Rorug03G0085600

UNC93-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006088
Physical Location & Seq
Reverse (-)
6620091 .. 6623772
3682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0085600.1

Sequence Viewer

Length: 1086 bp
ATGTATGGGTGCGACCCAGGTACAGTCGGGCGAGGATCCAAGTCCGTCCAATTTTACTATAATAACCCGTTTCATAGACCAAACCGCAGATTACGAGATCGGAAGCAGCTTTGGGTTTCTCTCTCTCTCTCTCTAGCTCGCAAATTCAACTCCACCAGGCAAGACATGTCCAACCGGTGGTATAACAGTAGACAGGAAACAAGCACCCGAGACAAACAGCAACATGAGAAGGAGCAGGCATATCAGGAGTCACTTCTTGATGATTTTGCAGAGGAATTTAGACTTCCTATTAATCAAAGGCCAACAGAAAATGTTGATCTGGAACATGTGGAACAAGCGTCATTGGACAGACAGTTACCATCATCTAACATTGGTTTTCGGCTTCTCCAGAAAATGGGGTGGAAGGGGAAGGGGCTCGGTAAAGATGAACAAGGAATTGTTGAGCCAATAAAATCTGGGATTAGAGACCCAAAACTAGGAGTTGGAAAACAAGAAGAAGATGATTATTTTACAGCAGAAGAAAATATTCAAAGAAGAAAACTTGATGTTGAGATGGAAGAGACTGAGGAACATGCAAAGAAGCGGGAGGTTTTAGCAGAACGTGAGCAGAAAATTCAAACTGAGGTGAAAGAAATACGCAAGGTGTTCTACTGTGACCTGTGCAACAAACAATACAAATTGGCTGTGGAATTTGAAGCTCACTTGAGCTCCTATGATCATAATCACAGGAAGCGTTTTAAAGAAATGAAAGAAATGCATGGTACAAGTAGTCGGGATGATCGTCAAAAACGGGAGCAGCAGCGCCAGGAGAGGGAAATGGCAAAGTTTGCTCAGATGAGTGCCGATGCCCGTAAGCAGCAGCAGCAGCTACAACAACAGCAAGAAGAATCTGCATCAGCCCCGGGTTCTGCTGAACTGAGAAGTGCTACTGCACTTGCAGATCAAGATCAAAGGAAGGCCCTGAAATTTGGGTTTTCTTCTAAAGGTGGCACCTCTAAGACCTCGTTTGGTAGTGCTTCAAAGAAGCCAAAAGTAGCAAAAGTAGCTGTGGCCTCAGTATTTGGCAATGATAGTGATGAAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UNC-93

Protein Analysis

361

Amino Acids

41.87

Weight (kDa)

8.96

Isoelectric Point (pI)

