Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006088

Physical Location & Seq

Genomic Coordinates Forward (+)

36653888 .. 36656612

Gene Structure 2725 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024521

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGAGTCTCTGGATTCTCATAATGATATAGAGAAGCCACTGCTCCCCAGCGATGACTCACCGGTGCTAACCCAGAAGAGCACTCATGCCAGAGATGTGCATATTCTGAGCTCTTCTTTCTTGCTGATATTTCTGGCTTTTGGCGCCGCCCAGAATCTGGAGAGCTCTGTCAACACTGACAAGGGTTTGGGGACAACGTCGCTTGGGATTGTGTACTTGTCTTTTGCACTCTTCTCTTTGGTGGCGTCTCCGGTGGTTCGAGCTCTTGGATCAAAGACTGCTTTGATGCTTGGGACTACTGGCTACTGGTTGTTTATAGCTGTACATTTGATCAAACAAACTTGGTACATTATGTATCCAATTTCTTTATACCTCGGATTTGCCTCTTCAATAATATGGGTTGAGCAGGGGACATATCTAACTTCTGCTGCGCGTAGTCATGCAAGAGATAATAACTTACATGAAGGAACAACTATTGGCAACTTCAATGGAGAATTCTGGGGAATGTTTGCTTGTCGTCAGTTTGTCGGAAATCTTTTGTCACTTGCCATCCTAAGAGATGGAAGCGAGGGAACTACTGGTCAGACAAAGTTCTTGTATGCCTTGTTTCTCTGCAGTATGACCTTAGGGATCATACTGATGTGCTTCTTAAACAACAGGGATAATGTAGAAAAGGATTATCAAAATTCTTCTCGCAACTTCTATGCTTCTCTGATATCTTTTTTGAAGTCTGTTATCACTCCTTTGTTTGATGTACGAATGCTATTGATCATCCCCCTTATGGCATATACAGGGTTACAACAAGCATTTGTATGGGCCGAATTCACCAAGTATGTTGTTACTCCAACGCTCGGTATGTCTAGTGTGGGTGGTGCAATGGCAGTTTATGGCTTTTTTGATGCAATATGCTCACTTGTTGCTGGTCGACTCACATCTGGTCTCAAGTCCATCAGTCTTATAGTTTCTGGTGGAGCTCTCCTTCAGGCTATTGTATTCGTCTGGCTTCTTCTAAATTTCAGCCGAGCAAGCGGAGTAATTAGCATTGTAATAATGGCAGCTTTATTGGGTATTGGTGATGGAGTCTTTAACACACAGATCAGTGCTTTGCTAGGGATATTCTTCAAGCGCGATACTGAAGGAGCCTTTGCACAGCTTAAGGTGTGGCAGAGCGGTGCTGTTGCAGTCATCTTCTTTATTAGTCCGTACATATCATTAGAGGCAATGCTGGTGGTTATGCTAACTGGAGTTTGTATCGCATATGGCACCTTTGTCTACCTATTTCTTGGAGGAGAGGAAGCAGTGTCATCTTCAAGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UNC-93

Protein Analysis

440

Amino Acids

47.73

Weight (kDa)

6.31

Isoelectric Point (pI)

28.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	41 - 377	5.1e-07	Major Facilitator Superfamily
UNC-93	PF05978	63 - 420	4.7e-39	Ion channel regulatory protein UNC-93

