Rroxscaffold_6G00413840

UNC93-like protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
36162696 .. 36165602
2907 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413840.1

Sequence Viewer

Length: 1311 bp
ATGGATTCTCATAATGATATAGAGAAGCCATTGCTCCCCGGAGATGACTCGCCGGTGCTAACCCAGAAGAGCACTCATGCCAGAGGTGTGCACATTCTGAGCTTTTCTTTCTTGCTGATATTTCTGGCTTTTGGCGCCGCCCAGAATCTGGAGAGCTCTGTCAACACTGACACGAGTTTGGGGACAACGTCGCTTGGGATTGTGTACTTGTCTTTTGCACTCTTCTCTTTGGTGGCGTCTCCAGTGGTTCGAGCTCTTGGATCAAAGACTGCTTTGATGCTTGGGACTACTGGCTACTGGTTGTTTATAGCTGTACATTTGATCAAACAAACTTGGTACATTATGTATCCAATTTCTTTATACCTCGGATTTGCCTCTTCAATAATATGGGTTGAGCAGGGGACATATCTAACTTCTGCTGCGCGTAGTCATGCAAGAGATAATAACTTACATGAAGGAACAACTATTGGCAACTTCAATGGAGAATTCTGGGGAATGTTTGCTTGTCGTCAGTTTGTCGGAAATCTCTTGTCACTTGCCATCCTAAGAGATGGAAGCGAGGGAACTCCTGGTCAGACAAAGTTCTTGTACGCCATGTTTCTCTGCAGTATGACCTTAGGGATCATACTGATGTGCTTCTTAAACAACAGGGATAATGTAGAAAAGGATTATCAAAATTCTTCTCGCAACTTCTATGCTTCTCTGATATCTTTTCTGAAGTCTGTTATCACTCCTTTGTTCGATGTACGAATGCTATTGATCATCCCCCTTATGGCGTATACAGGGTTACAACAAGCATTTGTATGGGCCGAATTCACCAAGTATGTTGTTACTCCAACACTCGGTATGTCTGGTGTGGGTGGTGCAATGGCAGTTTATGGCTTTTTTGATGCAATATGCTCACTCGTTGCTGGTCGACTCACATCTGGTCTCAAGTCCATCAGTCTTATAGTTTCTGGTGGAGCTCTCCTTCAGGCTATTGTATTCGTCTGGCTTCTTCTAAATTTCAGCCGAGCAAGCGGAGTAATTAGCATTGCAATAATGGCAGCTTTATTGGGTATTGGTGATGGAGTCTTTAACACACAGATCAGTGCTTTGCTAGGGATATTCTTCAAGCGCGATACTGAAGGAGCCTTTGCACAGCTCAAGGTGTGGCAGAGCGGTGCTGTTGCAGTCATCTTCTTTATTAGTCCGTACATATCATTAGAGGCAACGCTGGTGGTTATGCTAACTGGAGTTTGTATCGCATATGGCACCTTTGTCTACCTATTTCTTCAAGGAGAGGAAGCAGTGTCATCTTCAAGGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

436

Amino Acids

47.37

Weight (kDa)

6.59

Isoelectric Point (pI)

