Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0011203

Physical Location & Seq

Genomic Coordinates Reverse (-)

13156272 .. 13157213

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

ATGGCCAAATTAGTCCAAACGAAAATTCACATAAAAACCCATGACATTCCTCAAAACTTTTTTCCACGCTCCATAAAAGAGTTAAAAGCGACAGTCCACAAAGCACACGATCCCATGATGGAAGAAACAACAGGAGCAACCGCAACCATCATGGCTGCTCTGGCCACCCTCACCCCACCCCAACTCTCAGATCTCACCCGCACCATCCTCTCCCACACCCACCACCACCGCTGCCGTCTCTCCTCCCTCCTCTCCTCCCCCATCCTCTTCTCTCTCACCCTCCACCGCCTCAACTGCCTCCCTCTCGCCCACAAGACTCTCCTCATCGCCAACCACCTCCTCTCCTCCCTCCACCACCTTACACTCCACTTCCAACCCTACACCAATCTACCGCCGCGGCAGGCCAGACAGAGAGACCTCGACGCCGTCCTGCTCCTCCTCTTGCTCTGCGAAGTACACCAGCACAACCCTCAAGCCCTCGAAGCACCAACTGTAAAATGGCGCGAAATTCTAAGCGATTTGTACTCCGACAACATGTTAACAGTTTCCGGCATTGGGGTGTACAACAGGTCGGCTTTGGTGTCTTATATTGAGGTGCTGACAAGGTGCTTGAGATTCGTCAACGTGATGGGTTTTTGCTGTGGCGGGAAGGCAGGGAGAGAAGTGGCGGCATCGCCAGCAGTCGTGGTGTCGCTGCCGTCAGTGGTGGTAAGCGGTGGAGGGAGCGAGTGCGTGATATGTAAAGAGGAGATGAGAGAAGACAGAGATGTGTGTGAGCTGCCGTGCAGGCATTTGTTTCATTGGATGTGTATTTTGCGGTGGCTGAGGAAGAGGAACACTTGTCCATGCTGCCGGTTTACGCTACCCACGGAAGATGTGTTCGGGGAGATCCAACGGCTGTGGGAGATTTTGGTTAAGATAGGCGAGAAGGAATTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009501 GO:0009536 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

314

Amino Acids

35.34

Weight (kDa)

8.65

Isoelectric Point (pI)