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006088)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09470
fragaria_vesca	FvH4_6g14211 FvH4_6g14220
malus_domestica	MD04G1123300.v1.1 MD04G1123400.v1.1 MD12G1139300.v1.1
prunus_persica	Prupe.6G251000_v2.0.a1 Prupe.6G251000_v2.0.a1 Prupe.6G251100_v2.0.a1
pyrus_communis	pycom04g11130 pycom12g13360
rosa_chinensis	RchiOBHm_Chr3g0467171 RchiOBHm_Chr3g0467181
rosa_laevigata	RLG00000024521 RLG00000024522
rosa_multiflora	Rmu_sc0000962.1_g000075 Rmu_sc0000962.1_g000078
rosa_roxburghii	Rroxscaffold_6G00413840 Rroxscaffold_6G00413850
rosa_rugosa	Rorug03G0085600
rosa_samantha	Rh3AG133800 Rh3AG133900 Rh3CG154900 Rh3DG156000 Rh3DG156100
rosa_wichuraiana	Rw3G012660 Rw3G012670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	143, 1262
AccB7I	CCANNNNNTGG	1 cut(s)	157
AccBSI	CCGCTC	1 cut(s)	1170
AccI	GTMKAC	2 cut(s)	925, 1272
AccII	CGCG	2 cut(s)	433, 1128
AciI	CCGC	3 cut(s)	147, 1029, 1170
AclWI	GGATC	2 cut(s)	277, 638
AcsI	RAATTY	4 cut(s)	494, 685, 821, 1012
AcuI	CTGAAG	2 cut(s)	965, 1155
AcyI	GRCGYC	2 cut(s)	144, 245
AfaI	GTAC	5 cut(s)	215, 324, 347, 756, 1205
AfiI	CCNNNNNNNGG	3 cut(s)	157, 781, 851
AflII	CTTAAG	1 cut(s)	1154
AgeI	ACCGGT	1 cut(s)	61
AgsI	TTSAA	5 cut(s)	390, 487, 727, 1123, 1311
AluBI	AGCT	7 cut(s)	111, 165, 263, 320, 974, 1058, 1153
AluI	AGCT	7 cut(s)	111, 165, 263, 320, 974, 1058, 1153
Alw21I	GWGCWC	5 cut(s)	83, 113, 167, 265, 976
Alw26I	GTCTC	3 cut(s)	12, 252, 944
AlwI	GGATC	2 cut(s)	277, 638
AlwNI	CAGNNNCTG	1 cut(s)	157
AoxI	GGCC	1 cut(s)	816
ApeKI	GCWGC	2 cut(s)	428, 1055
ApoI	RAATTY	4 cut(s)	494, 685, 821, 1012
AsiGI	ACCGGT	1 cut(s)	61
AspLEI	GCGC	3 cut(s)	146, 433, 1128
AspS9I	GGNCC	1 cut(s)	816
AsuHPI	GGTGA	3 cut(s)	51, 817, 1085
AxyI	CCTNAGG	1 cut(s)	625
BanI	GGYRCC	2 cut(s)	143, 1262
BanII	GRGCYC	4 cut(s)	113, 167, 265, 976
Bbv12I	GWGCWC	5 cut(s)	83, 113, 167, 265, 976
BbvI	GCAGC	2 cut(s)	415, 1067
BccI	CCATC	4 cut(s)	554, 557, 956, 1070
BciVI	GTATCC	1 cut(s)	366
BclI	TGATCA	2 cut(s)	330, 768
BcoDI	GTCTC	3 cut(s)	12, 252, 944
BfaI	CTAG	2 cut(s)	861, 1109
BfmI	CTRYAG	1 cut(s)	613
BfoI	RGCGCY	1 cut(s)	147
BfrI	CTTAAG	1 cut(s)	1154
BfuI	GTATCC	1 cut(s)	366
BisI	GCNGC	3 cut(s)	147, 429, 1056
BlsI	GCNGC	3 cut(s)	148, 430, 1057
BmgT120I	GGNCC	1 cut(s)	816
BmiI	GGNNCC	3 cut(s)	145, 1141, 1264
BmsI	GCATC	2 cut(s)	276, 889
BpmI	CTGGAG	2 cut(s)	179, 1263
BpuEI	CTTGAG	1 cut(s)	926
BsaHI	GRCGYC	2 cut(s)	144, 245
BsaI	GGTCTC	1 cut(s)	944
BsaJI	CCNNGG	1 cut(s)	373
BsaWI	WCCGGW	2 cut(s)	61, 250
Bsc4I	CCNNNNNNNGG	3 cut(s)	157, 781, 851
Bse118I	RCCGGY	1 cut(s)	61
Bse1I	ACTGG	4 cut(s)	304, 311, 583, 1246
Bse21I	CCTNAGG	1 cut(s)	625
Bse3DI	GCAATG	2 cut(s)	882, 1227
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	2 cut(s)	549, 771