26.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 35 - 373 1.4e-06 Major Facilitator Superfamily
UNC-93 PF05978 60 - 417 4.2e-39 Ion channel regulatory protein UNC-93
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 134, 1253
AccB7I CCANNNNNTGG 1 cut(s) 148
AccBSI CCGCTC 1 cut(s) 1161
AccI GTMKAC 3 cut(s) 779, 916, 1263
AccII CGCG 2 cut(s) 424, 1119
AciI CCGC 3 cut(s) 138, 1020, 1161
AclWI GGATC 2 cut(s) 268, 629
AcsI RAATTY 4 cut(s) 485, 676, 812, 1003
AcuI CTGAAG 3 cut(s) 737, 956, 1146
AcyI GRCGYC 2 cut(s) 135, 236
AfaI GTAC 6 cut(s) 206, 315, 338, 590, 747, 1196
AfiI CCNNNNNNNGG 3 cut(s) 148, 772, 842
AgsI TTSAA 5 cut(s) 381, 478, 1114, 1277, 1302
AjnI CCWGG 1 cut(s) 568
AluBI AGCT 7 cut(s) 102, 156, 254, 311, 965, 1049, 1144
AluI AGCT 7 cut(s) 102, 156, 254, 311, 965, 1049, 1144
Alw21I GWGCWC 5 cut(s) 74, 93, 158, 256, 967
Alw26I GTCTC 2 cut(s) 243, 935
Alw44I GTGCAC 1 cut(s) 89
AlwI GGATC 2 cut(s) 268, 629
AlwNI CAGNNNCTG 1 cut(s) 148
AoxI GGCC 1 cut(s) 807
ApaLI GTGCAC 1 cut(s) 89
ApeKI GCWGC 2 cut(s) 419, 1046
ApoI RAATTY 4 cut(s) 485, 676, 812, 1003
AspLEI GCGC 3 cut(s) 137, 424, 1119
AspS9I GGNCC 1 cut(s) 807
AsuC2I CCSGG 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 808, 1076
AxyI CCTNAGG 1 cut(s) 616
BaeGI GKGCMC 1 cut(s) 93
BanI GGYRCC 2 cut(s) 134, 1253
BanII GRGCYC 3 cut(s) 158, 256, 967
BauI CACGAG 1 cut(s) 172
Bbv12I GWGCWC 5 cut(s) 74, 93, 158, 256, 967
BbvI GCAGC 2 cut(s) 406, 1058
BccI CCATC 4 cut(s) 545, 548, 947, 1061
BciT130I CCWGG 1 cut(s) 570
BciVI GTATCC 1 cut(s) 357
BclI TGATCA 2 cut(s) 321, 759
BcnI CCSGG 1 cut(s) 39
BcoDI GTCTC 2 cut(s) 243, 935
BfaI CTAG 1 cut(s) 1100
BfmI CTRYAG 1 cut(s) 604
BfoI RGCGCY 1 cut(s) 138
BfuI GTATCC 1 cut(s) 357
BisI GCNGC 3 cut(s) 138, 420, 1047
BlsI GCNGC 3 cut(s) 139, 421, 1048
Bme1390I CCNGG 2 cut(s) 39, 570
BmgT120I GGNCC 1 cut(s) 807
BmiI GGNNCC 3 cut(s) 136, 1132, 1255
BmrFI CCNGG 2 cut(s) 39, 570
BmsI GCATC 2 cut(s) 267, 880
BpmI CTGGAG 3 cut(s) 170, 225, 1254
BpuEI CTTGAG 2 cut(s) 917, 1130
BpuMI CCSGG 1 cut(s) 39
BsaHI GRCGYC 2 cut(s) 135, 236
BsaI GGTCTC 1 cut(s) 935
BsaJI CCNNGG 2 cut(s) 37, 364
Bsc4I CCNNNNNNNGG 3 cut(s) 148, 772, 842
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 4 cut(s) 242, 295, 302, 1237
Bse21I CCTNAGG 1 cut(s) 616
Bse3DI GCAATG 3 cut(s) 29, 873, 1032
BseBI CCWGG 1 cut(s) 570
BseDI CCNNGG 2 cut(s) 37, 364
BseGI GGATG 2 cut(s) 540, 762
BseLI CCNNNNNNNGG 3 cut(s) 148, 772, 842
BseMI GCAATG 3 cut(s) 29, 873, 1032
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 4 cut(s) 242, 295, 302, 1237
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 2 cut(s) 406, 1058
Bsh1236I CGCG 2 cut(s) 424, 1119
