Rroxscaffold_6G00413850

UNC93-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006088
Physical Location & Seq
Forward (+)
36173546 .. 36176963
3418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00413850.1

Sequence Viewer

Length: 1314 bp
ATGGCCCCTTCTCGCGACGAAGAGACGCCTCTCGTCGTCACCGACGCCTCGCCGGTCGAGGAGGGAAGGAGCCATACCAGAGATGTTCATATTATCAGCTCCGCGTTTCTGTTGATCTTTCTTGCTTACGGTGCTGCCCAGAATCTGGAGAGCAGTGTCAACACCGAGGAGGATTTGGGAACGACGTCGCTTGGGATTTTGTATCTGTCGTTCACGTTTTTCTCTCTGGTGGCGTCTCCGGTGGTTAGGAAACTGGGACCAAAAAATGCTTTGATTCTTGGGACTACTGGATATTGGTTGTTCATTGCTGCTAATTTGAAGCCAACTTGGTATACTATGGTTCCAGCTGCATTGTACCTGGGTTTTGCTGCTTCCATAATATGGGTTGGCCAGGGGACATATTTGACTTCTACTGCACGTAGTCATGCCAAACATAATAGCTTACATGAAGGAACGGTTATTGGCCACTTCAATGGAGAATTTTGGGGAATGTTTGCCAGTCACCAGTTTGTGGGAAATCTTATTACCCTCGCCTTGCTAAGAGATGGAACGGGGGGGAGTACTAATGGCACAACCTTATTATTCAGTGTGTTTCTTGTTAGTATGACCTTAGGTACCATACTGATGTGCTTCTTGAATAAAAGGGGTATTAAAGGAGAGGAGGACCCCCAGGGATCTTCTCCCAATTTTTATGCTTCTGTGGTATCTTTGTCAAAGACAGTCATCAGACCTTTGTATGATGTACGGATGCTATTGATCATCCCCCTTATGGCGTATTCAGGATTGCAACAAGCATTTGTATGGGCTGACTATACCGAGTATATTGTTAGTCCAACACTTGGTGTGTCTGGTGTTGGAGGTGCAATGGCAGTTTATGGGGCATGTGATGCAATATGTTCACTGGCTGCTGGTCGATTTACGTCTGGTCTCAAGTCCATCACTATTATAGTTTCTGCTGGAGCTTTCATTCAGACCATTATATATCTCTGGCTTCTTCTAATATACAGCCCAGTGAGCGGAGTACTTGGAACTGTATACCCTCTTATAATGGCTGCTGCATTGGGCATTGGTGATGGAGTCTTAAATACACAGCTCAGTGCTTTGCTTGCGATATACTTCAAGCATGATACTGAAGGAGCATTTGCACAGCTCAAGGTCTGGCAGAGTGGTACGATTTCAGCCGTCTTCTTTATTAGTCCATACATCTCATTACAGGCAATGCTGGTGGTTATGCTTGTTACAGTCTCTGTCGCATATGGTGCCTTTATGTATCTATCTATTCGAGAGAAGGCACTCTCCCATTCAAGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UNC-93

Protein Analysis

437

Amino Acids

46.88

Weight (kDa)

6.3

Isoelectric Point (pI)

