Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039822.1

Orthogroup ID

OG0011203

Physical Location & Seq

Genomic Coordinates Reverse (-)

139 .. 561

Gene Structure 423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039822.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgttaacggtttccggcatcggggcccaaaacgcgtcggttttggtttcgtacgttgaaatgctgacgaggtgtttgaggttcgttagtgcgatggagagttgtagttttggcgggaaggctggaagggaagtgccggcggcgaaatcggtggtggtggcgctgccgtcggtagaggtgagaagtggtggcggcgggcccaaggagtgcgtgatatgtaaggaggagatggcggagaacagagatgtgtgcgagatgccgtgccggcatttgtttcattgggtgtgtattttgcggtggctgagcaagaggaacacgtgtccctgctgccgctttgcgcttccgacggatgatgtgtacggtgagatccagcggctgtggaacgttttggataatgtggcttcggagaagggtttagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009501 GO:0009536 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

140

Amino Acids

15.37

Weight (kDa)

7.48

Isoelectric Point (pI)

51.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02750
fragaria_vesca	FvH4_6g14890
malus_domestica	MD04G1110800.v1.1 MD12G1130000.v1.1 MD15G1018600.v1.1
pyrus_communis	pycom04g10430 pycom12g12610
rosa_chinensis	RchiOBHm_Chr3g0468101
rosa_laevigata	RLG00000024449
rosa_multiflora	Rmu_co8333667.1_g000001 Rmu_sc0003659.1_g000014 Rmu_sc0012651.1_g000009 Rmu_sc0039822.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413050
rosa_rugosa	Rorug03G0092700
rosa_samantha	Rh3AG141100 Rh3BG162600 Rh3CG162400 Rh3DG163100
rosa_wichuraiana	Rw3G013330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	35
AciI	CCGC	8 cut(s)	114, 140, 192, 195, 233, 295, 331, 373
AclI	AACGTT	1 cut(s)	384
AclWI	GGATC	1 cut(s)	361
AcvI	CACGTG	1 cut(s)	318
AfaI	GTAC	2 cut(s)	53, 359
AfiI	CCNNNNNNNGG	1 cut(s)	21
AflIII	ACRYGT	3 cut(s)	33, 315, 317
AgsI	TTSAA	1 cut(s)	59
AlwI	GGATC	1 cut(s)	361
AlwNI	CAGNNNCTG	1 cut(s)	376
AoxI	GGCC	2 cut(s)	24, 197
ApaI	GGGCCC	2 cut(s)	28, 201
ApeKI	GCWGC	2 cut(s)	163, 327
ArsI	GACNNNNNNTTYG	2 cut(s)	58, 90
AspLEI	GCGC	2 cut(s)	163, 340
AspS9I	GGNCC	4 cut(s)	24, 25, 197, 198
AsuHPI	GGTGA	2 cut(s)	190, 374
BaeGI	GKGCMC	2 cut(s)	28, 201
BanII	GRGCYC	2 cut(s)	28, 201
BbrPI	CACGTG	1 cut(s)	318
BbvI	GCAGC	2 cut(s)	150, 314
BccI	CCATC	2 cut(s)	88, 223
BceAI	ACGGC	2 cut(s)	151, 244
BfoI	RGCGCY	1 cut(s)	164
BglI	GCCNNNNNGGC	1 cut(s)	265
BisI	GCNGC	6 cut(s)	141, 164, 193, 328, 331, 374
BlpI	GCTNAGC	1 cut(s)	302
BlsI	GCNGC	6 cut(s)	142, 165, 194, 329, 332, 375
BmgT120I	GGNCC	4 cut(s)	24, 25, 197, 198
BmiI	GGNNCC	3 cut(s)	25, 26, 199
BmsI	GCATC	2 cut(s)	27, 246
Bpu1102I	GCTNAGC	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	201