60.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-patch PF01585 122 - 162 6e-16 G-patch domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 989
AccB7I CCANNNNNTGG 2 cut(s) 177, 394
AccI GTMKAC 1 cut(s) 190
AciI CCGC 2 cut(s) 85, 583
AclWI GGATC 2 cut(s) 30, 43
AcsI RAATTY 5 cut(s) 143, 275, 612, 689, 965
AfaI GTAC 2 cut(s) 22, 763
AfiI CCNNNNNNNGG 4 cut(s) 177, 394, 476, 811
AflIII ACRYGT 2 cut(s) 165, 325
AgeI ACCGGT 1 cut(s) 174
AgsI TTSAA 5 cut(s) 148, 530, 617, 695, 1020
AjnI CCWGG 3 cut(s) 16, 155, 804
AluBI AGCT 6 cut(s) 109, 137, 698, 708, 868, 1046
AluI AGCT 6 cut(s) 109, 137, 698, 708, 868, 1046
Alw21I GWGCWC 1 cut(s) 710
Alw26I GTCTC 3 cut(s) 204, 459, 554
AlwI GGATC 2 cut(s) 30, 43
Ama87I CYCGRG 2 cut(s) 207, 901
AoxI GGCC 3 cut(s) 299, 957, 1050
ApeKI GCWGC 7 cut(s) 106, 796, 799, 856, 859, 862, 865
ApoI RAATTY 5 cut(s) 143, 275, 612, 689, 965
AseI ATTAAT 1 cut(s) 291
AsiGI ACCGGT 1 cut(s) 174
Asp700I GAANNNNTTC 1 cut(s) 525
AspLEI GCGC 1 cut(s) 804
AspS9I GGNCC 1 cut(s) 958
AsuC2I CCSGG 2 cut(s) 902, 903
AsuHPI GGTGA 1 cut(s) 637
AvaI CYCGRG 2 cut(s) 207, 901
BamHI GGATCC 1 cut(s) 35
BanI GGYRCC 1 cut(s) 989
BanII GRGCYC 2 cut(s) 417, 710
Bbv12I GWGCWC 1 cut(s) 710
BbvI GCAGC 7 cut(s) 118, 808, 811, 868, 871, 874, 877
BccI CCATC 2 cut(s) 367, 547
BciT130I CCWGG 3 cut(s) 18, 157, 806
BclI TGATCA 1 cut(s) 715
BcnI CCSGG 2 cut(s) 902, 903
BcoDI GTCTC 3 cut(s) 204, 459, 554
BfaI CTAG 2 cut(s) 134, 476
BfoI RGCGCY 1 cut(s) 805
BisI GCNGC 7 cut(s) 107, 797, 800, 857, 860, 863, 866
BlsI GCNGC 7 cut(s) 108, 798, 801, 858, 861, 864, 867
Bme1390I CCNGG 5 cut(s) 18, 157, 806, 902, 903
BmeT110I CYCGRG 2 cut(s) 207, 901
BmgT120I GGNCC 1 cut(s) 958
BmiI GGNNCC 2 cut(s) 37, 991
BmrFI CCNGG 5 cut(s) 18, 157, 806, 902, 903
BmsI GCATC 2 cut(s) 835, 902
BpmI CTGGAG 1 cut(s) 371
BpuEI CTTGAG 1 cut(s) 724
BpuMI CCSGG 2 cut(s) 902, 903
BsaBI GATNNNNATC 2 cut(s) 720, 945
BsaI GGTCTC 1 cut(s) 459
BsaJI CCNNGG 3 cut(s) 16, 900, 901
BsaWI WCCGGW 1 cut(s) 174
BsaXI ACNNNNNCTCC 2 cut(s) 692, 722
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 394, 476, 811
Bse118I RCCGGY 1 cut(s) 174
Bse3DI GCAATG 1 cut(s) 1072
Bse8I GATNNNNATC 2 cut(s) 720, 945
BseBI CCWGG 3 cut(s) 18, 157, 806
BseDI CCNNGG 3 cut(s) 16, 900, 901
BseGI GGATG 1 cut(s) 781
BseJI GATNNNNATC 2 cut(s) 720, 945