BshFI GGCC 1 cut(s) 809
BshNI GGYRCC 2 cut(s) 134, 1253
BsiHKAI GWGCWC 5 cut(s) 74, 93, 158, 256, 967
BsiSI CCGG 2 cut(s) 39, 53
BslFI GGGAC 3 cut(s) 196, 298, 415
BslI CCNNNNNNNGG 3 cut(s) 148, 772, 842
BsmAI GTCTC 2 cut(s) 243, 935
BsmBI CGTCTC 1 cut(s) 243
BsmFI GGGAC 3 cut(s) 196, 298, 415
BsmI GAATGC 1 cut(s) 756
BsnI GGCC 1 cut(s) 809
Bso31I GGTCTC 1 cut(s) 935
Bsp1286I GDGCHC 5 cut(s) 74, 93, 158, 256, 967
Bsp1407I TGTACA 1 cut(s) 313
Bsp143I GATC 5 cut(s) 260, 321, 621, 759, 1086
BspACI CCGC 3 cut(s) 138, 1020, 1161
BspANI GGCC 1 cut(s) 809
BspCNI CTCAG 1 cut(s) 90
BspFNI CGCG 2 cut(s) 424, 1119
BspLI GGNNCC 3 cut(s) 136, 1132, 1255
BspMAI CTGCAG 1 cut(s) 608
BspPI GGATC 2 cut(s) 268, 629
BspQI GCTCTTC 1 cut(s) 62
BspT107I GGYRCC 2 cut(s) 134, 1253
BspTNI GGTCTC 1 cut(s) 935
BsrBI CCGCTC 1 cut(s) 1161
BsrDI GCAATG 3 cut(s) 29, 873, 1032
BsrFI RCCGGY 1 cut(s) 52
BsrGI TGTACA 1 cut(s) 313
BsrI ACTGG 4 cut(s) 242, 295, 302, 1237
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 37, 364
BssMI GATC 5 cut(s) 260, 321, 621, 759, 1086
BssNAI GTATAC 1 cut(s) 780
BssNI GRCGYC 2 cut(s) 135, 236
BssSI CACGAG 1 cut(s) 172
Bst1107I GTATAC 1 cut(s) 780
Bst2BI CACGAG 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 570
Bst6I CTCTTC 3 cut(s) 62, 227, 382
BstACI GRCGYC 2 cut(s) 135, 236
BstAUI TGTACA 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 1018
BstDEI CTNAG 3 cut(s) 98, 545, 616
BstF5I GGATG 2 cut(s) 540, 762
BstFNI CGCG 2 cut(s) 424, 1119
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 3 cut(s) 137, 424, 1119
BstKTI GATC 5 cut(s) 263, 324, 624, 762, 1089
BstMAI GTCTC 2 cut(s) 243, 935
BstMBI GATC 5 cut(s) 260, 321, 621, 759, 1086
BstMWI GCNNNNNNNGC 3 cut(s) 134, 1017, 1043
BstNI CCWGG 1 cut(s) 570
BstSCI CCNGG 2 cut(s) 37, 568
BstSFI CTRYAG 1 cut(s) 604
BstSLI GKGCMC 1 cut(s) 93
BstUI CGCG 2 cut(s) 424, 1119
BstV1I GCAGC 2 cut(s) 406, 1058
BstZ17I GTATAC 1 cut(s) 780
Bsu36I CCTNAGG 1 cut(s) 616
BsuI GTATCC 1 cut(s) 357
BsuRI GGCC 1 cut(s) 809
BtsCI GGATG 2 cut(s) 540, 762
BtsI GCAGTG 1 cut(s) 1296
BtsIMutI CAGTG 4 cut(s) 165, 249, 1096, 1296
Cac8I GCNNGC 1 cut(s) 1018
CaiI CAGNNNCTG 1 cut(s) 148
CfoI GCGC 3 cut(s) 137, 424, 1119
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 807
CseI GACGC 1 cut(s) 225
Csp6I GTAC 6 cut(s) 205, 314, 337, 589, 746, 1195
CspCI CAANNNNNGTGG 2 cut(s) 1200, 1235
CviAII CATG 4 cut(s) 77, 431, 452, 595
CviQI GTAC 6 cut(s) 205, 314, 337, 589, 746, 1195
DdeI CTNAG 3 cut(s) 98, 545, 616
DinI GGCGCC 1 cut(s) 136
DpnI GATC 5 cut(s) 262, 323, 623, 761, 1088
DpnII GATC 5 cut(s) 260, 321, 621, 759, 1086
Eam1104I CTCTTC 3 cut(s) 62, 227, 382
