Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0011203

Physical Location & Seq

Genomic Coordinates Forward (+)

1067423 .. 1070440

Gene Structure 3018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1018600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGATTGTGCTGCTAGAACCAAGGTGCGAAGCACCGAACCAAAGCCGAATAACTCCCTCCCCCCAATCTTTCTTAGCCAGCCGTCTCTCCTCCCTCCTCTCCTCCCCCATCCTCTTCTCTCTCACCCTCCACCGCCTCAACTCTCCCCCACACCCACAAGATTGTCCTCATCGCCAACCACGTTATGCTCCCCCTCTTATTATGCGAAGTAGATCAGCACAACCCGCAAGGGCTGCAAATCAGTTATTCGCCACCAACGGCAACCCATTCCACCATCTCAGTCTTCGAAGCCCATCCGGGCACAAAATCATCCAGAACCTTGAAGGGGTAGGTAGGAGATACGGGGGTAGTTTGGGTATAAAGGTTGGATTCCTGAAGAGTCTTCTCCCCGGAATCCAAATACCACCTCTATCTGGGGGATCCAATTCCGGAAGATTAAGGAAATCGATTCCGGATTTTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

16.95

Weight (kDa)

11.48

Isoelectric Point (pI)

63.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02750
fragaria_vesca	FvH4_6g14890
malus_domestica	MD04G1110800.v1.1 MD12G1130000.v1.1 MD15G1018600.v1.1
pyrus_communis	pycom04g10430 pycom12g12610
rosa_chinensis	RchiOBHm_Chr3g0468101
rosa_laevigata	RLG00000024449
rosa_multiflora	Rmu_co8333667.1_g000001 Rmu_sc0003659.1_g000014 Rmu_sc0012651.1_g000009 Rmu_sc0039822.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413050
rosa_rugosa	Rorug03G0092700
rosa_samantha	Rh3AG141100 Rh3BG162600 Rh3CG162400 Rh3DG163100
rosa_wichuraiana	Rw3G013330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	2 cut(s)	431, 454
AciI	CCGC	2 cut(s)	136, 228
AclWI	GGATC	2 cut(s)	417, 430
AcuI	CTGAAG	1 cut(s)	398
AfiI	CCNNNNNNNGG	2 cut(s)	328, 416
AgsI	TTSAA	1 cut(s)	326
Alw26I	GTCTC	1 cut(s)	92
AlwI	GGATC	2 cut(s)	417, 430
Aor13HI	TCCGGA	2 cut(s)	431, 454
ApeKI	GCWGC	2 cut(s)	13, 236
AsuC2I	CCSGG	2 cut(s)	301, 393
AsuHPI	GGTGA	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	289
BaeGI	GKGCMC	1 cut(s)	306
BaeI	ACNNNNGTAYC	2 cut(s)	334, 367
BamHI	GGATCC	1 cut(s)	422
BbsI	GAAGAC	2 cut(s)	278, 377
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	3 cut(s)	119, 285, 304
BceAI	ACGGC	2 cut(s)	69, 277
BcnI	CCSGG	2 cut(s)	301, 393
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	17
BisI	GCNGC	2 cut(s)	14, 237
BlsI	GCNGC	2 cut(s)	15, 238
Bme1390I	CCNGG	2 cut(s)	301, 393
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	2 cut(s)	301, 393
BpiI	GAAGAC	2 cut(s)	278, 377
Bpu14I	TTCGAA	1 cut(s)	289
BpuMI	CCSGG	2 cut(s)	301, 393
Bsa29I	ATCGAT	1 cut(s)	449
BsaJI	CCNNGG	2 cut(s)	23, 391
BsaWI	WCCGGW	2 cut(s)	431, 454
Bsc4I	CCNNNNNNNGG	2 cut(s)	328, 416
BseAI	TCCGGA	2 cut(s)	431, 454
BseCI	ATCGAT	1 cut(s)	449
BseDI	CCNNGG	2 cut(s)	23, 391
BseGI	GGATG	3 cut(s)	111, 296, 312
BseLI	CCNNNNNNNGG	2 cut(s)	328, 416
BseMII	CTCAG	1 cut(s)	295
BseRI	GAGGAG	3 cut(s)	82, 89, 94
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	223
BshVI	ATCGAT	1 cut(s)	449
BsiSI	CCGG	4 cut(s)	300, 393, 432, 455
BslI	CCNNNNNNNGG	2 cut(s)	328, 416
BsmAI	GTCTC	1 cut(s)	92
BsmBI	CGTCTC	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp13I	TCCGGA	2 cut(s)	431, 454
Bsp143I	GATC	2 cut(s)	215, 422
BspACI	CCGC	2 cut(s)	136, 228
BspCNI	CTCAG	1 cut(s)	294
BspDI	ATCGAT	1 cut(s)	449
BspEI	TCCGGA	2 cut(s)	431, 454
BspLI	GGNNCC	1 cut(s)	424
BspPI	GGATC	2 cut(s)	417, 430
BspT104I	TTCGAA	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	23, 391
BssMI	GATC	2 cut(s)	215, 422