BseLI CCNNNNNNNGG 4 cut(s) 177, 394, 476, 811
BseMI GCAATG 1 cut(s) 1072
BseMII CTCAG 5 cut(s) 555, 612, 845, 908, 1068
BseXI GCAGC 7 cut(s) 118, 808, 811, 868, 871, 874, 877
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 3 cut(s) 301, 959, 1052
BshNI GGYRCC 1 cut(s) 989
BshTI ACCGGT 1 cut(s) 174
BsiHKAI GWGCWC 1 cut(s) 710
BsiHKCI CYCGRG 2 cut(s) 207, 901
BsiSI CCGG 2 cut(s) 175, 902
BslI CCNNNNNNNGG 4 cut(s) 177, 394, 476, 811
BsmAI GTCTC 3 cut(s) 204, 459, 554
BsnI GGCC 3 cut(s) 301, 959, 1052
Bso31I GGTCTC 1 cut(s) 459
BsoBI CYCGRG 2 cut(s) 207, 901
Bsp1286I GDGCHC 2 cut(s) 417, 710
Bsp143I GATC 7 cut(s) 35, 97, 316, 715, 778, 940, 946
BspACI CCGC 2 cut(s) 85, 583
BspANI GGCC 3 cut(s) 301, 959, 1052
BspCNI CTCAG 5 cut(s) 556, 613, 844, 909, 1067
BspLI GGNNCC 2 cut(s) 37, 991
BspPI GGATC 2 cut(s) 30, 43
BspT107I GGYRCC 1 cut(s) 989
BspTNI GGTCTC 1 cut(s) 459
BsrDI GCAATG 1 cut(s) 1072
BsrFI RCCGGY 1 cut(s) 174
BssAI RCCGGY 1 cut(s) 174
BssECI CCNNGG 3 cut(s) 16, 900, 901
BssMI GATC 7 cut(s) 35, 97, 316, 715, 778, 940, 946
Bst2UI CCWGG 3 cut(s) 18, 157, 806
Bst4CI ACNGT 4 cut(s) 25, 188, 354, 653
Bst6I CTCTTC 1 cut(s) 552
BstAPI GCANNNNNTGC 1 cut(s) 827
BstC8I GCNNGC 2 cut(s) 139, 237
BstDEI CTNAG 6 cut(s) 564, 621, 831, 917, 996, 1054
BstF5I GGATG 1 cut(s) 781
BstH2I RGCGCY 1 cut(s) 805
BstHHI GCGC 1 cut(s) 804
BstKTI GATC 7 cut(s) 38, 100, 319, 718, 781, 943, 949
BstMAI GTCTC 3 cut(s) 204, 459, 554
BstMBI GATC 7 cut(s) 35, 97, 316, 715, 778, 940, 946
BstMWI GCNNNNNNNGC 4 cut(s) 827, 862, 865, 1043
BstNI CCWGG 3 cut(s) 18, 157, 806
BstNSI RCATGY 3 cut(s) 169, 329, 575
BstSCI CCNGG 5 cut(s) 16, 155, 804, 900, 901
BstV1I GCAGC 7 cut(s) 118, 808, 811, 868, 871, 874, 877
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 3 cut(s) 301, 959, 1052
BtsCI GGATG 1 cut(s) 781
Cac8I GCNNGC 2 cut(s) 139, 237
CfoI GCGC 1 cut(s) 804
Cfr10I RCCGGY 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 958
Cfr9I CCCGGG 1 cut(s) 901
CseI GACGC 1 cut(s) 327
Csp6I GTAC 2 cut(s) 21, 762
CspAI ACCGGT 1 cut(s) 174
CviAII CATG 5 cut(s) 166, 224, 326, 572, 758
CviQI GTAC 2 cut(s) 21, 762
DdeI CTNAG 6 cut(s) 564, 621, 831, 917, 996, 1054
DpnI GATC 7 cut(s) 37, 99, 318, 717, 780, 942, 948
DpnII GATC 7 cut(s) 35, 97, 316, 715, 778, 940, 946
DraI TTTAAA 1 cut(s) 739
Eam1104I CTCTTC 1 cut(s) 552
EarI CTCTTC 1 cut(s) 552
