Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011203

Physical Location & Seq

Genomic Coordinates Forward (+)

9233457 .. 9234907

Gene Structure 1451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14890.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGGTGGCCAAAATGCACATAAAAAACCACAACATTCCTCAAAGCTTTCCCCCAAGTTACTCTATAAAAAGTGCAAAGTGAAAGTTGATCCAAAGCAAAAGCACACGATCCCATACAAGATGGAACTAGAAACCACCACCACAACCATCATGACCGCTCTGGCCACCCTCACACCTCCCCAACTCTCCGATCTCACCCACACCCTCCTCTCCCTCTCCCACCACCACCGCCGCCGCATCTCATCTCTCCTCTCCTCTCCCATCCTATTCACACTCACCATCCGCCGCCTCAACTCGCTCTCCCTCCACCACAAGACCATCCTCATCTCCCGCCACGTCATCTCCTCCCTCCACCCTCTCGTCCTCCACTTCCAGCCCGCCGCCAACACCCCAAAGCCACGTGTCAAGCTGAGAGACCTCGACGCAGTCCTTCTCCTGCTCCTGCTCTGCGAGGCCCACCAGCACGACCCTGACGCCCTCCAAGCCCCAGTTACAAAATGGCGGGAAGTAGTCGGAAAGTTCTACTGCGACAGCATGCTAACGGTTTCCGGCATCGGAGACCACAACGCGTCGGTGTTGGTTTCTTACGTGGAAATGCTGACGAGGTGTCTGAGGTTCGTTAGTAGTAGTTTTGGCGGGAAGGCTGGGAGGGAAGTGGCGGCGTCGAAAGCGGTGGTGGTGGCTCTACCGTCGGTGGAGGTGAAAAGCGGTGGGACAAAGGAGTGCGTGATATGTAAGGAGGAGATGGCGGAGAACAGAGATGTGTGCGAGCTGCCGTGCCGGCATTTGTTTCATTGGGTGTGTATTTTGCGGTGGCTGAGCAAGAGGAACACGTGTCCATGCTGCCGGTTCGGGCTTCCGACCGATGACGTCTACGGGGAGATCCAGCGGCTGTGGGAGGTTTTGGTTAGTGTGAGTTCCGACAAGGGTTTAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009501 GO:0009536 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

313

Amino Acids

34.91

Weight (kDa)

9.39

Isoelectric Point (pI)

