	2 cut(s)	163, 917
HinfI	GANTC	9 cut(s)	5, 58, 64, 145, 277, 677, 963, 994, 1080
HpaII	CCGG	3 cut(s)	12, 242, 347
HphI	GGTGA	2 cut(s)	497, 1085
Hpy166II	GTNNAC	5 cut(s)	163, 336, 902, 917, 1039
Hpy188I	TCNGA	2 cut(s)	63, 1031
Hpy188III	TCNNGA	5 cut(s)	20, 149, 783, 1123, 1286
Hpy8I	GTNNAC	5 cut(s)	163, 336, 902, 917, 1039
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	4 cut(s)	118, 446, 980, 1130
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4IV	ACGT	1 cut(s)	421
HpyF10VI	GCNNNNNNNGC	5 cut(s)	134, 890, 1178, 1222, 1247
HpyF3I	CTNAG	3 cut(s)	98, 168, 1097
HpySE526I	ACGT	1 cut(s)	421
Hsp92I	GRCGYC	2 cut(s)	32, 236
Hsp92II	CATG	4 cut(s)	364, 431, 452, 775
HspAI	GCGC	2 cut(s)	140, 1011
KpnI	GGTACC	1 cut(s)	621
Ksp22I	TGATCA	1 cut(s)	759
Kzo9I	GATC	3 cut(s)	260, 759, 1227
LmnI	GCTCC	2 cut(s)	881, 1139
Lsp1109I	GCAGC	5 cut(s)	298, 358, 895, 1067, 1249
LweI	GCATC	1 cut(s)	880
MaeI	CTAG	2 cut(s)	149, 1001
MaeII	ACGT	1 cut(s)	421
MaeIII	GTNAC	2 cut(s)	727, 829
MalI	GATC	3 cut(s)	262, 761, 1229
MboI	GATC	3 cut(s)	260, 759, 1227
MboII	GAAGA	6 cut(s)	38, 672, 989, 1111, 1180, 1296
MfeI	CAATTG	1 cut(s)	723
MlsI	TGGCCA	1 cut(s)	468
MluCI	AATT	6 cut(s)	49, 186, 482, 723, 951, 1032
MluNI	TGGCCA	1 cut(s)	468
MlyI	GAGTC	3 cut(s)	73, 972, 1089
MmeI	TCCRAC	1 cut(s)	860
Mox20I	TGGCCA	1 cut(s)	468
MroXI	GAANNNNTTC	1 cut(s)	1295
MscI	TGGCCA	1 cut(s)	468
MseI	TTAA	2 cut(s)	1085, 1315
MslI	CAYNNNNRTG	4 cut(s)	474, 605, 626, 802
Msp20I	TGGCCA	1 cut(s)	468
MspA1I	CMGCKG	4 cut(s)	37, 102, 1058, 1244
MspI	CCGG	3 cut(s)	12, 242, 347
MspR9I	CCNGG	2 cut(s)	674, 852
MunI	CAATTG	1 cut(s)	723
Mva1269I	GAATGC	2 cut(s)	274, 1295
MvaI	CCWGG	2 cut(s)	674, 852
MvnI	CGCG	2 cut(s)	140, 1013
MwoI	GCNNNNNNNGC	5 cut(s)	134, 890, 1178, 1222, 1247
NdeI	CATATG	1 cut(s)	1258
NdeII	GATC	3 cut(s)	260, 759, 1227
NlaIII	CATG	4 cut(s)	364, 431, 452, 775
NlaIV	GGNNCC	3 cut(s)	136, 345, 619
NmuCI	GTSAC	1 cut(s)	727
PctI	GAATGC	2 cut(s)	274, 1295
PdmI	GAANNNNTTC	1 cut(s)	1295
PfeI	GAWTC	5 cut(s)	58, 145, 277, 677, 994
PflMI	CCANNNNNTGG	2 cut(s)	514, 842
PkrI	GCNGC	8 cut(s)	36, 139, 313, 373, 910, 1057, 1243, 1264
PleI	GAGTC	3 cut(s)	72, 971, 1088
PpsI	GAGTC	3 cut(s)	72, 971, 1088
Ppu21I	YACGTR	1 cut(s)	422
PshAI	GACNNNNGTC	1 cut(s)	158
PsiI	TTATAA	3 cut(s)	441, 950, 1049
Psp6I	CCWGG	2 cut(s)	672, 850
PspFI	CCCAGC	1 cut(s)	686
PspGI	CCWGG	2 cut(s)	672, 850
PspN4I	GGNNCC	3 cut(s)	136, 345, 619
PspPI	GGNCC	2 cut(s)	135, 807
PvuII	CAGCTG	2 cut(s)	102, 1058
RsaI	GTAC	3 cut(s)	359, 565, 619
RsaNI	GTAC	3 cut(s)	358, 564, 618
RseI	CAYNNNNRTG	4 cut(s)	474, 605, 626, 802
SalI	GTCGAC	1 cut(s)	915
SaqAI	TTAA	2 cut(s)	1085, 1315
SatI	GCNGC	8 cut(s)	35, 138, 312, 372, 909, 1056, 1242, 1263
Sau3AI	GATC	3 cut(s)	260, 759, 1227
Sau96I	GGNCC	2 cut(s)	135, 807
ScaI	AGTACT	1 cut(s)	565
SchI	GAGTC	3 cut(s)	73, 972, 1089
ScrFI	CCNGG	2 cut(s)	674, 852
SfaNI	GCATC	1 cut(s)	880
SmiMI	CAYNNNNRTG	4 cut(s)	474, 605, 626, 802
SmlI	CTYRAG	2 cut(s)	932, 1154
SmoI	CTYRAG	2 cut(s)	932, 1154
Sse9I	AATT	6 cut(s)	49, 186, 482, 723, 951, 1032
SsiI	CCGC	4 cut(s)	35, 138, 1013, 1242
SspI	AATATT	1 cut(s)	984
SspMI	CTAG	2 cut(s)	149, 1001
StyD4I	CCNGG	2 cut(s)	672, 850
TaaI	ACNGT	1 cut(s)	460
TaiI	ACGT	1 cut(s)	424
TaqI	TCGA	5 cut(s)	250, 377, 916, 1175, 1285
TasI	AATT	6 cut(s)	49, 186, 482, 723, 951, 1032
TatI	WGTACW	2 cut(s)	357, 563
TauI	GCSGC	3 cut(s)	37, 140, 1244
TfiI	GAWTC	5 cut(s)	58, 145, 277, 677, 994
Tru1I	TTAA	2 cut(s)	1085, 1315
Tru9I	TTAA	2 cut(s)	1085, 1315
TscAI	CASTG	3 cut(s)	172, 909, 1105
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	5 cut(s)	311, 371, 908, 1055, 1262
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	3 cut(s)	295, 465, 1191
TspGWI	ACGGA	1 cut(s)	1148
TspRI	CASTG	3 cut(s)	172, 909, 1105
Van91I	CCANNNNNTGG	2 cut(s)	514, 842
XagI	CCTNNNNNAGG	1 cut(s)	971
XapI	RAATTY	1 cut(s)	482
XbaI	TCTAGA	1 cut(s)	148
XmiI	GTMKAC	3 cut(s)	335, 916, 1038
XmnI	GAANNNNTTC	1 cut(s)	1295
XspI	CTAG	2 cut(s)	149, 1001
ZrmI	AGTACT	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.