EarI CTCTTC 3 cut(s) 62, 227, 382
Ecl136II GAGCTC 3 cut(s) 156, 254, 965
Eco24I GRGCYC 3 cut(s) 158, 256, 967
Eco31I GGTCTC 1 cut(s) 935
Eco32I GATATC 1 cut(s) 708
Eco53kI GAGCTC 3 cut(s) 156, 254, 965
Eco57I CTGAAG 3 cut(s) 737, 956, 1146
Eco81I CCTNAGG 1 cut(s) 616
EcoICRI GAGCTC 3 cut(s) 156, 254, 965
EcoRI GAATTC 2 cut(s) 485, 812
EcoRII CCWGG 1 cut(s) 568
EcoRV GATATC 1 cut(s) 708
EcoT38I GRGCYC 3 cut(s) 158, 256, 967
EgeI GGCGCC 1 cut(s) 136
EheI GGCGCC 1 cut(s) 136
Esp3I CGTCTC 1 cut(s) 243
FaeI CATG 4 cut(s) 80, 434, 455, 598
FaqI GGGAC 3 cut(s) 196, 298, 415
FatI CATG 4 cut(s) 76, 430, 451, 594
FauNDI CATATG 1 cut(s) 1249
FbaI TGATCA 2 cut(s) 321, 759
FblI GTMKAC 3 cut(s) 779, 916, 1263
Fnu4HI GCNGC 3 cut(s) 138, 420, 1047
FokI GGATG 2 cut(s) 527, 749
FriOI GRGCYC 3 cut(s) 158, 256, 967
Fsp4HI GCNGC 3 cut(s) 138, 420, 1047
FspBI CTAG 1 cut(s) 1100
GlaI GCGC 3 cut(s) 136, 423, 1118
GluI GCNGC 3 cut(s) 138, 420, 1047
GsuI CTGGAG 3 cut(s) 170, 225, 1254
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 1 cut(s) 809
HapII CCGG 2 cut(s) 39, 53
HgaI GACGC 1 cut(s) 225
HhaI GCGC 3 cut(s) 137, 424, 1119
Hin1I GRCGYC 2 cut(s) 135, 236
Hin1II CATG 4 cut(s) 80, 434, 455, 598
Hin6I GCGC 3 cut(s) 135, 422, 1117
HinP1I GCGC 3 cut(s) 135, 422, 1117
HincII GTYRAC 2 cut(s) 163, 917
HindII GTYRAC 2 cut(s) 163, 917
HinfI GANTC 5 cut(s) 5, 47, 145, 918, 1071
HpaII CCGG 2 cut(s) 39, 53
HphI GGTGA 2 cut(s) 808, 1076
Hpy166II GTNNAC 6 cut(s) 91, 163, 205, 780, 917, 1264
Hpy188I TCNGA 6 cut(s) 99, 368, 521, 576, 705, 717
Hpy188III TCNNGA 1 cut(s) 149
Hpy8I GTNNAC 6 cut(s) 91, 163, 205, 780, 917, 1264
Hpy99I CGWCG 1 cut(s) 193
HpyAV CCTTC 3 cut(s) 449, 980, 1121
HpyCH4IV ACGT 1 cut(s) 188
HpyCH4V TGCA 9 cut(s) 91, 218, 434, 606, 866, 893, 1037, 1139, 1172
HpyF10VI GCNNNNNNNGC 3 cut(s) 134, 1017, 1043
HpyF3I CTNAG 3 cut(s) 98, 545, 616
HpySE526I ACGT 1 cut(s) 188
Hsp92I GRCGYC 2 cut(s) 135, 236
Hsp92II CATG 4 cut(s) 80, 434, 455, 598
HspAI GCGC 3 cut(s) 135, 422, 1117
KasI GGCGCC 1 cut(s) 134
Ksp22I TGATCA 2 cut(s) 321, 759
Kzo9I GATC 5 cut(s) 260, 321, 621, 759, 1086
LguI GCTCTTC 1 cut(s) 62
LmnI GCTCC 3 cut(s) 39, 962, 1130
Lsp1109I GCAGC 2 cut(s) 406, 1058
LweI GCATC 2 cut(s) 267, 880
MaeI CTAG 1 cut(s) 1100
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 3 cut(s) 531, 786, 829
MalI GATC 5 cut(s) 262, 323, 623, 761, 1088
MbiI CCGCTC 1 cut(s) 1161
MboI GATC 5 cut(s) 260, 321, 621, 759, 1086
MboII GAAGA 9 cut(s) 79, 214, 369, 672, 989, 1102, 1171, 1265, 1290
MhlI GDGCHC 5 cut(s) 74, 93, 158, 256, 967
MluCI AATT 6 cut(s) 351, 485, 676, 812, 1003, 1026
Mly113I GGCGCC 1 cut(s) 135
MlyI GAGTC 3 cut(s) 41, 912, 1080