43.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-rbx1	PF12678	240 - 283	9.1e-08	RING-H2 zinc finger domain
zf-RING_2	PF13639	241 - 283	6.9e-13	Ring finger domain
zf-RING_11	PF17123	241 - 269	8e-07	RING-like zinc finger
zf-C3HC4_2	PF13923	241 - 282	6.5e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02750
fragaria_vesca	FvH4_6g14890
malus_domestica	MD04G1110800.v1.1 MD12G1130000.v1.1 MD15G1018600.v1.1
pyrus_communis	pycom04g10430 pycom12g12610
rosa_chinensis	RchiOBHm_Chr3g0468101
rosa_laevigata	RLG00000024449
rosa_multiflora	Rmu_co8333667.1_g000001 Rmu_sc0003659.1_g000014 Rmu_sc0012651.1_g000009 Rmu_sc0039822.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413050
rosa_rugosa	Rorug03G0092700
rosa_samantha	Rh3AG141100 Rh3BG162600 Rh3CG162400 Rh3DG163100
rosa_wichuraiana	Rw3G013330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	873
AccBSI	CCGCTC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	873
AccII	CGCG	1 cut(s)	569
AclWI	GGATC	3 cut(s)	83, 103, 877
AcoI	YGGCCR	2 cut(s)	7, 162
AcvI	CACGTG	2 cut(s)	401, 834
AcyI	GRCGYC	3 cut(s)	474, 662, 870
AflIII	ACRYGT	4 cut(s)	400, 567, 831, 833
AhdI	GACNNNNNGTC	1 cut(s)	606
AjiI	CACGTC	1 cut(s)	337
AluBI	AGCT	3 cut(s)	46, 409, 772
AluI	AGCT	3 cut(s)	46, 409, 772
Alw26I	GTCTC	2 cut(s)	408, 552
AlwI	GGATC	3 cut(s)	83, 103, 877
AlwNI	CAGNNNCTG	1 cut(s)	892
AoxI	GGCC	3 cut(s)	7, 162, 453
ApeKI	GCWGC	2 cut(s)	772, 843
AspS9I	GGNCC	1 cut(s)	454
AsuHPI	GGTGA	3 cut(s)	187, 268, 712
BalI	TGGCCA	2 cut(s)	9, 164
BbrPI	CACGTG	2 cut(s)	401, 834
BbvI	GCAGC	2 cut(s)	759, 830
BccI	CCATC	6 cut(s)	115, 155, 269, 287, 326, 739
BceAI	ACGGC	1 cut(s)	760
BcoDI	GTCTC	2 cut(s)	408, 552
BfaI	CTAG	1 cut(s)	128
BglI	GCCNNNNNGGC	1 cut(s)	781
BisI	GCNGC	8 cut(s)	232, 235, 286, 381, 660, 773, 844, 890
BlpI	GCTNAGC	1 cut(s)	818
BlsI	GCNGC	8 cut(s)	233, 236, 287, 382, 661, 774, 845, 891
BmeRI	GACNNNNNGTC	1 cut(s)	606
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	1 cut(s)	454
BmrI	ACTGGG	1 cut(s)	482
BmsI	GCATC	2 cut(s)	246, 561
BmuI	ACTGGG	1 cut(s)	482
Bpu1102I	GCTNAGC	1 cut(s)	818
BsaAI	YACGTR	3 cut(s)	401, 589, 834
BsaHI	GRCGYC	3 cut(s)	474, 662, 870
BsaI	GGTCTC	2 cut(s)	408, 552
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 314, 326, 356
Bse118I	RCCGGY	2 cut(s)	780, 846
Bse1I	ACTGG	1 cut(s)	488
BseGI	GGATG	3 cut(s)	261, 279, 318
BseMII	CTCAG	3 cut(s)	401, 602, 809
BseNI	ACTGG	1 cut(s)	488
BseRI	GAGGAG	5 cut(s)	197, 239, 244, 334, 755
BseXI	GCAGC	2 cut(s)	759, 830
BseYI	CCCAGC	1 cut(s)	644
Bsh1236I	CGCG	1 cut(s)	569
Bsh1285I	CGRYCG	1 cut(s)	864