Ecl136II GAGCTC 1 cut(s) 708
Eco24I GRGCYC 2 cut(s) 417, 710
Eco31I GGTCTC 1 cut(s) 459
Eco53kI GAGCTC 1 cut(s) 708
Eco88I CYCGRG 2 cut(s) 207, 901
EcoICRI GAGCTC 1 cut(s) 708
EcoO109I RGGNCCY 1 cut(s) 958
EcoRII CCWGG 3 cut(s) 16, 155, 804
EcoT22I ATGCAT 1 cut(s) 759
EcoT38I GRGCYC 2 cut(s) 417, 710
FaeI CATG 5 cut(s) 169, 227, 329, 575, 761
FatI CATG 5 cut(s) 165, 223, 325, 571, 757
FauI CCCGC 1 cut(s) 576
FbaI TGATCA 1 cut(s) 715
FblI GTMKAC 1 cut(s) 190
Fnu4HI GCNGC 7 cut(s) 107, 797, 800, 857, 860, 863, 866
FokI GGATG 1 cut(s) 788
FriOI GRGCYC 2 cut(s) 417, 710
Fsp4HI GCNGC 7 cut(s) 107, 797, 800, 857, 860, 863, 866
FspBI CTAG 2 cut(s) 134, 476
GlaI GCGC 1 cut(s) 803
GluI GCNGC 7 cut(s) 107, 797, 800, 857, 860, 863, 866
GsuI CTGGAG 1 cut(s) 371
HaeII RGCGCY 1 cut(s) 805
HaeIII GGCC 3 cut(s) 301, 959, 1052
HapII CCGG 2 cut(s) 175, 902
HgaI GACGC 1 cut(s) 327
HhaI GCGC 1 cut(s) 804
Hin1II CATG 5 cut(s) 169, 227, 329, 575, 761
Hin6I GCGC 1 cut(s) 802
HinP1I GCGC 1 cut(s) 802
HinfI GANTC 2 cut(s) 248, 887
HpaII CCGG 2 cut(s) 175, 902
HphI GGTGA 1 cut(s) 637
Hpy166II GTNNAC 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 102, 834
Hpy188III TCNNGA 6 cut(s) 245, 257, 320, 388, 773, 944
Hpy8I GTNNAC 1 cut(s) 191
HpyAV CCTTC 4 cut(s) 223, 397, 403, 949
HpyCH4III ACNGT 4 cut(s) 25, 188, 354, 653
HpyCH4IV ACGT 1 cut(s) 601
HpyCH4V TGCA 7 cut(s) 269, 575, 663, 757, 893, 932, 938
HpyF10VI GCNNNNNNNGC 4 cut(s) 827, 862, 865, 1043
HpyF3I CTNAG 6 cut(s) 564, 621, 831, 917, 996, 1054
HpySE526I ACGT 1 cut(s) 601
Hsp92II CATG 5 cut(s) 169, 227, 329, 575, 761
HspAI GCGC 1 cut(s) 802
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 7 cut(s) 35, 97, 316, 715, 778, 940, 946
LmnI GCTCC 3 cut(s) 232, 713, 793
Lsp1109I GCAGC 7 cut(s) 118, 808, 811, 868, 871, 874, 877
LweI GCATC 2 cut(s) 835, 902
MaeI CTAG 2 cut(s) 134, 476
MaeII ACGT 1 cut(s) 601
MaeIII GTNAC 3 cut(s) 249, 354, 653
MalI GATC 7 cut(s) 37, 99, 318, 717, 780, 942, 948
MboI GATC 7 cut(s) 35, 97, 316, 715, 778, 940, 946
MboII GAAGA 7 cut(s) 506, 509, 530, 546, 569, 896, 969
MflI RGATCY 1 cut(s) 35
MhlI GDGCHC 2 cut(s) 417, 710
MluCI AATT 8 cut(s) 50, 143, 275, 435, 612, 677, 689, 965
MlyI GAGTC 1 cut(s) 257
MmeI TCCRAC 2 cut(s) 195, 463
MnlI CCTC 9 cut(s) 26, 265, 559, 580, 616, 804, 1003, 1012, 1063
Mph1103I ATGCAT 1 cut(s) 759
MroXI GAANNNNTTC 1 cut(s) 525