31.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UNC-93 PF05978 58 - 419 3e-37 Ion channel regulatory protein UNC-93
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1046
AatII GACGTC 1 cut(s) 188
Acc65I GGTACC 1 cut(s) 614
AccB1I GGYRCC 2 cut(s) 614, 1259
AccB7I CCANNNNNTGG 4 cut(s) 145, 381, 511, 839
AccBSI CCGCTC 1 cut(s) 1017
AccI GTMKAC 2 cut(s) 332, 1035
AccII CGCG 2 cut(s) 15, 104
AciI CCGC 2 cut(s) 102, 1017
AclWI GGATC 1 cut(s) 682
AcoI YGGCCR 2 cut(s) 388, 463
AcsI RAATTY 1 cut(s) 479
AcuI CTGAAG 1 cut(s) 1152
AcyI GRCGYC 4 cut(s) 26, 45, 185, 233
AdeI CACNNNGTG 1 cut(s) 842
AfaI GTAC 6 cut(s) 356, 562, 616, 744, 1023, 1171
AfiI CCNNNNNNNGG 6 cut(s) 145, 381, 511, 769, 839, 1016
AgsI TTSAA 5 cut(s) 319, 472, 637, 1120, 1305
AjnI CCWGG 3 cut(s) 357, 390, 669
AluBI AGCT 6 cut(s) 99, 347, 441, 962, 1093, 1150
AluI AGCT 6 cut(s) 99, 347, 441, 962, 1093, 1150
Alw26I GTCTC 4 cut(s) 17, 240, 932, 1249
AlwI GGATC 1 cut(s) 682
AlwNI CAGNNNCTG 2 cut(s) 145, 1247
AoxI GGCC 3 cut(s) 3, 388, 463
ApeKI GCWGC 7 cut(s) 134, 308, 347, 368, 905, 1052, 1055
ApoI RAATTY 1 cut(s) 479
Asp718I GGTACC 1 cut(s) 614
AspS9I GGNCC 3 cut(s) 4, 257, 664
AsuHPI GGTGA 3 cut(s) 31, 494, 1082
AvaII GGWCC 2 cut(s) 257, 664
AxyI CCTNAGG 1 cut(s) 610
BalI TGGCCA 2 cut(s) 390, 465
BanI GGYRCC 2 cut(s) 614, 1259
BarI GAAGNNNNNNTAC 2 cut(s) 58, 90
BbsI GAAGAC 1 cut(s) 1177
BbvI GCAGC 7 cut(s) 121, 295, 334, 355, 892, 1039, 1042
BccI CCATC 3 cut(s) 539, 944, 1067
BceAI ACGGC 1 cut(s) 1166
BciT130I CCWGG 3 cut(s) 359, 392, 671
BclI TGATCA 1 cut(s) 756
BcoDI GTCTC 4 cut(s) 17, 240, 932, 1249
BisI GCNGC 7 cut(s) 135, 309, 348, 369, 906, 1053, 1056
BlsI GCNGC 7 cut(s) 136, 310, 349, 370, 907, 1054, 1057
BmcAI AGTACT 2 cut(s) 562, 1023
Bme1390I CCNGG 3 cut(s) 359, 392, 671
Bme18I GGWCC 2 cut(s) 257, 664
BmgT120I GGNCC 3 cut(s) 4, 257, 664
BmiI GGNNCC 7 cut(s) 6, 71, 258, 342, 616, 666, 1261
BmrFI CCNGG 3 cut(s) 359, 392, 671
BmrI ACTGGG 2 cut(s) 263, 1004
BmsI GCATC 2 cut(s) 738, 877
BmuI ACTGGG 2 cut(s) 263, 1004
BpiI GAAGAC 1 cut(s) 1177
BpmI CTGGAG 2 cut(s) 167, 978
BpuEI CTTGAG 2 cut(s) 914, 1136
BsaAI YACGTR 1 cut(s) 419
BsaHI GRCGYC 4 cut(s) 26, 45, 185, 233
BsaI GGTCTC 1 cut(s) 932
BsaJI CCNNGG 5 cut(s) 165, 358, 391, 669, 670
BsaWI WCCGGW 1 cut(s) 238
Bsc4I CCNNNNNNNGG 6 cut(s) 145, 381, 511, 769, 839, 1016
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 6 cut(s) 258, 292, 498, 505, 906, 1010
Bse21I CCTNAGG 1 cut(s) 610
Bse3DI GCAATG 3 cut(s) 303, 870, 1224
BseBI CCWGG 3 cut(s) 359, 392, 671
BseDI CCNNGG 5 cut(s) 165, 358, 391, 669, 670
BseGI GGATG 2 cut(s) 753, 759
BseLI CCNNNNNNNGG 6 cut(s) 145, 381, 511, 769, 839, 1016