MmeI TCCRAC 2 cut(s) 499, 860
MnlI CCTC 6 cut(s) 77, 374, 385, 553, 1201, 1276
MseI TTAA 2 cut(s) 641, 1077
MslI CAYNNNNRTG 2 cut(s) 629, 802
MspI CCGG 2 cut(s) 39, 53
MspR9I CCNGG 2 cut(s) 39, 570
Mva1269I GAATGC 1 cut(s) 756
MvaI CCWGG 1 cut(s) 570
MvnI CGCG 2 cut(s) 424, 1119
MwoI GCNNNNNNNGC 3 cut(s) 134, 1017, 1043
NarI GGCGCC 1 cut(s) 135
NciI CCSGG 1 cut(s) 39
NdeI CATATG 1 cut(s) 1249
NdeII GATC 5 cut(s) 260, 321, 621, 759, 1086
NlaIII CATG 4 cut(s) 80, 434, 455, 598
NlaIV GGNNCC 3 cut(s) 136, 1132, 1255
NmeAIII GCCGAG 1 cut(s) 1037
NmuCI GTSAC 1 cut(s) 531
PciSI GCTCTTC 1 cut(s) 62
PctI GAATGC 1 cut(s) 756
PfeI GAWTC 2 cut(s) 5, 145
PflFI GACNNNGTC 1 cut(s) 187
PflMI CCANNNNNTGG 1 cut(s) 148
PkrI GCNGC 3 cut(s) 139, 421, 1048
PleI GAGTC 3 cut(s) 41, 912, 1079
PluTI GGCGCC 1 cut(s) 138
PpsI GAGTC 3 cut(s) 41, 912, 1079
Psp124BI GAGCTC 3 cut(s) 158, 256, 967
Psp6I CCWGG 1 cut(s) 568
PspGI CCWGG 1 cut(s) 568
PspN4I GGNNCC 3 cut(s) 136, 1132, 1255
PspPI GGNCC 1 cut(s) 807
PstI CTGCAG 1 cut(s) 608
PstNI CAGNNNCTG 1 cut(s) 148
PsyI GACNNNGTC 1 cut(s) 187
RsaI GTAC 6 cut(s) 206, 315, 338, 590, 747, 1196
RsaNI GTAC 6 cut(s) 205, 314, 337, 589, 746, 1195
RseI CAYNNNNRTG 2 cut(s) 629, 802
SacI GAGCTC 3 cut(s) 158, 256, 967
SalI GTCGAC 1 cut(s) 915
SapI GCTCTTC 1 cut(s) 62
SaqAI TTAA 2 cut(s) 641, 1077
SatI GCNGC 3 cut(s) 138, 420, 1047
Sau3AI GATC 5 cut(s) 260, 321, 621, 759, 1086
Sau96I GGNCC 1 cut(s) 807
SchI GAGTC 3 cut(s) 41, 912, 1080
ScrFI CCNGG 2 cut(s) 39, 570
SduI GDGCHC 5 cut(s) 74, 93, 158, 256, 967
SfaNI GCATC 2 cut(s) 267, 880
SfcI CTRYAG 1 cut(s) 604
SfoI GGCGCC 1 cut(s) 136
SgrAI CRCCGGYG 1 cut(s) 52
SmiMI CAYNNNNRTG 2 cut(s) 629, 802
SmlI CTYRAG 2 cut(s) 932, 1145
SmoI CTYRAG 2 cut(s) 932, 1145
Sse9I AATT 6 cut(s) 351, 485, 676, 812, 1003, 1026
SsiI CCGC 3 cut(s) 138, 1020, 1161
SspDI GGCGCC 1 cut(s) 134
SspMI CTAG 1 cut(s) 1100
SstI GAGCTC 3 cut(s) 158, 256, 967
StyD4I CCNGG 2 cut(s) 37, 568
TaiI ACGT 1 cut(s) 191
TaqI TCGA 3 cut(s) 250, 741, 916
TasI AATT 6 cut(s) 351, 485, 676, 812, 1003, 1026
TatI WGTACW 2 cut(s) 204, 313
TauI GCSGC 1 cut(s) 140
TfiI GAWTC 2 cut(s) 5, 145
Tru1I TTAA 2 cut(s) 641, 1077
Tru9I TTAA 2 cut(s) 641, 1077
TscAI CASTG 4 cut(s) 172, 249, 1096, 1296
TseFI GTSAC 1 cut(s) 531
TseI GCWGC 2 cut(s) 419, 1046
Tsp45I GTSAC 1 cut(s) 531
TspDTI ATGAA 1 cut(s) 468
TspGWI ACGGA 1 cut(s) 1182
TspRI CASTG 4 cut(s) 172, 249, 1096, 1296
Tth111I GACNNNGTC 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 148
VneI GTGCAC 1 cut(s) 89
XapI RAATTY 4 cut(s) 485, 676, 812, 1003
XmiI GTMKAC 3 cut(s) 779, 916, 1263
XspI CTAG 1 cut(s) 1100
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.