BshFI	GGCC	3 cut(s)	9, 164, 455
BsiEI	CGRYCG	1 cut(s)	864
BsiSI	CCGG	3 cut(s)	549, 781, 847
BslFI	GGGAC	1 cut(s)	727
BsmAI	GTCTC	2 cut(s)	408, 552
BsmFI	GGGAC	1 cut(s)	727
BsnI	GGCC	3 cut(s)	9, 164, 455
Bso31I	GGTCTC	2 cut(s)	408, 552
Bsp143I	GATC	4 cut(s)	88, 108, 190, 882
Bsp1720I	GCTNAGC	1 cut(s)	818
BspANI	GGCC	3 cut(s)	9, 164, 455
BspCNI	CTCAG	3 cut(s)	402, 603, 810
BspFNI	CGCG	1 cut(s)	569
BspHI	TCATGA	1 cut(s)	150
BspPI	GGATC	3 cut(s)	83, 103, 877
BspTNI	GGTCTC	2 cut(s)	408, 552
BsrBI	CCGCTC	1 cut(s)	158
BsrFI	RCCGGY	2 cut(s)	780, 846
BsrI	ACTGG	1 cut(s)	488
BssAI	RCCGGY	2 cut(s)	780, 846
BssMI	GATC	4 cut(s)	88, 108, 190, 882
BssNI	GRCGYC	3 cut(s)	474, 662, 870
Bst4CI	ACNGT	2 cut(s)	544, 690
BstACI	GRCGYC	3 cut(s)	474, 662, 870
BstBAI	YACGTR	3 cut(s)	401, 589, 834
BstC8I	GCNNGC	4 cut(s)	378, 536, 770, 782
BstDEI	CTNAG	3 cut(s)	410, 611, 818
BstF5I	GGATG	3 cut(s)	261, 279, 318
BstFNI	CGCG	1 cut(s)	569
BstKTI	GATC	4 cut(s)	91, 111, 193, 885
BstMAI	GTCTC	2 cut(s)	408, 552
BstMBI	GATC	4 cut(s)	88, 108, 190, 882
BstMCI	CGRYCG	1 cut(s)	864
BstMWI	GCNNNNNNNGC	3 cut(s)	482, 668, 781
BstNSI	RCATGY	1 cut(s)	538
BstUI	CGCG	1 cut(s)	569
BstV1I	GCAGC	2 cut(s)	759, 830
BstX2I	RGATCY	1 cut(s)	882
BstYI	RGATCY	1 cut(s)	882
BsuRI	GGCC	3 cut(s)	9, 164, 455
BtrI	CACGTC	1 cut(s)	337
BtsCI	GGATG	3 cut(s)	261, 279, 318
Cac8I	GCNNGC	4 cut(s)	378, 536, 770, 782
CaiI	CAGNNNCTG	1 cut(s)	892
CciI	TCATGA	1 cut(s)	150
Cfr10I	RCCGGY	2 cut(s)	780, 846
Cfr13I	GGNCC	1 cut(s)	454
CseI	GACGC	4 cut(s)	431, 482, 558, 651
CviAII	CATG	3 cut(s)	151, 535, 840
DdeI	CTNAG	3 cut(s)	410, 611, 818
DpnI	GATC	4 cut(s)	90, 110, 192, 884
DpnII	GATC	4 cut(s)	88, 108, 190, 882
DriI	GACNNNNNGTC	1 cut(s)	606
EaeI	YGGCCR	2 cut(s)	7, 162
Eam1105I	GACNNNNNGTC	1 cut(s)	606
EciI	GGCGGA	2 cut(s)	272, 764
Eco31I	GGTCTC	2 cut(s)	408, 552
Eco72I	CACGTG	2 cut(s)	401, 834
FaeI	CATG	3 cut(s)	154, 538, 843
FaiI	YATR	7 cut(s)	21, 66, 115, 152, 536, 733, 841
FaqI	GGGAC	1 cut(s)	727
FatI	CATG	3 cut(s)	150, 534, 839
FauI	CCCGC	4 cut(s)	338, 385, 495, 629
FblI	GTMKAC	1 cut(s)	873
Fnu4HI	GCNGC	8 cut(s)	232, 235, 286, 381, 660, 773, 844, 890
FokI	GGATG	3 cut(s)	248, 266, 305
Fsp4HI	GCNGC	8 cut(s)	232, 235, 286, 381, 660, 773, 844, 890
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	8 cut(s)	232, 235, 286, 381, 660, 773, 844, 890
GsaI	CCCAGC	1 cut(s)	648
HaeIII	GGCC	3 cut(s)	9, 164, 455
HapII	CCGG	3 cut(s)	549, 781, 847
HgaI	GACGC	4 cut(s)	431, 482, 558, 651
Hin1I	GRCGYC	3 cut(s)	474, 662, 870
Hin1II	CATG	3 cut(s)	154, 538, 843
HindIII	AAGCTT	1 cut(s)	44
HpaII	CCGG	3 cut(s)	549, 781, 847