BseLI	CCNNNNNNNGG	3 cut(s)	157, 781, 851
BseMI	GCAATG	2 cut(s)	882, 1227
BseMII	CTCAG	1 cut(s)	98
BseNI	ACTGG	4 cut(s)	304, 311, 583, 1246
BseRI	GAGGAG	1 cut(s)	1302
BseXI	GCAGC	2 cut(s)	415, 1067
BseYI	CCCAGC	1 cut(s)	47
Bsh1236I	CGCG	2 cut(s)	433, 1128
BshFI	GGCC	1 cut(s)	818
BshNI	GGYRCC	2 cut(s)	143, 1262
BshTI	ACCGGT	1 cut(s)	61
BsiHKAI	GWGCWC	5 cut(s)	83, 113, 167, 265, 976
BsiSI	CCGG	2 cut(s)	62, 251
BslFI	GGGAC	3 cut(s)	205, 307, 424
BslI	CCNNNNNNNGG	3 cut(s)	157, 781, 851
BsmAI	GTCTC	3 cut(s)	12, 252, 944
BsmBI	CGTCTC	1 cut(s)	252
BsmFI	GGGAC	3 cut(s)	205, 307, 424
BsmI	GAATGC	1 cut(s)	765
BsnI	GGCC	1 cut(s)	818
Bso31I	GGTCTC	1 cut(s)	944
Bsp1286I	GDGCHC	5 cut(s)	83, 113, 167, 265, 976
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	269, 330, 630, 768, 1095
BspACI	CCGC	3 cut(s)	147, 1029, 1170
BspANI	GGCC	1 cut(s)	818
BspCNI	CTCAG	1 cut(s)	99
BspFNI	CGCG	2 cut(s)	433, 1128
BspLI	GGNNCC	3 cut(s)	145, 1141, 1264
BspMAI	CTGCAG	1 cut(s)	617
BspPI	GGATC	2 cut(s)	277, 638
BspQI	GCTCTTC	2 cut(s)	71, 118
BspT107I	GGYRCC	2 cut(s)	143, 1262
BspTI	CTTAAG	1 cut(s)	1154
BspTNI	GGTCTC	1 cut(s)	944
BsrBI	CCGCTC	1 cut(s)	1170
BsrDI	GCAATG	2 cut(s)	882, 1227
BsrFI	RCCGGY	1 cut(s)	61
BsrGI	TGTACA	1 cut(s)	322
BsrI	ACTGG	4 cut(s)	304, 311, 583, 1246
BssAI	RCCGGY	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	5 cut(s)	269, 330, 630, 768, 1095
BssNI	GRCGYC	2 cut(s)	144, 245
Bst6I	CTCTTC	4 cut(s)	71, 118, 236, 391
BstACI	GRCGYC	2 cut(s)	144, 245
BstAFI	CTTAAG	1 cut(s)	1154
BstAUI	TGTACA	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	1027
BstDEI	CTNAG	3 cut(s)	107, 554, 625
BstF5I	GGATG	2 cut(s)	549, 771
BstFNI	CGCG	2 cut(s)	433, 1128
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	3 cut(s)	146, 433, 1128
BstKTI	GATC	5 cut(s)	272, 333, 633, 771, 1098
BstMAI	GTCTC	3 cut(s)	12, 252, 944
BstMBI	GATC	5 cut(s)	269, 330, 630, 768, 1095
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 1026
BstSFI	CTRYAG	1 cut(s)	613
BstUI	CGCG	2 cut(s)	433, 1128
BstV1I	GCAGC	2 cut(s)	415, 1067
Bsu36I	CCTNAGG	1 cut(s)	625
BsuI	GTATCC	1 cut(s)	366
BsuRI	GGCC	1 cut(s)	818
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	549, 771
BtsI	GCAGTG	2 cut(s)	38, 1305
BtsIMutI	CAGTG	4 cut(s)	38, 174, 1105, 1305
Cac8I	GCNNGC	1 cut(s)	1027
CaiI	CAGNNNCTG	1 cut(s)	157
CfoI	GCGC	3 cut(s)	146, 433, 1128
Cfr10I	RCCGGY	1 cut(s)	61
Cfr13I	GGNCC	1 cut(s)	816
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	5 cut(s)	214, 323, 346, 755, 1204
CspAI	ACCGGT	1 cut(s)	61
CspCI	CAANNNNNGTGG	2 cut(s)	1209, 1244
CviAII	CATG	3 cut(s)	86, 440, 461
CviQI	GTAC	5 cut(s)	214, 323, 346, 755, 1204
DdeI	CTNAG	3 cut(s)	107, 554, 625
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	5 cut(s)	271, 332, 632, 770, 1097
