Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011203

Physical Location & Seq

Genomic Coordinates Reverse (-)

35489961 .. 35490766

Gene Structure 806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGGCGCTCTGGCCACGCTCTCACCTCCCCAACTCTCCGATCTCACTCATACCCTCCTCTCCCTCTCCCACCACCACCGCCGCCGCATCTCCTCCCTCCTCTCCTCTCCCATCCTCTTTGCCCTCACCATCCGCCGCCTCAACTCCCTCTCCCTCCACCACAAGACCCTCCTCATCGCCCGCCACGTCATCTCCTCCCTCCACCACCTCGCCCTCCACTTCCAGCCAGCCGCCAAAGCCCCACCGCCACGCGTCAAGCTGAGAGACCTCGACGCCGTCCTCCTCCTCCTCTTGCTCTGCGAGGCCCACCAGCACGACCCTGACGCCCTCCAAGCCCCCACCGCGAAATGGCGGGAAGTTCTCGGCAAGTTCTACTGTGACACCATGTTAACGTTTTGGCGGGAAGGCTGGAAGGAAGTGCCGGCGGCGAAAGAGGTGGTGGTGGCGCTGCCGTCGGTGGAGGTGAGAAGTGGTGGCGGCGGGCCCAAGGAGTGCGTGATATGCAAGGAAGAGATGGCGGAGAACAGAGATGTTTGCGAGCTGCCGTGCCGGCATTTGTTTCATTGGGTGTGTATTTTGCGGTGGCTCAGCAAGAGGAACACGTGTCCCTGCTGCCGCTTTGGGCTTCCGACGGATGATGTGTACGGCGAGATCCAGCGGCTGTGGAACGTTTTGGATAATGTGGCTTCGGAGAAGGGTTTAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009501 GO:0009536 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

235

Amino Acids

26.51

Weight (kDa)