47.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	243 - 285	2.1e-13	Ring finger domain
zf-rbx1	PF12678	243 - 285	6.7e-08	RING-H2 zinc finger domain
zf-C3HC4_2	PF13923	243 - 284	9.1e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_11	PF17123	243 - 271	1.7e-06	RING-like zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02750
fragaria_vesca	FvH4_6g14890
malus_domestica	MD04G1110800.v1.1 MD12G1130000.v1.1 MD15G1018600.v1.1
pyrus_communis	pycom04g10430 pycom12g12610
rosa_chinensis	RchiOBHm_Chr3g0468101
rosa_laevigata	RLG00000024449
rosa_multiflora	Rmu_co8333667.1_g000001 Rmu_sc0003659.1_g000014 Rmu_sc0012651.1_g000009 Rmu_sc0039822.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413050
rosa_rugosa	Rorug03G0092700
rosa_samantha	Rh3AG141100 Rh3BG162600 Rh3CG162400 Rh3DG163100
rosa_wichuraiana	Rw3G013330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	397, 504
AclWI	GGATC	2 cut(s)	104, 883
AcoI	YGGCCR	2 cut(s)	3, 162
AcsI	RAATTY	2 cut(s)	24, 507
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	3 cut(s)	456, 524, 563
AfiI	CCNNNNNNNGG	1 cut(s)	555
AflIII	ACRYGT	1 cut(s)	534
AjuI	GAANNNNNNNTTGG	2 cut(s)	9, 41
AloI	GAACNNNNNNTCC	2 cut(s)	863, 895
AluBI	AGCT	2 cut(s)	778, 938
AluI	AGCT	2 cut(s)	778, 938
Alw26I	GTCTC	2 cut(s)	242, 408
AlwI	GGATC	2 cut(s)	104, 883
AoxI	GGCC	3 cut(s)	3, 162, 402
ApeKI	GCWGC	5 cut(s)	155, 231, 694, 778, 849
ApoI	RAATTY	2 cut(s)	24, 507
AspLEI	GCGC	1 cut(s)	504
AsuHPI	GGTGA	3 cut(s)	163, 187, 268
BalI	TGGCCA	2 cut(s)	5, 164
BbsI	GAAGAC	1 cut(s)	765
BbvCI	CCTCAGC	1 cut(s)	824
BbvI	GCAGC	5 cut(s)	142, 218, 681, 765, 836
BccI	CCATC	5 cut(s)	112, 155, 212, 269, 622
BceAI	ACGGC	5 cut(s)	219, 410, 682, 766, 911
BcoDI	GTCTC	2 cut(s)	242, 408
BglI	GCCNNNNNGGC	1 cut(s)	787
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	8 cut(s)	156, 232, 395, 398, 669, 695, 779, 850
BlsI	GCNGC	8 cut(s)	157, 233, 396, 399, 670, 696, 780, 851
BmsI	GCATC	1 cut(s)	680
BpiI	GAAGAC	1 cut(s)	765
Bpu10I	CCTNAGC	1 cut(s)	824
BpuEI	CTTGAG	2 cut(s)	456, 631
BsaHI	GRCGYC	1 cut(s)	423
BsaI	GGTCTC	1 cut(s)	408
BsaJI	CCNNGG	2 cut(s)	395, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	555
Bse118I	RCCGGY	1 cut(s)	852
BseDI	CCNNGG	2 cut(s)	395, 867
BseGI	GGATG	3 cut(s)	204, 261, 810
BseLI	CCNNNNNNNGG	1 cut(s)	555
BseMII	CTCAG	2 cut(s)	201, 815
BseRI	GAGGAG	9 cut(s)	232, 239, 244, 311, 329, 334, 425, 428, 761
BseXI	GCAGC	5 cut(s)	142, 218, 681, 765, 836
BsgI	GTGCAG	1 cut(s)	805
Bsh1236I	CGCG	2 cut(s)	397, 504
BshFI	GGCC	3 cut(s)	5, 164, 404
BsiSI	CCGG	2 cut(s)	549, 853
BslI	CCNNNNNNNGG	1 cut(s)	555
BsmAI	GTCTC	2 cut(s)	242, 408
BsmBI	CGTCTC	1 cut(s)	242
BsnI	GGCC	3 cut(s)	5, 164, 404
Bso31I	GGTCTC	1 cut(s)	408
Bsp1407I	TGTACA	1 cut(s)	561
Bsp143I	GATC	3 cut(s)	109, 190, 888