HphI	GGTGA	3 cut(s)	187, 268, 712
Hpy166II	GTNNAC	1 cut(s)	874
Hpy188I	TCNGA	6 cut(s)	190, 515, 557, 612, 861, 922
Hpy188III	TCNNGA	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	874
Hpy99I	CGWCG	4 cut(s)	425, 574, 667, 694
HpyAV	CCTTC	2 cut(s)	440, 634
HpyCH4III	ACNGT	2 cut(s)	544, 690
HpyCH4IV	ACGT	5 cut(s)	336, 400, 588, 833, 870
HpyCH4V	TGCA	2 cut(s)	17, 75
HpyF10VI	GCNNNNNNNGC	3 cut(s)	482, 668, 781
HpyF3I	CTNAG	3 cut(s)	410, 611, 818
HpySE526I	ACGT	5 cut(s)	336, 400, 588, 833, 870
Hsp92I	GRCGYC	3 cut(s)	474, 662, 870
Hsp92II	CATG	3 cut(s)	154, 538, 843
KroI	GCCGGC	1 cut(s)	780
KroNI	GCCGGC	1 cut(s)	782
Kzo9I	GATC	4 cut(s)	88, 108, 190, 882
LmnI	GCTCC	1 cut(s)	444
Lsp1109I	GCAGC	2 cut(s)	759, 830
LweI	GCATC	2 cut(s)	246, 561
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	5 cut(s)	336, 400, 588, 833, 870
MaeIII	GTNAC	2 cut(s)	57, 490
MalI	GATC	4 cut(s)	90, 110, 192, 884
MbiI	CCGCTC	1 cut(s)	158
MboI	GATC	4 cut(s)	88, 108, 190, 882
MflI	RGATCY	1 cut(s)	882
MlsI	TGGCCA	2 cut(s)	9, 164
MluI	ACGCGT	1 cut(s)	567
MluNI	TGGCCA	2 cut(s)	9, 164
MmeI	TCCRAC	2 cut(s)	493, 884
Mox20I	TGGCCA	2 cut(s)	9, 164
MroNI	GCCGGC	1 cut(s)	780
MscI	TGGCCA	2 cut(s)	9, 164
Msp20I	TGGCCA	2 cut(s)	9, 164
MspA1I	CMGCKG	1 cut(s)	889
MspI	CCGG	3 cut(s)	549, 781, 847
MvnI	CGCG	1 cut(s)	569
MwoI	GCNNNNNNNGC	3 cut(s)	482, 668, 781
NaeI	GCCGGC	1 cut(s)	782
NdeII	GATC	4 cut(s)	88, 108, 190, 882
NgoMIV	GCCGGC	1 cut(s)	780
NlaIII	CATG	3 cut(s)	154, 538, 843
NspI	RCATGY	1 cut(s)	538
PaeI	GCATGC	1 cut(s)	538
PagI	TCATGA	1 cut(s)	150
PdiI	GCCGGC	1 cut(s)	782
PflFI	GACNNNGTC	1 cut(s)	425
PkrI	GCNGC	8 cut(s)	233, 236, 287, 382, 661, 774, 845, 891
PmaCI	CACGTG	2 cut(s)	401, 834
PmlI	CACGTG	2 cut(s)	401, 834
Ppu21I	YACGTR	3 cut(s)	401, 589, 834
PspCI	CACGTG	2 cut(s)	401, 834
PspFI	CCCAGC	1 cut(s)	644
PspPI	GGNCC	1 cut(s)	454
PstNI	CAGNNNCTG	1 cut(s)	892
PsuI	RGATCY	1 cut(s)	882
PsyI	GACNNNGTC	1 cut(s)	425
SatI	GCNGC	8 cut(s)	232, 235, 286, 381, 660, 773, 844, 890
Sau3AI	GATC	4 cut(s)	88, 108, 190, 882
Sau96I	GGNCC	1 cut(s)	454
SfaNI	GCATC	2 cut(s)	246, 561
SphI	GCATGC	1 cut(s)	538
SspMI	CTAG	1 cut(s)	128
TaaI	ACNGT	2 cut(s)	544, 690
TaiI	ACGT	5 cut(s)	339, 403, 591, 836, 873
TaqI	TCGA	2 cut(s)	420, 665
TaqII	GACCGA	1 cut(s)	878
TauI	GCSGC	6 cut(s)	234, 237, 288, 383, 662, 892
TseI	GCWGC	2 cut(s)	772, 843
TspDTI	ATGAA	1 cut(s)	782
Tth111I	GACNNNGTC	1 cut(s)	425
XceI	RCATGY	1 cut(s)	538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	873
XspI	CTAG	1 cut(s)	128
ZraI	GACGTC	1 cut(s)	871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.