BssT1I	CCWWGG	1 cut(s)	23
Bst6I	CTCTTC	2 cut(s)	122, 374
BstAPI	GCANNNNNTGC	1 cut(s)	236
BstBI	TTCGAA	1 cut(s)	289
BstC8I	GCNNGC	1 cut(s)	82
BstDEI	CTNAG	2 cut(s)	76, 281
BstF5I	GGATG	3 cut(s)	111, 296, 312
BstKTI	GATC	2 cut(s)	218, 425
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	2 cut(s)	215, 422
BstMWI	GCNNNNNNNGC	2 cut(s)	227, 236
BstSCI	CCNGG	2 cut(s)	299, 391
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	2 cut(s)	278, 377
BstX2I	RGATCY	1 cut(s)	422
BstYI	RGATCY	1 cut(s)	422
Bsu15I	ATCGAT	1 cut(s)	449
BsuTUI	ATCGAT	1 cut(s)	449
BtgZI	GCGATG	1 cut(s)	158
BtsCI	GGATG	3 cut(s)	111, 296, 312
Cac8I	GCNNGC	1 cut(s)	82
ClaI	ATCGAT	1 cut(s)	449
CviJI	RGCY	5 cut(s)	48, 80, 84, 236, 294
CviKI_1	RGCY	5 cut(s)	48, 80, 84, 236, 294
DdeI	CTNAG	2 cut(s)	76, 281
DpnI	GATC	2 cut(s)	217, 424
DpnII	GATC	2 cut(s)	215, 422
Eam1104I	CTCTTC	2 cut(s)	122, 374
EarI	CTCTTC	2 cut(s)	122, 374
Eco130I	CCWWGG	1 cut(s)	23
Eco57I	CTGAAG	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	23
ErhI	CCWWGG	1 cut(s)	23
Esp3I	CGTCTC	1 cut(s)	92
FaiI	YATR	3 cut(s)	189, 206, 362
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	2 cut(s)	14, 237
FokI	GGATG	3 cut(s)	98, 283, 299
Fsp4HI	GCNGC	2 cut(s)	14, 237
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	2 cut(s)	14, 237
HapII	CCGG	4 cut(s)	300, 393, 432, 455
HinfI	GANTC	4 cut(s)	372, 382, 396, 451
HpaII	CCGG	4 cut(s)	300, 393, 432, 455
HphI	GGTGA	1 cut(s)	118
Hpy188III	TCNNGA	4 cut(s)	316, 376, 432, 455
HpyAV	CCTTC	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	2 cut(s)	227, 236
HpyF3I	CTNAG	2 cut(s)	76, 281
HpySE526I	ACGT	1 cut(s)	184
Kpn2I	TCCGGA	2 cut(s)	431, 454
Kzo9I	GATC	2 cut(s)	215, 422
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	7 cut(s)	94, 313, 329, 389, 402, 406, 445
Lsp1109I	GCAGC	1 cut(s)	223
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	184
MalI	GATC	2 cut(s)	217, 424
MboI	GATC	2 cut(s)	215, 422
MboII	GAAGA	5 cut(s)	109, 278, 377, 391, 447
MflI	RGATCY	1 cut(s)	422
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	1 cut(s)	427
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	349
MroI	TCCGGA	2 cut(s)	431, 454
MseI	TTAA	2 cut(s)	440, 462
MspI	CCGG	4 cut(s)	300, 393, 432, 455
MspR9I	CCNGG	2 cut(s)	301, 393
MwoI	GCNNNNNNNGC	2 cut(s)	227, 236
NciI	CCSGG	2 cut(s)	301, 393
NdeII	GATC	2 cut(s)	215, 422
NlaIV	GGNNCC	1 cut(s)	424
NspV	TTCGAA	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	181
PfeI	GAWTC	3 cut(s)	372, 396, 451
PkrI	GCNGC	2 cut(s)	15, 238
PleI	GAGTC	1 cut(s)	390
PpsI	GAGTC	1 cut(s)	390
PspN4I	GGNNCC	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	422
SaqAI	TTAA	2 cut(s)	440, 462
SatI	GCNGC	2 cut(s)	14, 237
Sau3AI	GATC	2 cut(s)	215, 422
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	2 cut(s)	301, 393
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	6 cut(s)	29, 187, 324, 337, 369, 412
SfuI	TTCGAA	1 cut(s)	289
Sse9I	AATT	1 cut(s)	427
SsiI	CCGC	2 cut(s)	136, 228
SspMI	CTAG	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	299, 391
StyI	CCWWGG	1 cut(s)	23
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	2 cut(s)	289, 449
TasI	AATT	1 cut(s)	427
TfiI	GAWTC	3 cut(s)	372, 396, 451
Tru1I	TTAA	2 cut(s)	440, 462
Tru9I	TTAA	2 cut(s)	440, 462
TseI	GCWGC	2 cut(s)	13, 236
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.