BseMI GCAATG 3 cut(s) 303, 870, 1224
BseMII CTCAG 1 cut(s) 1108
BseNI ACTGG 6 cut(s) 258, 292, 498, 505, 906, 1010
BseRI GAGGAG 3 cut(s) 74, 182, 674
BseXI GCAGC 7 cut(s) 121, 295, 334, 355, 892, 1039, 1042
BsgI GTGCAG 1 cut(s) 399
Bsh1236I CGCG 2 cut(s) 15, 104
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 5, 390, 465
BshNI GGYRCC 2 cut(s) 614, 1259
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 53, 239
BslFI GGGAC 3 cut(s) 270, 295, 409
BslI CCNNNNNNNGG 6 cut(s) 145, 381, 511, 769, 839, 1016
BsmAI GTCTC 4 cut(s) 17, 240, 932, 1249
BsmBI CGTCTC 2 cut(s) 17, 240
BsmFI GGGAC 3 cut(s) 270, 295, 409
BsnI GGCC 3 cut(s) 5, 390, 465
Bso31I GGTCTC 1 cut(s) 932
Bsp143I GATC 3 cut(s) 114, 674, 756
Bsp68I TCGCGA 1 cut(s) 15
BspACI CCGC 2 cut(s) 102, 1017
BspANI GGCC 3 cut(s) 5, 390, 465
BspCNI CTCAG 1 cut(s) 1107
BspFNI CGCG 2 cut(s) 15, 104
BspLI GGNNCC 7 cut(s) 6, 71, 258, 342, 616, 666, 1261
BspPI GGATC 1 cut(s) 682
BspT107I GGYRCC 2 cut(s) 614, 1259
BspTNI GGTCTC 1 cut(s) 932
BsrBI CCGCTC 1 cut(s) 1017
BsrDI GCAATG 3 cut(s) 303, 870, 1224
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 6 cut(s) 258, 292, 498, 505, 906, 1010
BssAI RCCGGY 1 cut(s) 52
BssECI CCNNGG 5 cut(s) 165, 358, 391, 669, 670
BssMI GATC 3 cut(s) 114, 674, 756
BssNAI GTATAC 2 cut(s) 333, 1036
BssNI GRCGYC 4 cut(s) 26, 45, 185, 233
Bst1107I GTATAC 2 cut(s) 333, 1036
Bst2UI CCWGG 3 cut(s) 359, 392, 671
Bst4CI ACNGT 5 cut(s) 131, 457, 721, 1033, 1243
Bst6I CTCTTC 1 cut(s) 15
BstACI GRCGYC 4 cut(s) 26, 45, 185, 233
BstAPI GCANNNNNTGC 2 cut(s) 887, 1259
BstBAI YACGTR 1 cut(s) 419
BstC8I GCNNGC 1 cut(s) 1107
BstDEI CTNAG 3 cut(s) 539, 610, 1094
BstF5I GGATG 2 cut(s) 753, 759
BstFNI CGCG 2 cut(s) 15, 104
BstKTI GATC 3 cut(s) 117, 677, 759
BstMAI GTCTC 4 cut(s) 17, 240, 932, 1249
BstMBI GATC 3 cut(s) 114, 674, 756
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 5 cut(s) 131, 887, 1014, 1106, 1259
BstNI CCWGG 3 cut(s) 359, 392, 671
BstNSI RCATGY 1 cut(s) 885
BstSCI CCNGG 3 cut(s) 357, 390, 669
BstUI CGCG 2 cut(s) 15, 104
BstV1I GCAGC 7 cut(s) 121, 295, 334, 355, 892, 1039, 1042
BstV2I GAAGAC 1 cut(s) 1177
BstX2I RGATCY 1 cut(s) 674
BstXI CCANNNNNNTGG 1 cut(s) 473
BstYI RGATCY 1 cut(s) 674
BstZ17I GTATAC 2 cut(s) 333, 1036
Bsu36I CCTNAGG 1 cut(s) 610
BsuRI GGCC 3 cut(s) 5, 390, 465
BtsCI GGATG 2 cut(s) 753, 759
BtsI GCAGTG 1 cut(s) 160
BtsIMutI CAGTG 5 cut(s) 160, 592, 899, 1017, 1102
BtuMI TCGCGA 1 cut(s) 15
Cac8I GCNNGC 1 cut(s) 1107
CaiI CAGNNNCTG 2 cut(s) 145, 1247
Cfr10I RCCGGY 1 cut(s) 52
Cfr13I GGNCC 3 cut(s) 4, 257, 664
CseI GACGC 3 cut(s) 34, 53, 222
Csp6I GTAC 6 cut(s) 355, 561, 615, 743, 1022, 1170