8.71

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	164 - 206	4.4e-13	Ring finger domain
zf-RING_11	PF17123	164 - 192	5.4e-07	RING-like zinc finger
zf-rbx1	PF12678	164 - 206	1.6e-06	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	164 - 205	4.2e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02750
fragaria_vesca	FvH4_6g14890
malus_domestica	MD04G1110800.v1.1 MD12G1130000.v1.1 MD15G1018600.v1.1
pyrus_communis	pycom04g10430 pycom12g12610
rosa_chinensis	RchiOBHm_Chr3g0468101
rosa_laevigata	RLG00000024449
rosa_multiflora	Rmu_co8333667.1_g000001 Rmu_sc0003659.1_g000014 Rmu_sc0012651.1_g000009 Rmu_sc0039822.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413050
rosa_rugosa	Rorug03G0092700
rosa_samantha	Rh3AG141100 Rh3BG162600 Rh3CG162400 Rh3DG163100
rosa_wichuraiana	Rw3G013330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	252, 344
AclI	AACGTT	2 cut(s)	392, 669
AclWI	GGATC	1 cut(s)	646
AcoI	YGGCCR	1 cut(s)	12
AcvI	CACGTG	1 cut(s)	603
AcyI	GRCGYC	2 cut(s)	273, 324
AfaI	GTAC	1 cut(s)	644
AfiI	CCNNNNNNNGG	1 cut(s)	348
AflIII	ACRYGT	3 cut(s)	250, 600, 602
AjiI	CACGTC	1 cut(s)	187
AluBI	AGCT	2 cut(s)	259, 541
AluI	AGCT	2 cut(s)	259, 541
Alw26I	GTCTC	1 cut(s)	258
AlwI	GGATC	1 cut(s)	646
AlwNI	CAGNNNCTG	1 cut(s)	661
AoxI	GGCC	3 cut(s)	12, 303, 482
ApaI	GGGCCC	1 cut(s)	486
ApeKI	GCWGC	3 cut(s)	448, 541, 612
AspLEI	GCGC	2 cut(s)	8, 448
AspS9I	GGNCC	3 cut(s)	304, 482, 483
AsuHPI	GGTGA	3 cut(s)	15, 118, 475
BaeGI	GKGCMC	1 cut(s)	486
BalI	TGGCCA	1 cut(s)	14
BanII	GRGCYC	1 cut(s)	486
BbrPI	CACGTG	1 cut(s)	603
BbvI	GCAGC	3 cut(s)	435, 528, 599
BccI	CCATC	3 cut(s)	119, 137, 508
BceAI	ACGGC	4 cut(s)	260, 436, 529, 661
BcoDI	GTCTC	1 cut(s)	258
BfoI	RGCGCY	2 cut(s)	9, 449
BglI	GCCNNNNNGGC	1 cut(s)	550
BlpI	GCTNAGC	1 cut(s)	587
BmgBI	CACGTC	1 cut(s)	187
BmgT120I	GGNCC	3 cut(s)	304, 482, 483
BmiI	GGNNCC	1 cut(s)	484
BmsI	GCATC	1 cut(s)	96
Bpu1102I	GCTNAGC	1 cut(s)	587
BsaAI	YACGTR	1 cut(s)	603
BsaHI	GRCGYC	2 cut(s)	273, 324
BsaI	GGTCTC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	486
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	348
Bse118I	RCCGGY	2 cut(s)	421, 549
BseDI	CCNNGG	1 cut(s)	486
BseGI	GGATG	3 cut(s)	111, 129, 640
BseLI	CCNNNNNNNGG	1 cut(s)	348
BseMII	CTCAG	2 cut(s)	251, 601
BseRI	GAGGAG	9 cut(s)	47, 82, 89, 94, 161, 184, 272, 275, 278
BseSI	GKGCMC	1 cut(s)	486
BseXI	GCAGC	3 cut(s)	435, 528, 599
Bsh1236I	CGCG	2 cut(s)	252, 344
BshFI	GGCC	3 cut(s)	14, 305, 484
BsiSI	CCGG	2 cut(s)	422, 550
BslFI	GGGAC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	258
BsmFI	GGGAC	1 cut(s)	591
BsnI	GGCC	3 cut(s)	14, 305, 484
Bso31I	GGTCTC	1 cut(s)	258
Bsp120I	GGGCCC	1 cut(s)	482
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	2 cut(s)	40, 651
Bsp1720I	GCTNAGC	1 cut(s)	587
BspANI	GGCC	3 cut(s)	14, 305, 484
BspCNI	CTCAG	2 cut(s)	252, 600
BspFNI	CGCG	2 cut(s)	252, 344
BspLI	GGNNCC	1 cut(s)	484
BspPI	GGATC	1 cut(s)	646
BspTNI	GGTCTC	1 cut(s)	258
BsrFI	RCCGGY	2 cut(s)	421, 549
BssAI	RCCGGY	2 cut(s)	421, 549
BssECI	CCNNGG	1 cut(s)	486
BssMI	GATC	2 cut(s)	40, 651
BssNI	GRCGYC	2 cut(s)	273, 324
BssT1I	CCWWGG	1 cut(s)	486
Bst4CI	ACNGT	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	504
BstACI	GRCGYC	2 cut(s)	273, 324
BstBAI	YACGTR	1 cut(s)	603
BstC8I	GCNNGC	6 cut(s)	181, 228, 423, 482, 539, 551
BstDEI	CTNAG	2 cut(s)	260, 587
BstF5I	GGATG	3 cut(s)	111, 129, 640
BstFNI	CGCG	2 cut(s)	252, 344
BstH2I	RGCGCY	2 cut(s)	9, 449
BstHHI	GCGC	2 cut(s)	8, 448
BstKTI	GATC	2 cut(s)	43, 654
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	2 cut(s)	40, 651
BstMWI	GCNNNNNNNGC	5 cut(s)	236, 332, 341, 501, 550
BstSLI	GKGCMC	1 cut(s)	486
BstUI	CGCG	2 cut(s)	252, 344
BstV1I	GCAGC	3 cut(s)	435, 528, 599
BstX2I	RGATCY	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	651
BsuRI	GGCC	3 cut(s)	14, 305, 484
BtgZI	GCGATG	1 cut(s)	160
BtrI	CACGTC	1 cut(s)	187
BtsCI	GGATG	3 cut(s)	111, 129, 640
Cac8I	GCNNGC	6 cut(s)	181, 228, 423, 482, 539, 551