Bsc4I	CCNNNNNNNGG	1 cut(s)	21
Bse118I	RCCGGY	2 cut(s)	136, 264
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	21
BseMII	CTCAG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	239
BseSI	GKGCMC	2 cut(s)	28, 201
BseXI	GCAGC	2 cut(s)	150, 314
Bsh1236I	CGCG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	26, 199
BsiSI	CCGG	3 cut(s)	15, 137, 265
BsiWI	CGTACG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	306
BslI	CCNNNNNNNGG	1 cut(s)	21
BsmFI	GGGAC	1 cut(s)	306
BsnI	GGCC	2 cut(s)	26, 199
Bsp120I	GGGCCC	2 cut(s)	24, 197
Bsp1286I	GDGCHC	2 cut(s)	28, 201
Bsp143I	GATC	1 cut(s)	366
Bsp1720I	GCTNAGC	1 cut(s)	302
BspACI	CCGC	8 cut(s)	114, 140, 192, 195, 233, 295, 331, 373
BspANI	GGCC	2 cut(s)	26, 199
BspCNI	CTCAG	1 cut(s)	294
BspFNI	CGCG	1 cut(s)	35
BspLI	GGNNCC	3 cut(s)	25, 26, 199
BspPI	GGATC	1 cut(s)	361
BsrFI	RCCGGY	2 cut(s)	136, 264
BssAI	RCCGGY	2 cut(s)	136, 264
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	1 cut(s)	366
BssT1I	CCWWGG	1 cut(s)	201
Bst4CI	ACNGT	2 cut(s)	10, 362
BstBAI	YACGTR	1 cut(s)	318
BstC8I	GCNNGC	3 cut(s)	138, 197, 266
BstDEI	CTNAG	1 cut(s)	302
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	1 cut(s)	35
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	2 cut(s)	163, 340
BstKTI	GATC	1 cut(s)	369
BstMBI	GATC	1 cut(s)	366
BstMWI	GCNNNNNNNGC	2 cut(s)	32, 265
BstSLI	GKGCMC	2 cut(s)	28, 201
BstUI	CGCG	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	150, 314
BstX2I	RGATCY	1 cut(s)	366
BstYI	RGATCY	1 cut(s)	366
BsuRI	GGCC	2 cut(s)	26, 199
BtgZI	GCGATG	1 cut(s)	107
BtsCI	GGATG	1 cut(s)	355
Cac8I	GCNNGC	3 cut(s)	138, 197, 266
CaiI	CAGNNNCTG	1 cut(s)	376
CfoI	GCGC	2 cut(s)	163, 340
Cfr10I	RCCGGY	2 cut(s)	136, 264
Cfr13I	GGNCC	4 cut(s)	24, 25, 197, 198
CseI	GACGC	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	52, 358
CviJI	RGCY	6 cut(s)	26, 122, 199, 301, 376, 401
CviKI_1	RGCY	6 cut(s)	26, 122, 199, 301, 376, 401
CviQI	GTAC	2 cut(s)	52, 358
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	1 cut(s)	368
DpnII	GATC	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	2 cut(s)	28, 201
Eco72I	CACGTG	1 cut(s)	318
EcoO109I	RGGNCCY	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	2 cut(s)	28, 201
ErhI	CCWWGG	1 cut(s)	201
FaiI	YATR	1 cut(s)	217
FaqI	GGGAC	1 cut(s)	306
FauI	CCCGC	2 cut(s)	107, 188
Fnu4HI	GCNGC	6 cut(s)	141, 164, 193, 328, 331, 374
FokI	GGATG	1 cut(s)	362
FriOI	GRGCYC	2 cut(s)	28, 201
Fsp4HI	GCNGC	6 cut(s)	141, 164, 193, 328, 331, 374
GlaI	GCGC	2 cut(s)	162, 339
GluI	GCNGC	6 cut(s)	141, 164, 193, 328, 331, 374