BspANI	GGCC	3 cut(s)	5, 164, 404
BspCNI	CTCAG	2 cut(s)	200, 816
BspFNI	CGCG	2 cut(s)	397, 504
BspPI	GGATC	2 cut(s)	104, 883
BspTNI	GGTCTC	1 cut(s)	408
BsrFI	RCCGGY	1 cut(s)	852
BsrGI	TGTACA	1 cut(s)	561
BssAI	RCCGGY	1 cut(s)	852
BssECI	CCNNGG	2 cut(s)	395, 867
BssMI	GATC	3 cut(s)	109, 190, 888
BssNI	GRCGYC	1 cut(s)	423
Bst4CI	ACNGT	3 cut(s)	94, 493, 544
Bst6I	CTCTTC	2 cut(s)	272, 824
BstACI	GRCGYC	1 cut(s)	423
BstAUI	TGTACA	1 cut(s)	561
BstC8I	GCNNGC	3 cut(s)	402, 678, 788
BstDEI	CTNAG	4 cut(s)	187, 512, 824, 939
BstDSI	CCRYGG	2 cut(s)	395, 867
BstF5I	GGATG	3 cut(s)	204, 261, 810
BstFNI	CGCG	2 cut(s)	397, 504
BstHHI	GCGC	1 cut(s)	504
BstKTI	GATC	3 cut(s)	112, 193, 891
BstMAI	GTCTC	2 cut(s)	242, 408
BstMBI	GATC	3 cut(s)	109, 190, 888
BstMWI	GCNNNNNNNGC	5 cut(s)	161, 294, 482, 677, 787
BstNSI	RCATGY	1 cut(s)	538
BstUI	CGCG	2 cut(s)	397, 504
BstV1I	GCAGC	5 cut(s)	142, 218, 681, 765, 836
BstV2I	GAAGAC	1 cut(s)	765
BstX2I	RGATCY	2 cut(s)	190, 888
BstYI	RGATCY	2 cut(s)	190, 888
BsuRI	GGCC	3 cut(s)	5, 164, 404
BtgI	CCRYGG	2 cut(s)	395, 867
BtgZI	GCGATG	2 cut(s)	310, 657
BtsCI	GGATG	3 cut(s)	204, 261, 810
BtsIMutI	CAGTG	1 cut(s)	708
Cac8I	GCNNGC	3 cut(s)	402, 678, 788
CfoI	GCGC	1 cut(s)	504
Cfr10I	RCCGGY	1 cut(s)	852
Cfr42I	CCGCGG	1 cut(s)	398
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	3 cut(s)	455, 523, 562
CspCI	CAANNNNNGTGG	2 cut(s)	881, 916
CviAII	CATG	5 cut(s)	41, 115, 151, 535, 846
CviQI	GTAC	3 cut(s)	455, 523, 562
DdeI	CTNAG	4 cut(s)	187, 512, 824, 939
DpnI	GATC	3 cut(s)	111, 192, 890
DpnII	GATC	3 cut(s)	109, 190, 888
EaeI	YGGCCR	2 cut(s)	3, 162
Eam1104I	CTCTTC	2 cut(s)	272, 824
EarI	CTCTTC	2 cut(s)	272, 824
Eco31I	GGTCTC	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	242
FaeI	CATG	5 cut(s)	44, 118, 154, 538, 849
FaiI	YATR	9 cut(s)	32, 42, 74, 116, 152, 536, 588, 739, 847
FatI	CATG	5 cut(s)	40, 114, 150, 534, 845
FauI	CCCGC	2 cut(s)	206, 638
Fnu4HI	GCNGC	8 cut(s)	156, 232, 395, 398, 669, 695, 779, 850
FokI	GGATG	3 cut(s)	191, 248, 817
Fsp4HI	GCNGC	8 cut(s)	156, 232, 395, 398, 669, 695, 779, 850
GlaI	GCGC	1 cut(s)	503
GluI	GCNGC	8 cut(s)	156, 232, 395, 398, 669, 695, 779, 850
HaeIII	GGCC	3 cut(s)	5, 164, 404
HapII	CCGG	2 cut(s)	549, 853
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	1 cut(s)	504
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	5 cut(s)	44, 118, 154, 538, 849
Hin6I	GCGC	1 cut(s)	502
HinP1I	GCGC	1 cut(s)	502
HincII	GTYRAC	2 cut(s)	540, 622
HindII	GTYRAC	2 cut(s)	540, 622
HinfI	GANTC	2 cut(s)	316, 615
HpaI	GTTAAC	1 cut(s)	540
HpaII	CCGG	2 cut(s)	549, 853
HphI	GGTGA	3 cut(s)	163, 187, 268
Hpy166II	GTNNAC	6 cut(s)	97, 457, 540, 562, 622, 858
Hpy188I	TCNGA	2 cut(s)	190, 529
Hpy8I	GTNNAC	6 cut(s)	97, 457, 540, 562, 622, 858
Hpy99I	CGWCG	1 cut(s)	425