DpnII	GATC	5 cut(s)	269, 330, 630, 768, 1095
Eam1104I	CTCTTC	4 cut(s)	71, 118, 236, 391
EarI	CTCTTC	4 cut(s)	71, 118, 236, 391
Ecl136II	GAGCTC	4 cut(s)	111, 165, 263, 974
Eco24I	GRGCYC	4 cut(s)	113, 167, 265, 976
Eco31I	GGTCTC	1 cut(s)	944
Eco32I	GATATC	1 cut(s)	717
Eco53kI	GAGCTC	4 cut(s)	111, 165, 263, 974
Eco57I	CTGAAG	2 cut(s)	965, 1155
Eco81I	CCTNAGG	1 cut(s)	625
EcoICRI	GAGCTC	4 cut(s)	111, 165, 263, 974
EcoRI	GAATTC	2 cut(s)	494, 821
EcoRV	GATATC	1 cut(s)	717
EcoT38I	GRGCYC	4 cut(s)	113, 167, 265, 976
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
Esp3I	CGTCTC	1 cut(s)	252
FaeI	CATG	3 cut(s)	89, 443, 464
FaqI	GGGAC	3 cut(s)	205, 307, 424
FatI	CATG	3 cut(s)	85, 439, 460
FauNDI	CATATG	1 cut(s)	1258
FbaI	TGATCA	2 cut(s)	330, 768
FblI	GTMKAC	2 cut(s)	925, 1272
Fnu4HI	GCNGC	3 cut(s)	147, 429, 1056
FokI	GGATG	2 cut(s)	536, 758
FriOI	GRGCYC	4 cut(s)	113, 167, 265, 976
Fsp4HI	GCNGC	3 cut(s)	147, 429, 1056
FspBI	CTAG	2 cut(s)	861, 1109
GlaI	GCGC	3 cut(s)	145, 432, 1127
GluI	GCNGC	3 cut(s)	147, 429, 1056
GsaI	CCCAGC	1 cut(s)	51
GsuI	CTGGAG	2 cut(s)	179, 1263
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	818
HapII	CCGG	2 cut(s)	62, 251
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	3 cut(s)	146, 433, 1128
Hin1I	GRCGYC	2 cut(s)	144, 245
Hin1II	CATG	3 cut(s)	89, 443, 464
Hin6I	GCGC	3 cut(s)	144, 431, 1126
HinP1I	GCGC	3 cut(s)	144, 431, 1126
HincII	GTYRAC	2 cut(s)	172, 926
HindII	GTYRAC	2 cut(s)	172, 926
HinfI	GANTC	6 cut(s)	5, 14, 56, 154, 927, 1080
HpaII	CCGG	2 cut(s)	62, 251
HphI	GGTGA	3 cut(s)	51, 817, 1085
Hpy166II	GTNNAC	4 cut(s)	172, 214, 926, 1273
Hpy188I	TCNGA	5 cut(s)	108, 377, 530, 585, 714
Hpy188III	TCNNGA	2 cut(s)	11, 158
Hpy8I	GTNNAC	4 cut(s)	172, 214, 926, 1273
Hpy99I	CGWCG	1 cut(s)	202
HpyAV	CCTTC	3 cut(s)	458, 989, 1130
HpyCH4IV	ACGT	1 cut(s)	197
HpyCH4V	TGCA	8 cut(s)	100, 227, 443, 615, 875, 902, 1148, 1181
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 1026
HpyF3I	CTNAG	3 cut(s)	107, 554, 625
HpySE526I	ACGT	1 cut(s)	197
Hsp92I	GRCGYC	2 cut(s)	144, 245
Hsp92II	CATG	3 cut(s)	89, 443, 464
HspAI	GCGC	3 cut(s)	144, 431, 1126
KasI	GGCGCC	1 cut(s)	143
Ksp22I	TGATCA	2 cut(s)	330, 768
Kzo9I	GATC	5 cut(s)	269, 330, 630, 768, 1095
LguI	GCTCTTC	2 cut(s)	71, 118
LmnI	GCTCC	3 cut(s)	48, 971, 1139
Lsp1109I	GCAGC	2 cut(s)	415, 1067
LweI	GCATC	2 cut(s)	276, 889
MaeI	CTAG	2 cut(s)	861, 1109
MaeII	ACGT	1 cut(s)	197
MaeIII	GTNAC	3 cut(s)	540, 795, 838
MalI	GATC	5 cut(s)	271, 332, 632, 770, 1097
MbiI	CCGCTC	1 cut(s)	1170
MboI	GATC	5 cut(s)	269, 330, 630, 768, 1095
MboII	GAAGA	9 cut(s)	88, 105, 223, 378, 681, 998, 1111, 1180, 1299
MhlI	GDGCHC	5 cut(s)	83, 113, 167, 265, 976
MluCI	AATT	6 cut(s)	360, 494, 685, 821, 1012, 1035