CaiI	CAGNNNCTG	1 cut(s)	661
CfoI	GCGC	2 cut(s)	8, 448
Cfr10I	RCCGGY	2 cut(s)	421, 549
Cfr13I	GGNCC	3 cut(s)	304, 482, 483
CseI	GACGC	3 cut(s)	241, 281, 332
Csp6I	GTAC	1 cut(s)	643
CviAII	CATG	1 cut(s)	385
CviQI	GTAC	1 cut(s)	643
DdeI	CTNAG	2 cut(s)	260, 587
DpnI	GATC	2 cut(s)	42, 653
DpnII	GATC	2 cut(s)	40, 651
EaeI	YGGCCR	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	504
EarI	CTCTTC	1 cut(s)	504
EciI	GGCGGA	2 cut(s)	122, 533
Eco130I	CCWWGG	1 cut(s)	486
Eco24I	GRGCYC	1 cut(s)	486
Eco31I	GGTCTC	1 cut(s)	258
Eco72I	CACGTG	1 cut(s)	603
EcoT14I	CCWWGG	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	1 cut(s)	388
FaiI	YATR	3 cut(s)	51, 386, 502
FaqI	GGGAC	1 cut(s)	591
FatI	CATG	1 cut(s)	384
FauI	CCCGC	4 cut(s)	188, 345, 393, 473
FokI	GGATG	3 cut(s)	98, 116, 647
FriOI	GRGCYC	1 cut(s)	486
GlaI	GCGC	2 cut(s)	7, 447
HaeII	RGCGCY	2 cut(s)	9, 449
HaeIII	GGCC	3 cut(s)	14, 305, 484
HapII	CCGG	2 cut(s)	422, 550
HgaI	GACGC	3 cut(s)	241, 281, 332
HhaI	GCGC	2 cut(s)	8, 448
Hin1I	GRCGYC	2 cut(s)	273, 324
Hin1II	CATG	1 cut(s)	388
Hin6I	GCGC	2 cut(s)	6, 446
HinP1I	GCGC	2 cut(s)	6, 446
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HpaI	GTTAAC	1 cut(s)	390
HpaII	CCGG	2 cut(s)	422, 550
HphI	GGTGA	3 cut(s)	15, 118, 475
Hpy166II	GTNNAC	2 cut(s)	390, 643
Hpy188I	TCNGA	3 cut(s)	40, 630, 691
Hpy8I	GTNNAC	2 cut(s)	390, 643
Hpy99I	CGWCG	3 cut(s)	275, 457, 634
HpyAV	CCTTC	3 cut(s)	398, 406, 688
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4IV	ACGT	4 cut(s)	186, 392, 602, 669
HpyCH4V	TGCA	1 cut(s)	504
HpyF10VI	GCNNNNNNNGC	5 cut(s)	236, 332, 341, 501, 550
HpyF3I	CTNAG	2 cut(s)	260, 587
HpySE526I	ACGT	4 cut(s)	186, 392, 602, 669
Hsp92I	GRCGYC	2 cut(s)	273, 324
Hsp92II	CATG	1 cut(s)	388
HspAI	GCGC	2 cut(s)	6, 446
KroI	GCCGGC	2 cut(s)	421, 549
KroNI	GCCGGC	2 cut(s)	423, 551
KspAI	GTTAAC	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	40, 651
LpnPI	CCDG	9 cut(s)	236, 240, 323, 333, 394, 435, 563, 622, 668
Lsp1109I	GCAGC	3 cut(s)	435, 528, 599
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	4 cut(s)	186, 392, 602, 669
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	42, 653
MboI	GATC	2 cut(s)	40, 651
MboII	GAAGA	1 cut(s)	521
MflI	RGATCY	1 cut(s)	651
MhlI	GDGCHC	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	14
MluI	ACGCGT	1 cut(s)	250
MluNI	TGGCCA	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	653
Mox20I	TGGCCA	1 cut(s)	14
MroNI	GCCGGC	2 cut(s)	421, 549
MscI	TGGCCA	1 cut(s)	14
MseI	TTAA	2 cut(s)	389, 706
Msp20I	TGGCCA	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	658
MspI	CCGG	2 cut(s)	422, 550
MvnI	CGCG	2 cut(s)	252, 344
MwoI	GCNNNNNNNGC	5 cut(s)	236, 332, 341, 501, 550
NaeI	GCCGGC	2 cut(s)	423, 551
NdeII	GATC	2 cut(s)	40, 651
NgoMIV	GCCGGC	2 cut(s)	421, 549
NlaIII	CATG	1 cut(s)	388
NlaIV	GGNNCC	1 cut(s)	484
NmeAIII	GCCGAG	1 cut(s)	342
NmuCI	GTSAC	1 cut(s)	377
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdiI	GCCGGC	2 cut(s)	423, 551
PflFI	GACNNNGTC	1 cut(s)	275
PmaCI	CACGTG	1 cut(s)	603
PmlI	CACGTG	1 cut(s)	603
Ppu21I	YACGTR	1 cut(s)	603
Psp1406I	AACGTT	2 cut(s)	392, 669
PspCI	CACGTG	1 cut(s)	603
PspN4I	GGNNCC	1 cut(s)	484
PspOMI	GGGCCC	1 cut(s)	482
PspPI	GGNCC	3 cut(s)	304, 482, 483
PstNI	CAGNNNCTG	1 cut(s)	661
PsuI	RGATCY	1 cut(s)	651
PsyI	GACNNNGTC	1 cut(s)	275
RsaI	GTAC	1 cut(s)	644
RsaNI	GTAC	1 cut(s)	643
SaqAI	TTAA	2 cut(s)	389, 706
Sau3AI	GATC	2 cut(s)	40, 651
Sau96I	GGNCC	3 cut(s)	304, 482, 483
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	1 cut(s)	96
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	1 cut(s)	377
TaiI	ACGT	4 cut(s)	189, 395, 605, 672
TaqI	TCGA	1 cut(s)	270
TauI	GCSGC	8 cut(s)	84, 87, 138, 233, 428, 480, 618, 661
Tru1I	TTAA	2 cut(s)	389, 706
Tru9I	TTAA	2 cut(s)	389, 706
TseFI	GTSAC	1 cut(s)	377
TseI	GCWGC	3 cut(s)	448, 541, 612
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	551
TspGWI	ACGGA	1 cut(s)	647
Tth111I	GACNNNGTC	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.