HpyAV	CCTTC	2 cut(s)	643, 922
HpyCH4III	ACNGT	3 cut(s)	94, 493, 544
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	1 cut(s)	786
HpyF10VI	GCNNNNNNNGC	5 cut(s)	161, 294, 482, 677, 787
HpyF3I	CTNAG	4 cut(s)	187, 512, 824, 939
HpySE526I	ACGT	1 cut(s)	624
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	5 cut(s)	44, 118, 154, 538, 849
HspAI	GCGC	1 cut(s)	502
KspAI	GTTAAC	1 cut(s)	540
KspI	CCGCGG	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	109, 190, 888
LmnI	GCTCC	4 cut(s)	74, 134, 438, 723
Lsp1109I	GCAGC	5 cut(s)	142, 218, 681, 765, 836
LweI	GCATC	1 cut(s)	680
MaeII	ACGT	1 cut(s)	624
MalI	GATC	3 cut(s)	111, 192, 890
MboI	GATC	3 cut(s)	109, 190, 888
MboII	GAAGA	5 cut(s)	134, 259, 770, 841, 884
MflI	RGATCY	2 cut(s)	190, 888
MlsI	TGGCCA	2 cut(s)	5, 164
MluCI	AATT	4 cut(s)	8, 24, 507, 932
MluNI	TGGCCA	2 cut(s)	5, 164
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	3 cut(s)	397, 552, 916
Mox20I	TGGCCA	2 cut(s)	5, 164
MscI	TGGCCA	2 cut(s)	5, 164
MseI	TTAA	3 cut(s)	83, 539, 915
MslI	CAYNNNNRTG	1 cut(s)	557
Msp20I	TGGCCA	2 cut(s)	5, 164
MspA1I	CMGCKG	2 cut(s)	231, 397
MspI	CCGG	2 cut(s)	549, 853
MvnI	CGCG	2 cut(s)	397, 504
MwoI	GCNNNNNNNGC	5 cut(s)	161, 294, 482, 677, 787
NdeII	GATC	3 cut(s)	109, 190, 888
NlaIII	CATG	5 cut(s)	44, 118, 154, 538, 849
NspI	RCATGY	1 cut(s)	538
PciI	ACATGT	1 cut(s)	534
PfeI	GAWTC	1 cut(s)	615
PflFI	GACNNNGTC	1 cut(s)	425
PkrI	GCNGC	8 cut(s)	157, 233, 396, 399, 670, 696, 780, 851
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PscI	ACATGT	1 cut(s)	534
PsuI	RGATCY	2 cut(s)	190, 888
PsyI	GACNNNGTC	1 cut(s)	425
RsaI	GTAC	3 cut(s)	456, 524, 563
RsaNI	GTAC	3 cut(s)	455, 523, 562
RseI	CAYNNNNRTG	1 cut(s)	557
SacII	CCGCGG	1 cut(s)	398
SaqAI	TTAA	3 cut(s)	83, 539, 915
SatI	GCNGC	8 cut(s)	156, 232, 395, 398, 669, 695, 779, 850
Sau3AI	GATC	3 cut(s)	109, 190, 888
SchI	GAGTC	1 cut(s)	310
SetI	ASST	9 cut(s)	339, 360, 420, 572, 597, 608, 627, 780, 940
SfaNI	GCATC	1 cut(s)	680
Sfr303I	CCGCGG	1 cut(s)	398
SgrBI	CCGCGG	1 cut(s)	398
SmiMI	CAYNNNNRTG	1 cut(s)	557
SmlI	CTYRAG	2 cut(s)	471, 610
SmoI	CTYRAG	2 cut(s)	471, 610
Sse9I	AATT	4 cut(s)	8, 24, 507, 932
TaaI	ACNGT	3 cut(s)	94, 493, 544
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	2 cut(s)	420, 480
TasI	AATT	4 cut(s)	8, 24, 507, 932
TatI	WGTACW	3 cut(s)	454, 522, 561
TauI	GCSGC	3 cut(s)	397, 400, 671
TfiI	GAWTC	1 cut(s)	615
Tru1I	TTAA	3 cut(s)	83, 539, 915
Tru9I	TTAA	3 cut(s)	83, 539, 915
TscAI	CASTG	1 cut(s)	708
TseI	GCWGC	5 cut(s)	155, 231, 694, 778, 849
TspDTI	ATGAA	1 cut(s)	788
TspGWI	ACGGA	1 cut(s)	884
TspRI	CASTG	1 cut(s)	708
Tth111I	GACNNNGTC	1 cut(s)	425
XapI	RAATTY	2 cut(s)	24, 507
XceI	RCATGY	1 cut(s)	538
XcmI	CCANNNNNNNNNTGG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.