MseI TTAA 2 cut(s) 291, 738
MspI CCGG 2 cut(s) 175, 902
MspR9I CCNGG 5 cut(s) 18, 157, 806, 902, 903
MvaI CCWGG 3 cut(s) 18, 157, 806
MwoI GCNNNNNNNGC 4 cut(s) 827, 862, 865, 1043
NciI CCSGG 2 cut(s) 902, 903
NdeII GATC 7 cut(s) 35, 97, 316, 715, 778, 940, 946
NlaIII CATG 5 cut(s) 169, 227, 329, 575, 761
NlaIV GGNNCC 2 cut(s) 37, 991
NmuCI GTSAC 2 cut(s) 249, 653
NsiI ATGCAT 1 cut(s) 759
NspI RCATGY 3 cut(s) 169, 329, 575
PciI ACATGT 2 cut(s) 165, 325
PcsI WCGNNNNNNNCGW 1 cut(s) 778
PdmI GAANNNNTTC 1 cut(s) 525
PfeI GAWTC 1 cut(s) 887
PflMI CCANNNNNTGG 2 cut(s) 177, 394
PinAI ACCGGT 1 cut(s) 174
PkrI GCNGC 7 cut(s) 108, 798, 801, 858, 861, 864, 867
PleI GAGTC 1 cut(s) 256
PpsI GAGTC 1 cut(s) 256
PscI ACATGT 2 cut(s) 165, 325
PshBI ATTAAT 1 cut(s) 291
Psp124BI GAGCTC 1 cut(s) 710
Psp6I CCWGG 3 cut(s) 16, 155, 804
PspGI CCWGG 3 cut(s) 16, 155, 804
PspN4I GGNNCC 2 cut(s) 37, 991
PspPI GGNCC 1 cut(s) 958
PsuI RGATCY 1 cut(s) 35
RsaI GTAC 2 cut(s) 22, 763
RsaNI GTAC 2 cut(s) 21, 762
SacI GAGCTC 1 cut(s) 710
SaqAI TTAA 2 cut(s) 291, 738
SatI GCNGC 7 cut(s) 107, 797, 800, 857, 860, 863, 866
Sau3AI GATC 7 cut(s) 35, 97, 316, 715, 778, 940, 946
Sau96I GGNCC 1 cut(s) 958
SchI GAGTC 1 cut(s) 257
ScrFI CCNGG 5 cut(s) 18, 157, 806, 902, 903
SduI GDGCHC 2 cut(s) 417, 710
SfaNI GCATC 2 cut(s) 835, 902
SmaI CCCGGG 1 cut(s) 903
SmlI CTYRAG 1 cut(s) 703
SmoI CTYRAG 1 cut(s) 703
Sse9I AATT 8 cut(s) 50, 143, 275, 435, 612, 677, 689, 965
SsiI CCGC 2 cut(s) 85, 583
SspI AATATT 1 cut(s) 526
SspMI CTAG 2 cut(s) 134, 476
SstI GAGCTC 1 cut(s) 710
StyD4I CCNGG 5 cut(s) 16, 155, 804, 900, 901
TaaI ACNGT 4 cut(s) 25, 188, 354, 653
TaiI ACGT 1 cut(s) 604
TasI AATT 8 cut(s) 50, 143, 275, 435, 612, 677, 689, 965
TfiI GAWTC 1 cut(s) 887
Tru1I TTAA 2 cut(s) 291, 738
Tru9I TTAA 2 cut(s) 291, 738
TseFI GTSAC 2 cut(s) 249, 653
TseI GCWGC 7 cut(s) 106, 796, 799, 856, 859, 862, 865
Tsp45I GTSAC 2 cut(s) 249, 653
TspDTI ATGAA 3 cut(s) 62, 441, 761
TspGWI ACGGA 1 cut(s) 34
TspMI CCCGGG 1 cut(s) 901
Van91I CCANNNNNTGG 2 cut(s) 177, 394
VspI ATTAAT 1 cut(s) 291
XapI RAATTY 5 cut(s) 143, 275, 612, 689, 965
XceI RCATGY 3 cut(s) 169, 329, 575
XmaI CCCGGG 1 cut(s) 901
XmiI GTMKAC 1 cut(s) 190
XmnI GAANNNNTTC 1 cut(s) 525
XspI CTAG 2 cut(s) 134, 476
Zsp2I ATGCAT 1 cut(s) 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.