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	26, 199
HapII	CCGG	3 cut(s)	15, 137, 265
HgaI	GACGC	1 cut(s)	24
HhaI	GCGC	2 cut(s)	163, 340
Hin6I	GCGC	2 cut(s)	161, 338
HinP1I	GCGC	2 cut(s)	161, 338
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	3 cut(s)	15, 137, 265
HphI	GGTGA	2 cut(s)	190, 374
Hpy166II	GTNNAC	2 cut(s)	6, 358
Hpy188I	TCNGA	2 cut(s)	345, 406
Hpy8I	GTNNAC	2 cut(s)	6, 358
Hpy99I	CGWCG	3 cut(s)	40, 172, 349
HpyAV	CCTTC	3 cut(s)	112, 120, 403
HpyCH4III	ACNGT	2 cut(s)	10, 362
HpyCH4IV	ACGT	3 cut(s)	54, 317, 384
HpyF10VI	GCNNNNNNNGC	2 cut(s)	32, 265
HpyF3I	CTNAG	1 cut(s)	302
HpySE526I	ACGT	3 cut(s)	54, 317, 384
HspAI	GCGC	2 cut(s)	161, 338
KroI	GCCGGC	2 cut(s)	136, 264
KroNI	GCCGGC	2 cut(s)	138, 266
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	366
LpnPI	CCDG	6 cut(s)	28, 108, 150, 278, 337, 383
Lsp1109I	GCAGC	2 cut(s)	150, 314
LweI	GCATC	2 cut(s)	27, 246
MaeII	ACGT	3 cut(s)	54, 317, 384
MalI	GATC	1 cut(s)	368
MboI	GATC	1 cut(s)	366
MflI	RGATCY	1 cut(s)	366
MhlI	GDGCHC	2 cut(s)	28, 201
MluI	ACGCGT	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	368
MnlI	CCTC	5 cut(s)	63, 72, 169, 217, 303
MroNI	GCCGGC	2 cut(s)	136, 264
MseI	TTAA	2 cut(s)	5, 421
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	3 cut(s)	15, 137, 265
MvnI	CGCG	1 cut(s)	35
MwoI	GCNNNNNNNGC	2 cut(s)	32, 265
NaeI	GCCGGC	2 cut(s)	138, 266
NdeII	GATC	1 cut(s)	366
NgoMIV	GCCGGC	2 cut(s)	136, 264
NlaIV	GGNNCC	3 cut(s)	25, 26, 199
PdiI	GCCGGC	2 cut(s)	138, 266
Pfl23II	CGTACG	1 cut(s)	51
PkrI	GCNGC	6 cut(s)	142, 165, 194, 329, 332, 375
PmaCI	CACGTG	1 cut(s)	318
PmlI	CACGTG	1 cut(s)	318
Ppu21I	YACGTR	1 cut(s)	318
Psp1406I	AACGTT	1 cut(s)	384
PspCI	CACGTG	1 cut(s)	318
PspLI	CGTACG	1 cut(s)	51
PspN4I	GGNNCC	3 cut(s)	25, 26, 199
PspOMI	GGGCCC	2 cut(s)	24, 197
PspPI	GGNCC	4 cut(s)	24, 25, 197, 198
PstNI	CAGNNNCTG	1 cut(s)	376
PsuI	RGATCY	1 cut(s)	366
RsaI	GTAC	2 cut(s)	53, 359
RsaNI	GTAC	2 cut(s)	52, 358
SaqAI	TTAA	2 cut(s)	5, 421
SatI	GCNGC	6 cut(s)	141, 164, 193, 328, 331, 374
Sau3AI	GATC	1 cut(s)	366
Sau96I	GGNCC	4 cut(s)	24, 25, 197, 198
SduI	GDGCHC	2 cut(s)	28, 201
SetI	ASST	6 cut(s)	57, 74, 83, 180, 320, 387
SfaNI	GCATC	2 cut(s)	27, 246
SsiI	CCGC	8 cut(s)	114, 140, 192, 195, 233, 295, 331, 373
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	10, 362
TaiI	ACGT	3 cut(s)	57, 320, 387
TauI	GCSGC	4 cut(s)	143, 195, 333, 376
Tru1I	TTAA	2 cut(s)	5, 421
Tru9I	TTAA	2 cut(s)	5, 421
TseI	GCWGC	2 cut(s)	163, 327
TspDTI	ATGAA	1 cut(s)	266
TspGWI	ACGGA	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.