CspCI CAANNNNNGTGG 2 cut(s) 1206, 1241
CviAII CATG 4 cut(s) 425, 446, 882, 1124
CviQI GTAC 6 cut(s) 355, 561, 615, 743, 1022, 1170
DdeI CTNAG 3 cut(s) 539, 610, 1094
DpnI GATC 3 cut(s) 116, 676, 758
DpnII GATC 3 cut(s) 114, 674, 756
DraIII CACNNNGTG 1 cut(s) 842
EaeI YGGCCR 2 cut(s) 388, 463
Eam1104I CTCTTC 1 cut(s) 15
EarI CTCTTC 1 cut(s) 15
Eco31I GGTCTC 1 cut(s) 932
Eco47I GGWCC 2 cut(s) 257, 664
Eco57I CTGAAG 1 cut(s) 1152
Eco81I CCTNAGG 1 cut(s) 610
EcoO109I RGGNCCY 1 cut(s) 664
EcoRII CCWGG 3 cut(s) 357, 390, 669
Esp3I CGTCTC 2 cut(s) 17, 240
FaeI CATG 4 cut(s) 428, 449, 885, 1127
FaqI GGGAC 3 cut(s) 270, 295, 409
FatI CATG 4 cut(s) 424, 445, 881, 1123
FauNDI CATATG 1 cut(s) 1255
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 2 cut(s) 332, 1035
Fnu4HI GCNGC 7 cut(s) 135, 309, 348, 369, 906, 1053, 1056
FokI GGATG 2 cut(s) 746, 760
Fsp4HI GCNGC 7 cut(s) 135, 309, 348, 369, 906, 1053, 1056
GluI GCNGC 7 cut(s) 135, 309, 348, 369, 906, 1053, 1056
GsuI CTGGAG 2 cut(s) 167, 978
HaeIII GGCC 3 cut(s) 5, 390, 465
HapII CCGG 2 cut(s) 53, 239
HgaI GACGC 3 cut(s) 34, 53, 222
Hin1I GRCGYC 4 cut(s) 26, 45, 185, 233
Hin1II CATG 4 cut(s) 428, 449, 885, 1127
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HinfI GANTC 3 cut(s) 142, 274, 1077
HpaII CCGG 2 cut(s) 53, 239
HphI GGTGA 3 cut(s) 31, 494, 1082
Hpy166II GTNNAC 5 cut(s) 160, 213, 333, 899, 1036
Hpy188I TCNGA 2 cut(s) 728, 972
Hpy188III TCNNGA 5 cut(s) 14, 146, 634, 780, 1283
Hpy8I GTNNAC 5 cut(s) 160, 213, 333, 899, 1036
Hpy99I CGWCG 5 cut(s) 20, 38, 47, 187, 190
HpyAV CCTTC 5 cut(s) 18, 60, 443, 1127, 1282
HpyCH4III ACNGT 5 cut(s) 131, 457, 721, 1033, 1243
HpyCH4IV ACGT 4 cut(s) 185, 215, 418, 920
HpyCH4V TGCA 7 cut(s) 350, 416, 787, 863, 890, 1058, 1145
HpyF10VI GCNNNNNNNGC 5 cut(s) 131, 887, 1014, 1106, 1259
HpyF3I CTNAG 3 cut(s) 539, 610, 1094
HpySE526I ACGT 4 cut(s) 185, 215, 418, 920
Hsp92I GRCGYC 4 cut(s) 26, 45, 185, 233
Hsp92II CATG 4 cut(s) 428, 449, 885, 1127
KpnI GGTACC 1 cut(s) 618
Ksp22I TGATCA 1 cut(s) 756
Kzo9I GATC 3 cut(s) 114, 674, 756
LmnI GCTCC 4 cut(s) 69, 104, 959, 1136
Lsp1109I GCAGC 7 cut(s) 121, 295, 334, 355, 892, 1039, 1042
LweI GCATC 2 cut(s) 738, 877
MaeII ACGT 4 cut(s) 185, 215, 418, 920
MaeIII GTNAC 3 cut(s) 37, 500, 1237
MalI GATC 3 cut(s) 116, 676, 758
MbiI CCGCTC 1 cut(s) 1017
MboI GATC 3 cut(s) 114, 674, 756
MboII GAAGA 4 cut(s) 32, 669, 986, 1177
MflI RGATCY 1 cut(s) 674
MlsI TGGCCA 2 cut(s) 390, 465
MluCI AATT 3 cut(s) 313, 479, 685
MluNI TGGCCA 2 cut(s) 390, 465
MlyI GAGTC 1 cut(s) 1086
MmeI TCCRAC 2 cut(s) 835, 857
Mox20I TGGCCA 2 cut(s) 390, 465
MscI TGGCCA 2 cut(s) 390, 465
MseI TTAA 2 cut(s) 651, 1082