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	4 cut(s)	14, 50, 921, 1089
MmeI	TCCRAC	2 cut(s)	508, 869
MnlI	CCTC	6 cut(s)	383, 394, 562, 1210, 1280, 1285
MseI	TTAA	3 cut(s)	650, 1086, 1155
MslI	CAYNNNNRTG	2 cut(s)	638, 811
MspCI	CTTAAG	1 cut(s)	1154
MspI	CCGG	2 cut(s)	62, 251
Mva1269I	GAATGC	1 cut(s)	765
MvnI	CGCG	2 cut(s)	433, 1128
MwoI	GCNNNNNNNGC	2 cut(s)	143, 1026
NarI	GGCGCC	1 cut(s)	144
NdeI	CATATG	1 cut(s)	1258
NdeII	GATC	5 cut(s)	269, 330, 630, 768, 1095
NlaIII	CATG	3 cut(s)	89, 443, 464
NlaIV	GGNNCC	3 cut(s)	145, 1141, 1264
NmeAIII	GCCGAG	1 cut(s)	1046
NmuCI	GTSAC	1 cut(s)	540
PciSI	GCTCTTC	2 cut(s)	71, 118
PctI	GAATGC	1 cut(s)	765
PfeI	GAWTC	2 cut(s)	14, 154
PflFI	GACNNNGTC	1 cut(s)	196
PflMI	CCANNNNNTGG	1 cut(s)	157
PinAI	ACCGGT	1 cut(s)	61
PkrI	GCNGC	3 cut(s)	148, 430, 1057
PleI	GAGTC	4 cut(s)	13, 50, 921, 1088
PluTI	GGCGCC	1 cut(s)	147
PpsI	GAGTC	4 cut(s)	13, 50, 921, 1088
Psp124BI	GAGCTC	4 cut(s)	113, 167, 265, 976
PspFI	CCCAGC	1 cut(s)	47
PspN4I	GGNNCC	3 cut(s)	145, 1141, 1264
PspPI	GGNCC	1 cut(s)	816
PstI	CTGCAG	1 cut(s)	617
PstNI	CAGNNNCTG	1 cut(s)	157
PsyI	GACNNNGTC	1 cut(s)	196
RsaI	GTAC	5 cut(s)	215, 324, 347, 756, 1205
RsaNI	GTAC	5 cut(s)	214, 323, 346, 755, 1204
RseI	CAYNNNNRTG	2 cut(s)	638, 811
SacI	GAGCTC	4 cut(s)	113, 167, 265, 976
SalI	GTCGAC	1 cut(s)	924
SapI	GCTCTTC	2 cut(s)	71, 118
SaqAI	TTAA	3 cut(s)	650, 1086, 1155
SatI	GCNGC	3 cut(s)	147, 429, 1056
Sau3AI	GATC	5 cut(s)	269, 330, 630, 768, 1095
Sau96I	GGNCC	1 cut(s)	816
SchI	GAGTC	4 cut(s)	14, 50, 921, 1089
SduI	GDGCHC	5 cut(s)	83, 113, 167, 265, 976
SfaNI	GCATC	2 cut(s)	276, 889
SfcI	CTRYAG	1 cut(s)	613
SfoI	GGCGCC	1 cut(s)	145
SgrAI	CRCCGGYG	1 cut(s)	61
SmiMI	CAYNNNNRTG	2 cut(s)	638, 811
SmlI	CTYRAG	2 cut(s)	941, 1154
SmoI	CTYRAG	2 cut(s)	941, 1154
Sse9I	AATT	6 cut(s)	360, 494, 685, 821, 1012, 1035
SsiI	CCGC	3 cut(s)	147, 1029, 1170
SspDI	GGCGCC	1 cut(s)	143
SspMI	CTAG	2 cut(s)	861, 1109
SstI	GAGCTC	4 cut(s)	113, 167, 265, 976
TaiI	ACGT	1 cut(s)	200
TaqI	TCGA	2 cut(s)	259, 925
TasI	AATT	6 cut(s)	360, 494, 685, 821, 1012, 1035
TatI	WGTACW	2 cut(s)	213, 322
TauI	GCSGC	1 cut(s)	149
TfiI	GAWTC	2 cut(s)	14, 154
Tru1I	TTAA	3 cut(s)	650, 1086, 1155
Tru9I	TTAA	3 cut(s)	650, 1086, 1155
TscAI	CASTG	4 cut(s)	45, 181, 1105, 1305
TseFI	GTSAC	1 cut(s)	540
TseI	GCWGC	2 cut(s)	428, 1055
Tsp45I	GTSAC	1 cut(s)	540
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	1 cut(s)	1191
TspRI	CASTG	4 cut(s)	45, 181, 1105, 1305
Tth111I	GACNNNGTC	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	157
Vha464I	CTTAAG	1 cut(s)	1154
XapI	RAATTY	4 cut(s)	494, 685, 821, 1012
XmiI	GTMKAC	2 cut(s)	925, 1272
XspI	CTAG	2 cut(s)	861, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.