MslI CAYNNNNRTG 3 cut(s) 471, 623, 799
Msp20I TGGCCA 2 cut(s) 390, 465
MspA1I CMGCKG 1 cut(s) 347
MspI CCGG 2 cut(s) 53, 239
MspR9I CCNGG 3 cut(s) 359, 392, 671
MvaI CCWGG 3 cut(s) 359, 392, 671
MvnI CGCG 2 cut(s) 15, 104
MwoI GCNNNNNNNGC 5 cut(s) 131, 887, 1014, 1106, 1259
NdeI CATATG 1 cut(s) 1255
NdeII GATC 3 cut(s) 114, 674, 756
NlaIII CATG 4 cut(s) 428, 449, 885, 1127
NlaIV GGNNCC 7 cut(s) 6, 71, 258, 342, 616, 666, 1261
NmuCI GTSAC 2 cut(s) 37, 500
NruI TCGCGA 1 cut(s) 15
NspI RCATGY 1 cut(s) 885
PasI CCCWGGG 1 cut(s) 670
PcsI WCGNNNNNNNCGW 1 cut(s) 39
PfeI GAWTC 2 cut(s) 142, 274
PflMI CCANNNNNTGG 4 cut(s) 145, 381, 511, 839
PkrI GCNGC 7 cut(s) 136, 310, 349, 370, 907, 1054, 1057
PleI GAGTC 1 cut(s) 1085
PpsI GAGTC 1 cut(s) 1085
Ppu21I YACGTR 1 cut(s) 419
PpuMI RGGWCCY 1 cut(s) 664
PsiI TTATAA 1 cut(s) 1046
Psp5II RGGWCCY 1 cut(s) 664
Psp6I CCWGG 3 cut(s) 357, 390, 669
PspGI CCWGG 3 cut(s) 357, 390, 669
PspN4I GGNNCC 7 cut(s) 6, 71, 258, 342, 616, 666, 1261
PspPI GGNCC 3 cut(s) 4, 257, 664
PspPPI RGGWCCY 1 cut(s) 664
PsrI GAACNNNNNNTAC 2 cut(s) 194, 226
PstNI CAGNNNCTG 2 cut(s) 145, 1247
PsuI RGATCY 1 cut(s) 674
PvuII CAGCTG 1 cut(s) 347
RruI TCGCGA 1 cut(s) 15
RsaI GTAC 6 cut(s) 356, 562, 616, 744, 1023, 1171
RsaNI GTAC 6 cut(s) 355, 561, 615, 743, 1022, 1170
RseI CAYNNNNRTG 3 cut(s) 471, 623, 799
SaqAI TTAA 2 cut(s) 651, 1082
SatI GCNGC 7 cut(s) 135, 309, 348, 369, 906, 1053, 1056
Sau3AI GATC 3 cut(s) 114, 674, 756
Sau96I GGNCC 3 cut(s) 4, 257, 664
ScaI AGTACT 2 cut(s) 562, 1023
SchI GAGTC 1 cut(s) 1086
ScrFI CCNGG 3 cut(s) 359, 392, 671
SfaNI GCATC 2 cut(s) 738, 877
SinI GGWCC 2 cut(s) 257, 664
SmiMI CAYNNNNRTG 3 cut(s) 471, 623, 799
SmlI CTYRAG 2 cut(s) 929, 1151
SmoI CTYRAG 2 cut(s) 929, 1151
Sse9I AATT 3 cut(s) 313, 479, 685
SsiI CCGC 2 cut(s) 102, 1017
StyD4I CCNGG 3 cut(s) 357, 390, 669
TaaI ACNGT 5 cut(s) 131, 457, 721, 1033, 1243
TaiI ACGT 4 cut(s) 188, 218, 421, 923
TaqI TCGA 3 cut(s) 57, 913, 1282
TasI AATT 3 cut(s) 313, 479, 685
TatI WGTACW 2 cut(s) 560, 1021
TfiI GAWTC 2 cut(s) 142, 274
Tru1I TTAA 2 cut(s) 651, 1082
Tru9I TTAA 2 cut(s) 651, 1082
TscAI CASTG 5 cut(s) 160, 592, 906, 1017, 1102
TseFI GTSAC 2 cut(s) 37, 500
TseI GCWGC 7 cut(s) 134, 308, 347, 368, 905, 1052, 1055
Tsp45I GTSAC 2 cut(s) 37, 500
TspDTI ATGAA 5 cut(s) 77, 292, 462, 955, 1299
TspGWI ACGGA 1 cut(s) 760
TspRI CASTG 5 cut(s) 160, 592, 906, 1017, 1102
Van91I CCANNNNNTGG 4 cut(s) 145, 381, 511, 839
VpaK11BI GGWCC 2 cut(s) 257, 664
XapI RAATTY 1 cut(s) 479
XceI RCATGY 1 cut(s) 885
XmiI GTMKAC 2 cut(s) 332, 1035
ZraI GACGTC 1 cut(s) 186
ZrmI AGTACT 2 cut(s) 562, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.